Wall clock time and date at job start Tue Mar 31 2020 02:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.70895 * 2 1 4 4 C 1.53294 * 109.68063 * 239.46615 * 2 1 3 5 5 O 1.42962 * 109.22543 * 187.97193 * 4 2 1 6 6 C 1.42963 * 114.16583 * 62.58246 * 5 4 2 7 7 H 1.09002 * 109.51295 * 57.39281 * 6 5 4 8 8 C 1.50699 * 109.51686 * 177.49604 * 6 5 4 9 9 C 1.38264 * 119.98909 * 220.00078 * 8 6 5 10 10 C 1.38217 * 120.05104 * 179.97438 * 9 8 6 11 11 C 1.38216 * 120.02619 * 0.02562 * 10 9 8 12 12 C 1.38439 * 119.97737 * 359.97438 * 11 10 9 13 13 F 1.35094 * 120.03010 * 180.02562 * 12 11 10 14 14 C 1.38174 * 119.98100 * 39.72331 * 8 6 5 15 15 C 1.53718 * 109.14759 * 297.29300 * 6 5 4 16 16 N 1.47148 * 108.16365 * 52.53161 * 15 6 5 17 17 C 1.36935 * 120.98288 * 129.43202 * 16 15 6 18 18 H 1.07997 * 120.00450 * 208.25255 * 17 16 15 19 19 C 1.38819 * 119.99726 * 28.25375 * 17 16 15 20 20 N 1.31623 * 119.99733 * 24.84585 * 19 17 16 21 21 Si 1.86798 * 120.00052 * 204.84351 * 19 17 16 22 22 H 1.48498 * 109.46969 * 90.00113 * 21 19 17 23 23 H 1.48497 * 109.46977 * 330.00045 * 21 19 17 24 24 H 1.48498 * 109.46852 * 210.00015 * 21 19 17 25 25 H 1.08994 * 109.46630 * 299.45993 * 1 2 3 26 26 H 1.08995 * 109.47388 * 59.45834 * 1 2 3 27 27 H 1.08994 * 109.46672 * 179.46259 * 1 2 3 28 28 H 1.09002 * 109.46887 * 180.53986 * 3 2 1 29 29 H 1.08991 * 109.47292 * 300.53886 * 3 2 1 30 30 H 1.08998 * 109.46724 * 60.54404 * 3 2 1 31 31 H 1.09001 * 109.51396 * 307.89917 * 4 2 1 32 32 H 1.09000 * 109.51395 * 68.04917 * 4 2 1 33 33 H 1.07998 * 119.96968 * 359.97438 * 9 8 6 34 34 H 1.07999 * 119.98783 * 180.02562 * 10 9 8 35 35 H 1.08007 * 120.01318 * 180.02562 * 11 10 9 36 36 H 1.08001 * 120.02020 * 0.02562 * 14 8 6 37 37 H 1.09007 * 109.83001 * 292.85622 * 15 6 5 38 38 H 1.08995 * 109.74926 * 172.16864 * 15 6 5 39 39 H 0.97006 * 120.00212 * 3.80658 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4404 0.0000 4 6 2.0463 -0.7333 -1.2432 5 8 3.4636 -0.8910 -1.1421 6 6 3.8860 -1.6895 -0.0341 7 1 3.4218 -2.6738 -0.0966 8 6 5.3855 -1.8375 -0.0628 9 6 5.9663 -3.0515 0.2544 10 6 7.3414 -3.1888 0.2280 11 6 8.1375 -2.1123 -0.1152 12 6 7.5571 -0.8963 -0.4330 13 9 8.3342 0.1565 -0.7691 14 6 6.1789 -0.7615 -0.4117 15 6 3.4648 -1.0002 1.2738 16 7 2.0257 -0.7040 1.1933 17 6 1.1737 -1.0679 2.2017 18 1 0.1366 -1.2760 1.9838 19 6 1.6431 -1.1692 3.5042 20 7 2.7025 -0.4829 3.8772 21 14 0.7711 -2.2794 4.7275 22 1 1.3644 -3.6396 4.6717 23 1 -0.6722 -2.3544 4.3865 24 1 0.9281 -1.7266 6.0968 25 1 -0.3632 0.5054 0.8948 26 1 -0.3634 0.5222 -0.8850 27 1 -0.3632 -1.0276 -0.0096 28 1 3.1360 1.4359 -0.0097 29 1 1.6770 1.9585 -0.8850 30 1 1.6928 1.9528 0.8948 31 1 1.5747 -1.7138 -1.3097 32 1 1.8073 -0.1524 -2.1340 33 1 5.3450 -3.8930 0.5230 34 1 7.7940 -4.1376 0.4755 35 1 9.2120 -2.2199 -0.1362 36 1 5.7249 0.1856 -0.6634 37 1 4.0240 -0.0730 1.3998 38 1 3.6568 -1.6628 2.1177 39 1 3.1223 0.1354 3.2588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595762127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:43 Heat of formation + Delta-G solvation = -61.190999 kcal Electronic energy + Delta-G solvation = -22675.706707 eV Core-core repulsion = 19304.663141 eV Total energy + Delta-G solvation = -3371.043566 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.93413 -41.08341 -39.61744 -36.93551 -35.22765 -33.31633 -31.65945 -31.36228 -29.13189 -28.01096 -27.34458 -25.25614 -24.12331 -23.59679 -22.29279 -20.48701 -18.88320 -18.33875 -17.74393 -17.17046 -17.14410 -16.62490 -16.51508 -16.15125 -15.88894 -15.48371 -15.47242 -14.79190 -14.65290 -14.19485 -14.00146 -13.82700 -13.35445 -13.28739 -13.09617 -12.74268 -12.69938 -12.56631 -12.53283 -12.16070 -12.03782 -11.93660 -11.83516 -11.73551 -11.18415 -10.76784 -10.38646 -9.96721 -9.71064 -8.88401 -8.21743 -5.38207 0.11079 0.21848 1.58462 1.65346 1.82113 2.48120 2.64800 2.80525 3.15023 3.25048 3.35337 3.72767 3.86488 3.95085 4.07280 4.09637 4.19646 4.23638 4.32442 4.40322 4.43508 4.61768 4.68970 4.75096 4.80131 4.85461 4.94990 4.96096 5.03447 5.05541 5.07999 5.13650 5.29719 5.39284 5.44439 5.50994 5.89914 5.92550 6.21535 6.38507 7.02393 7.77485 8.23220 9.02677 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016805 B = 0.006377 C = 0.005281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.748308 B = 4390.037409 C = 5301.046624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.141 3.859 3 C -0.140 4.140 4 C 0.063 3.937 5 O -0.386 6.386 6 C 0.123 3.877 7 H 0.067 0.933 8 C -0.061 4.061 9 C -0.124 4.124 10 C -0.080 4.080 11 C -0.149 4.149 12 C 0.077 3.923 13 F -0.148 7.148 14 C -0.143 4.143 15 C 0.152 3.848 16 N -0.606 5.606 17 C -0.343 4.343 18 H 0.066 0.934 19 C -0.078 4.078 20 N -0.946 5.946 21 Si 1.115 2.885 22 H -0.283 1.283 23 H -0.271 1.271 24 H -0.299 1.299 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.050 0.950 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.174 0.826 35 H 0.164 0.836 36 H 0.119 0.881 37 H 0.000 1.000 38 H 0.052 0.948 39 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.282 -5.168 -10.599 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.054 3.946 3 C -0.200 4.200 4 C -0.014 4.014 5 O -0.305 6.305 6 C 0.064 3.936 7 H 0.085 0.915 8 C -0.062 4.062 9 C -0.142 4.142 10 C -0.098 4.098 11 C -0.167 4.167 12 C 0.058 3.942 13 F -0.127 7.127 14 C -0.162 4.162 15 C 0.026 3.974 16 N -0.330 5.330 17 C -0.472 4.472 18 H 0.083 0.917 19 C -0.274 4.274 20 N -0.588 5.588 21 Si 0.940 3.060 22 H -0.210 1.210 23 H -0.196 1.196 24 H -0.226 1.226 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.191 0.809 35 H 0.182 0.818 36 H 0.137 0.863 37 H 0.017 0.983 38 H 0.071 0.929 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.413 -5.626 -9.188 12.058 hybrid contribution -0.130 1.382 -1.007 1.715 sum 5.284 -4.244 -10.196 12.243 Atomic orbital electron populations 1.21654 0.93228 1.01482 1.01371 1.20967 0.94883 0.91057 0.87741 1.22048 0.99916 0.97509 1.00484 1.23126 0.80325 0.99840 0.98143 1.87809 1.23316 1.72209 1.47145 1.21415 0.90505 0.94144 0.87579 0.91533 1.19556 0.93557 0.94180 0.98885 1.21346 0.96499 0.96466 0.99938 1.21355 0.92085 0.99729 0.96615 1.21486 1.02531 0.90933 1.01799 1.17888 0.88176 0.85402 1.02742 1.91456 1.74620 1.56352 1.90271 1.20908 0.92164 1.00268 1.02906 1.21318 0.85081 0.95913 0.95118 1.44573 1.03380 1.65593 1.19449 1.20234 0.94819 1.43891 0.88289 0.91683 1.27157 1.00380 1.01555 0.98322 1.70888 1.25738 1.25056 1.37111 0.82834 0.75074 0.74648 0.73440 1.20968 1.19636 1.22644 0.94119 0.90081 0.93034 0.94900 0.90498 0.95578 0.93159 0.86406 0.83886 0.80859 0.81825 0.86306 0.98255 0.92912 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.25 7.25 71.98 0.52 -3.73 16 2 C 0.14 5.58 1.04 3.58 0.00 5.58 16 3 C -0.14 -5.46 8.53 71.98 0.61 -4.84 16 4 C 0.06 2.15 5.66 72.08 0.41 2.56 16 5 O -0.39 -14.56 9.33 -148.98 -1.39 -15.95 16 6 C 0.12 4.78 3.00 30.09 0.09 4.87 16 7 H 0.07 2.55 8.00 -2.39 -0.02 2.53 16 8 C -0.06 -2.10 4.98 -19.87 -0.10 -2.20 16 9 C -0.12 -3.46 9.67 22.27 0.22 -3.24 16 10 C -0.08 -1.75 10.04 22.26 0.22 -1.53 16 11 C -0.15 -3.49 10.03 22.31 0.22 -3.27 16 12 C 0.08 2.32 7.30 22.38 0.16 2.49 16 13 F -0.15 -4.55 17.27 44.97 0.78 -3.78 16 14 C -0.14 -4.95 9.33 22.31 0.21 -4.74 16 15 C 0.15 7.26 3.78 86.50 0.33 7.59 16 16 N -0.61 -29.45 2.58 -650.04 -1.68 -31.13 16 17 C -0.34 -18.34 8.58 84.04 0.72 -17.61 16 18 H 0.07 3.42 6.31 -2.91 -0.02 3.40 16 19 C -0.08 -4.34 4.70 84.86 0.40 -3.95 16 20 N -0.95 -57.61 12.56 21.65 0.27 -57.34 16 21 Si 1.11 50.21 29.99 68.60 2.06 52.27 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 25 H 0.04 1.62 7.53 -2.39 -0.02 1.60 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.05 1.83 7.62 -2.39 -0.02 1.81 16 28 H 0.03 1.35 7.21 -2.39 -0.02 1.34 16 29 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.14 3.51 8.04 -2.91 -0.02 3.49 16 34 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 35 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.12 4.40 7.77 -2.91 -0.02 4.38 16 37 H 0.00 -0.02 7.23 -2.38 -0.02 -0.04 16 38 H 0.05 2.83 6.56 -2.39 -0.02 2.81 16 39 H 0.25 15.84 6.55 -92.70 -0.61 15.24 16 Total: -1.00 -66.19 316.57 5.26 -60.94 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.20 Total: 17.01 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: 4.02 Total: -22.02 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -1.41 Total: -88.47 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.39 Total: -15.95 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.78 Total: -3.78 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.06 Total: 52.27 kcal Total: -66.19 5.26 -60.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595762127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.254 kcal (2) G-P(sol) polarization free energy of solvation -66.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds