Wall clock time and date at job start Tue Mar 31 2020 02:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.71037 * 2 1 4 4 C 1.53713 * 109.84006 * 239.28318 * 2 1 3 5 5 O 1.42962 * 109.14519 * 292.86003 * 4 2 1 6 6 C 1.42962 * 114.16703 * 297.28194 * 5 4 2 7 7 H 1.08999 * 109.51193 * 302.66240 * 6 5 4 8 8 C 1.50698 * 109.55385 * 182.53338 * 6 5 4 9 9 C 1.38263 * 119.98710 * 324.95554 * 8 6 5 10 10 C 1.38227 * 120.05283 * 179.72986 * 9 8 6 11 11 C 1.38222 * 120.02317 * 0.54560 * 10 9 8 12 12 C 1.38447 * 119.97306 * 359.73083 * 11 10 9 13 13 F 1.35096 * 120.02323 * 180.02562 * 12 11 10 14 14 C 1.38180 * 119.98596 * 145.23565 * 8 6 5 15 15 C 1.53298 * 109.21807 * 62.58546 * 6 5 4 16 16 N 1.47148 * 108.38475 * 307.69628 * 15 6 5 17 17 C 1.36941 * 120.98298 * 230.51743 * 16 15 6 18 18 H 1.08001 * 120.00714 * 151.81327 * 17 16 15 19 19 C 1.38813 * 119.99890 * 331.80842 * 17 16 15 20 20 N 1.31622 * 119.99883 * 335.91053 * 19 17 16 21 21 Si 1.86798 * 120.00140 * 155.90998 * 19 17 16 22 22 H 1.48492 * 109.47334 * 59.99953 * 21 19 17 23 23 H 1.48499 * 109.47243 * 299.99935 * 21 19 17 24 24 H 1.48505 * 109.47155 * 180.02562 * 21 19 17 25 25 H 1.09006 * 109.47128 * 299.46400 * 1 2 3 26 26 H 1.09001 * 109.47348 * 59.46375 * 1 2 3 27 27 H 1.08995 * 109.47094 * 179.46870 * 1 2 3 28 28 H 1.09007 * 109.47108 * 180.53672 * 3 2 1 29 29 H 1.09001 * 109.46760 * 300.53379 * 3 2 1 30 30 H 1.08998 * 109.47083 * 60.53732 * 3 2 1 31 31 H 1.08998 * 109.65963 * 172.89528 * 4 2 1 32 32 H 1.09006 * 109.48031 * 52.71737 * 4 2 1 33 33 H 1.07999 * 119.97580 * 359.97438 * 9 8 6 34 34 H 1.07991 * 119.99310 * 180.27807 * 10 9 8 35 35 H 1.07997 * 120.01720 * 179.70782 * 11 10 9 36 36 H 1.08000 * 120.01078 * 0.02562 * 14 8 6 37 37 H 1.09003 * 109.67640 * 187.97485 * 15 6 5 38 38 H 1.08991 * 109.71428 * 67.44090 * 15 6 5 39 39 H 0.96997 * 120.00090 * 354.23796 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0460 1.4404 0.0000 4 6 2.0517 -0.7386 -1.2430 5 8 1.7173 -2.1247 -1.1396 6 6 2.3218 -2.7913 -0.0288 7 1 3.4054 -2.6891 -0.0886 8 6 1.9517 -4.2519 -0.0547 9 6 0.7011 -4.6401 -0.4984 10 6 0.3621 -5.9798 -0.5281 11 6 1.2694 -6.9322 -0.1034 12 6 2.5199 -6.5443 0.3464 13 9 3.4076 -7.4744 0.7612 14 6 2.8603 -5.2022 0.3704 15 6 1.8190 -2.1587 1.2739 16 7 2.0256 -0.7040 1.1934 17 6 2.6554 -0.0245 2.2018 18 1 3.2003 0.8822 1.9841 19 6 2.5934 -0.5011 3.5041 20 7 1.5987 -1.2800 3.8732 21 14 3.9218 -0.0370 4.7327 22 1 3.9548 1.4390 4.8921 23 1 5.2398 -0.5112 4.2395 24 1 3.6271 -0.6704 6.0432 25 1 -0.3634 0.5055 0.8948 26 1 -0.3634 0.5221 -0.8851 27 1 -0.3633 -1.0276 -0.0095 28 1 3.1360 1.4358 -0.0096 29 1 1.6770 1.9584 -0.8852 30 1 1.6927 1.9529 0.8947 31 1 3.1342 -0.6290 -1.3072 32 1 1.5895 -0.3182 -2.1363 33 1 -0.0102 -3.8962 -0.8258 34 1 -0.6133 -6.2822 -0.8790 35 1 1.0027 -7.9786 -0.1222 36 1 3.8353 -4.8983 0.7216 37 1 2.3781 -2.5627 2.1179 38 1 0.7577 -2.3723 1.4007 39 1 0.8659 -1.4535 3.2619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595762128.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:34:51 Heat of formation + Delta-G solvation = -45.116928 kcal Electronic energy + Delta-G solvation = -22632.810684 eV Core-core repulsion = 19262.464142 eV Total energy + Delta-G solvation = -3370.346542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.74555 -39.62274 -38.26912 -35.26683 -33.53229 -31.81715 -30.38267 -29.73405 -27.41860 -26.53156 -25.76127 -23.52885 -22.60425 -22.31906 -20.86854 -18.75262 -17.32974 -16.84489 -16.31050 -15.96805 -15.59174 -15.40109 -14.99297 -14.59832 -14.44964 -13.83248 -13.62817 -13.58234 -13.14105 -12.80894 -12.47983 -12.28119 -12.00255 -11.68153 -11.58164 -11.44856 -11.19698 -10.99952 -10.75499 -10.65483 -10.46230 -10.30505 -10.10325 -9.94315 -9.46975 -9.10937 -8.77224 -8.48795 -8.36786 -6.93044 -6.09534 -3.29990 1.31859 1.36057 3.45538 3.48942 3.66916 3.71659 4.05841 4.48349 4.52726 4.88557 4.97466 5.05199 5.25653 5.34168 5.41625 5.49389 5.55252 5.68628 5.73994 5.86153 5.96727 6.03778 6.06888 6.14867 6.21406 6.25100 6.26681 6.43064 6.52771 6.54533 6.60572 6.64961 6.72046 6.93245 6.96539 7.04716 7.09773 7.71490 7.95881 8.50083 9.02031 9.77374 10.21204 11.16803 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.015528 B = 0.006662 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.720572 B = 4201.919490 C = 5407.585624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.155 3.845 3 C -0.128 4.128 4 C 0.061 3.939 5 O -0.382 6.382 6 C 0.108 3.892 7 H 0.064 0.936 8 C -0.036 4.036 9 C -0.104 4.104 10 C -0.096 4.096 11 C -0.161 4.161 12 C 0.094 3.906 13 F -0.144 7.144 14 C -0.144 4.144 15 C 0.138 3.862 16 N -0.588 5.588 17 C -0.349 4.349 18 H 0.064 0.936 19 C -0.022 4.022 20 N -0.913 5.913 21 Si 1.063 2.937 22 H -0.292 1.292 23 H -0.293 1.293 24 H -0.285 1.285 25 H 0.051 0.949 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.135 0.865 37 H 0.085 0.915 38 H 0.029 0.971 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -5.227 -9.853 11.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.067 3.933 3 C -0.186 4.186 4 C -0.017 4.017 5 O -0.301 6.301 6 C 0.049 3.951 7 H 0.082 0.918 8 C -0.037 4.037 9 C -0.122 4.122 10 C -0.114 4.114 11 C -0.180 4.180 12 C 0.075 3.925 13 F -0.122 7.122 14 C -0.163 4.163 15 C 0.011 3.989 16 N -0.312 5.312 17 C -0.478 4.478 18 H 0.081 0.919 19 C -0.225 4.225 20 N -0.553 5.553 21 Si 0.892 3.108 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.211 1.211 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.359 -5.564 -8.364 10.052 hybrid contribution -0.278 0.261 -1.240 1.297 sum -0.636 -5.304 -9.604 10.990 Atomic orbital electron populations 1.22138 0.97537 1.01055 1.00079 1.20685 0.92244 0.92222 0.88174 1.21733 1.00845 0.95291 1.00698 1.23108 0.98930 0.81404 0.98237 1.87762 1.72486 1.22429 1.47419 1.21575 0.96693 0.87161 0.89672 0.91788 1.19575 0.93577 0.94214 0.96291 1.21086 0.96381 0.95882 0.98836 1.20984 0.99045 0.92550 0.98790 1.21064 0.92920 1.00772 1.03278 1.17566 0.88125 0.85972 1.00812 1.91475 1.67665 1.64933 1.88157 1.20929 1.01304 0.90845 1.03237 1.21523 0.98476 0.84767 0.94088 1.44291 1.67144 1.00834 1.18930 1.19955 1.28666 1.11470 0.87668 0.91855 1.25870 1.01077 0.99452 0.96107 1.70786 1.07564 1.39183 1.37745 0.83554 0.75343 0.75612 0.76262 1.21943 1.22044 1.21085 0.92951 0.94173 0.93155 0.92774 0.94006 0.91629 0.93612 0.89819 0.84936 0.85223 0.85161 0.84713 0.89659 0.95314 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.54 37.16 0.32 -2.49 16 2 C 0.15 3.07 1.05 -131.09 -0.14 2.93 16 3 C -0.13 -2.34 7.26 37.16 0.27 -2.07 16 4 C 0.06 1.08 5.69 37.53 0.21 1.30 16 5 O -0.38 -7.12 9.16 -35.23 -0.32 -7.44 16 6 C 0.11 2.08 2.99 -27.73 -0.08 2.00 16 7 H 0.06 1.26 8.05 -51.93 -0.42 0.84 16 8 C -0.04 -0.61 5.01 -104.64 -0.52 -1.14 16 9 C -0.10 -1.60 9.35 -39.58 -0.37 -1.97 16 10 C -0.10 -1.24 10.04 -39.59 -0.40 -1.64 16 11 C -0.16 -2.14 10.03 -39.51 -0.40 -2.53 16 12 C 0.09 1.43 7.30 -39.42 -0.29 1.15 16 13 F -0.14 -2.19 17.27 2.25 0.04 -2.15 16 14 C -0.14 -2.35 9.66 -39.51 -0.38 -2.73 16 15 C 0.14 3.13 3.76 -3.53 -0.01 3.12 16 16 N -0.59 -13.91 2.58 -156.84 -0.41 -14.31 16 17 C -0.35 -9.16 8.59 -15.06 -0.13 -9.29 16 18 H 0.06 1.65 6.31 -52.49 -0.33 1.32 16 19 C -0.02 -0.61 4.72 -17.43 -0.08 -0.69 16 20 N -0.91 -26.61 12.49 55.49 0.69 -25.92 16 21 Si 1.06 24.66 29.98 -169.99 -5.10 19.56 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.98 7.21 -51.93 -0.37 0.60 16 28 H 0.05 1.00 7.62 -51.93 -0.40 0.61 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.31 7.53 -51.93 -0.39 0.92 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.13 2.02 7.63 -52.49 -0.40 1.62 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 36 H 0.13 2.10 8.06 -52.49 -0.42 1.67 16 37 H 0.09 2.18 6.54 -51.93 -0.34 1.84 16 38 H 0.03 0.69 7.24 -51.93 -0.38 0.32 16 39 H 0.27 7.94 6.59 -40.82 -0.27 7.67 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -28.91 316.39 -7.80 -36.71 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.47 Total: 2.86 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -2.00 Total: -14.07 kcal Atomic # 7 Polarization: -40.52 SS G_CDS: 0.29 Total: -40.23 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.32 Total: -7.44 kcal Atomic # 9 Polarization: -2.19 SS G_CDS: 0.04 Total: -2.15 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -5.10 Total: 19.56 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.91 -7.80 -36.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595762128.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.406 kcal (2) G-P(sol) polarization free energy of solvation -28.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds