Wall clock time and date at job start Tue Mar 31 2020 01:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39861 * 125.89874 * 2 1 4 4 C 1.35318 * 107.92158 * 179.71279 * 3 2 1 5 5 N 1.34957 * 107.74168 * 0.42498 * 4 3 2 6 6 C 1.46494 * 126.03531 * 179.83870 * 5 4 3 7 7 C 1.50706 * 109.46933 * 124.71582 * 6 5 4 8 8 O 1.21281 * 120.00160 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99667 * 180.02562 * 7 6 5 10 10 C 1.47425 * 125.65136 * 359.95409 * 9 7 6 11 11 C 1.54915 * 104.83334 * 204.16738 * 10 9 7 12 12 C 1.55165 * 101.57980 * 322.99105 * 11 10 9 13 13 O 1.42893 * 110.71912 * 277.13741 * 12 11 10 14 14 C 1.50700 * 110.71840 * 153.86731 * 12 11 10 15 15 H 1.08005 * 119.99597 * 246.47621 * 14 12 11 16 16 C 1.37868 * 120.00222 * 66.47683 * 14 12 11 17 17 N 1.31519 * 120.00187 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00056 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47657 * 89.99989 * 18 16 14 20 20 H 1.48502 * 109.46764 * 209.99866 * 18 16 14 21 21 H 1.48501 * 109.47053 * 329.99583 * 18 16 14 22 22 C 1.47022 * 125.64528 * 180.02562 * 9 7 6 23 23 N 1.30830 * 125.89541 * 179.97438 * 2 1 3 24 24 H 1.09001 * 109.47332 * 270.00331 * 1 2 3 25 25 H 1.09004 * 109.46591 * 30.00326 * 1 2 3 26 26 H 1.08999 * 109.47044 * 149.99940 * 1 2 3 27 27 H 1.08005 * 126.04171 * 359.97438 * 3 2 1 28 28 H 1.07999 * 126.13146 * 180.26478 * 4 3 2 29 29 H 1.08997 * 109.47359 * 4.71967 * 6 5 4 30 30 H 1.09002 * 109.47401 * 244.71329 * 6 5 4 31 31 H 1.08997 * 110.36855 * 323.00479 * 10 9 7 32 32 H 1.08999 * 110.36490 * 85.21794 * 10 9 7 33 33 H 1.08995 * 111.00392 * 204.91661 * 11 10 9 34 34 H 1.09001 * 111.00387 * 81.05917 * 11 10 9 35 35 H 0.96699 * 114.00392 * 293.52799 * 13 12 11 36 36 H 0.96995 * 120.00067 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.88723 * 59.48678 * 22 9 7 38 38 H 1.08998 * 109.88661 * 298.31659 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3271 1.1330 0.0000 4 6 3.6142 0.7153 0.0065 5 7 3.6087 -0.6342 0.0009 6 6 4.7898 -1.5009 0.0015 7 6 4.7120 -2.4552 1.1652 8 8 3.7635 -2.4151 1.9200 9 7 5.6969 -3.3527 1.3677 10 6 6.9012 -3.5100 0.5320 11 6 7.3564 -4.9725 0.7638 12 6 7.0384 -5.1627 2.2705 13 8 8.0941 -4.6410 3.0798 14 6 6.7925 -6.6160 2.5842 15 1 5.8103 -6.9434 2.8919 16 6 7.8213 -7.5277 2.4785 17 7 9.0172 -7.1292 2.1034 18 14 7.5163 -9.3293 2.8666 19 1 7.0937 -10.0373 1.6316 20 1 8.7654 -9.9422 3.3856 21 1 6.4473 -9.4408 3.8914 22 6 5.7475 -4.3379 2.4578 23 7 2.2741 -1.0598 0.0005 24 1 -0.3634 0.0001 1.0277 25 1 -0.3632 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 1.9923 2.1598 -0.0004 28 1 4.4892 1.3485 0.0122 29 1 5.6884 -0.8905 0.0917 30 1 4.8264 -2.0659 -0.9299 31 1 6.6576 -3.3505 -0.5183 32 1 7.6774 -2.8143 0.8505 33 1 8.4236 -5.0844 0.5726 34 1 6.7768 -5.6637 0.1519 35 1 8.9277 -5.1242 2.9985 36 1 9.7410 -7.7706 2.0294 37 1 4.8780 -4.9932 2.4060 38 1 5.7714 -3.8258 3.4196 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592853779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:07 Heat of formation + Delta-G solvation = -23.581415 kcal Electronic energy + Delta-G solvation = -21710.750067 eV Core-core repulsion = 18361.257336 eV Total energy + Delta-G solvation = -3349.492730 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.16693 -40.95602 -38.99965 -36.17265 -34.86197 -34.17570 -31.96760 -31.13331 -30.43523 -29.93483 -27.67936 -26.24570 -23.97004 -22.14355 -21.62152 -20.96889 -20.20369 -19.25624 -18.28080 -17.97236 -17.09546 -16.94510 -16.49495 -16.06026 -15.54621 -15.45308 -14.93039 -14.80805 -14.49897 -14.13669 -13.86375 -13.76379 -13.56087 -13.36155 -13.26542 -13.17429 -12.96084 -12.86816 -12.67290 -12.46379 -12.31045 -12.01826 -11.44019 -11.32335 -11.11665 -10.66643 -10.16998 -10.13179 -9.69896 -9.46138 -8.28966 -6.42665 0.94714 1.39068 1.42599 1.47045 1.47875 1.51832 1.93517 2.02929 2.37341 2.96498 3.32817 3.66899 3.83396 3.95410 4.00866 4.06585 4.11321 4.23135 4.39428 4.47115 4.54770 4.64297 4.81545 4.83799 4.87008 4.94600 5.04435 5.14738 5.18345 5.25826 5.43746 5.51432 5.73853 5.79919 6.02565 6.12617 6.50055 6.60572 6.85516 7.03164 7.28417 7.42657 8.77334 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036930 B = 0.003655 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.007529 B = 7657.948372 C = 8054.299902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.045 3.955 3 C -0.282 4.282 4 C 0.057 3.943 5 N -0.376 5.376 6 C 0.128 3.872 7 C 0.503 3.497 8 O -0.577 6.577 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.130 4.130 12 C 0.237 3.763 13 O -0.594 6.594 14 C -0.567 4.567 15 H 0.048 0.952 16 C 0.040 3.960 17 N -0.905 5.905 18 Si 0.958 3.042 19 H -0.273 1.273 20 H -0.276 1.276 21 H -0.280 1.280 22 C 0.131 3.869 23 N -0.328 5.328 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.174 0.826 28 H 0.217 0.783 29 H 0.170 0.830 30 H 0.135 0.865 31 H 0.109 0.891 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.057 0.943 35 H 0.384 0.616 36 H 0.274 0.726 37 H 0.052 0.948 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.585 14.755 -9.334 18.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C -0.311 4.311 4 C -0.087 4.087 5 N -0.158 5.158 6 C 0.004 3.996 7 C 0.291 3.709 8 O -0.456 6.456 9 N -0.342 5.342 10 C -0.021 4.021 11 C -0.169 4.169 12 C 0.197 3.803 13 O -0.404 6.404 14 C -0.605 4.605 15 H 0.066 0.934 16 C -0.162 4.162 17 N -0.544 5.544 18 Si 0.784 3.216 19 H -0.198 1.198 20 H -0.201 1.201 21 H -0.205 1.205 22 C 0.008 3.992 23 N -0.151 5.151 24 H 0.094 0.906 25 H 0.122 0.878 26 H 0.083 0.917 27 H 0.191 0.809 28 H 0.234 0.766 29 H 0.187 0.813 30 H 0.153 0.847 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.239 13.844 -8.826 17.234 hybrid contribution 0.396 -1.027 0.554 1.232 sum -4.843 12.817 -8.273 16.005 Atomic orbital electron populations 1.20246 0.85147 1.04049 1.03243 1.23064 0.98501 0.91257 0.99393 1.21761 0.91591 1.00384 1.17389 1.23311 1.01409 0.83765 1.00216 1.48227 1.04555 1.05412 1.57643 1.21689 0.86922 0.93389 0.97639 1.21045 0.81049 0.81525 0.87290 1.90730 1.33946 1.71812 1.49106 1.48673 1.22116 1.33884 1.29577 1.22664 0.85828 0.98097 0.95511 1.23110 1.01732 0.93944 0.98066 1.19543 0.83119 0.89695 0.87970 1.86076 1.24728 1.60016 1.69567 1.21753 0.96911 0.93536 1.48268 0.93384 1.25546 0.94740 1.02675 0.93238 1.69605 1.01494 1.36527 1.46792 0.85559 0.77685 0.79919 0.78463 1.19827 1.20108 1.20508 1.21754 0.98299 0.89828 0.89333 1.77400 0.87714 1.24623 1.25382 0.90575 0.87765 0.91716 0.80881 0.76645 0.81272 0.84742 0.87314 0.89815 0.90098 0.92379 0.76488 0.91643 0.93006 0.94167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.37 10.45 71.24 0.74 -0.63 16 2 C 0.04 1.24 7.22 43.10 0.31 1.55 16 3 C -0.28 -6.18 10.74 21.99 0.24 -5.95 16 4 C 0.06 1.19 11.45 83.54 0.96 2.15 16 5 N -0.38 -10.53 3.40 -351.79 -1.20 -11.73 16 6 C 0.13 3.02 6.00 85.64 0.51 3.53 16 7 C 0.50 18.23 7.88 87.66 0.69 18.92 16 8 O -0.58 -27.00 16.03 -3.03 -0.05 -27.05 16 9 N -0.61 -22.68 3.33 -811.78 -2.70 -25.38 16 10 C 0.10 3.03 6.68 86.86 0.58 3.61 16 11 C -0.13 -5.21 5.67 31.99 0.18 -5.03 16 12 C 0.24 11.34 0.86 -10.35 -0.01 11.33 16 13 O -0.59 -29.56 13.09 -148.98 -1.95 -31.51 16 14 C -0.57 -30.01 8.21 25.60 0.21 -29.80 16 15 H 0.05 2.63 7.53 -2.91 -0.02 2.60 16 16 C 0.04 2.00 5.28 84.65 0.45 2.45 16 17 N -0.90 -45.11 10.70 21.44 0.23 -44.88 16 18 Si 0.96 41.19 29.54 68.60 2.03 43.22 16 19 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 20 H -0.28 -11.45 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 22 C 0.13 6.06 6.22 86.73 0.54 6.60 16 23 N -0.33 -11.38 11.64 -47.39 -0.55 -11.93 16 24 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.17 2.60 8.06 -2.91 -0.02 2.57 16 28 H 0.22 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.17 2.32 8.07 -2.39 -0.02 2.30 16 30 H 0.13 2.56 7.85 -2.39 -0.02 2.55 16 31 H 0.11 2.31 7.48 -2.39 -0.02 2.29 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 3.34 7.77 -2.39 -0.02 3.32 16 34 H 0.06 2.42 8.04 -2.39 -0.02 2.40 16 35 H 0.38 19.20 6.99 -74.06 -0.52 18.68 16 36 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 37 H 0.05 2.55 7.63 -2.39 -0.02 2.54 16 38 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 Total: -1.00 -73.33 322.12 1.77 -71.56 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.56 Total: 28.96 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: 5.40 Total: 8.74 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -4.22 Total: -93.92 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -2.00 Total: -58.56 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -73.33 1.77 -71.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592853779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.980 kcal (2) G-P(sol) polarization free energy of solvation -73.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds