Wall clock time and date at job start Tue Mar 31 2020 02:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34160 * 126.37030 * 2 1 4 4 N 1.34653 * 107.77745 * 180.02562 * 3 2 1 5 5 C 1.30964 * 108.62084 * 0.02562 * 4 3 2 6 6 N 1.38631 * 125.69574 * 180.02562 * 5 4 3 7 7 C 1.34771 * 120.00501 * 0.02562 * 6 5 4 8 8 O 1.21581 * 119.99641 * 5.10699 * 7 6 5 9 9 N 1.34777 * 120.00415 * 185.11323 * 7 6 5 10 10 C 1.46923 * 120.62586 * 354.95746 * 9 7 6 11 11 C 1.53198 * 108.77184 * 126.42032 * 10 9 7 12 12 C 1.53044 * 109.31274 * 54.63595 * 11 10 9 13 13 C 1.53040 * 109.53680 * 298.63534 * 12 11 10 14 14 H 1.09002 * 109.50221 * 301.41512 * 13 12 11 15 15 C 1.50701 * 109.49748 * 181.34821 * 13 12 11 16 16 H 1.07994 * 119.99681 * 0.06491 * 15 13 12 17 17 C 1.37881 * 120.00003 * 180.02562 * 15 13 12 18 18 N 1.31513 * 119.99885 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 120.00170 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47152 * 59.99333 * 19 17 15 21 21 H 1.48494 * 109.47067 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.46767 * 299.99710 * 19 17 15 23 23 C 1.46996 * 120.61528 * 174.99149 * 9 7 6 24 24 O 1.34193 * 108.59949 * 0.26508 * 5 4 3 25 25 H 1.08996 * 109.47129 * 90.00160 * 1 2 3 26 26 H 1.09005 * 109.47051 * 209.99630 * 1 2 3 27 27 H 1.08991 * 109.47352 * 330.00009 * 1 2 3 28 28 H 1.07994 * 126.11064 * 0.05482 * 3 2 1 29 29 H 0.97001 * 119.99961 * 180.02562 * 6 5 4 30 30 H 1.08999 * 109.59107 * 6.63760 * 10 9 7 31 31 H 1.08997 * 109.59162 * 246.20550 * 10 9 7 32 32 H 1.09002 * 109.49552 * 294.68803 * 11 10 9 33 33 H 1.08997 * 109.49865 * 174.59029 * 11 10 9 34 34 H 1.08990 * 109.45827 * 178.61822 * 12 11 10 35 35 H 1.09000 * 109.44618 * 58.64568 * 12 11 10 36 36 H 0.97003 * 120.00266 * 180.02562 * 18 17 15 37 37 H 1.09002 * 109.58203 * 113.80073 * 23 9 7 38 38 H 1.09001 * 109.62984 * 353.35112 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3025 1.0803 0.0000 4 7 3.5788 0.6509 -0.0006 5 6 3.5794 -0.6587 -0.0015 6 7 4.7057 -1.4670 -0.0018 7 6 5.9337 -0.9119 -0.0006 8 8 6.0555 0.2941 0.0945 9 7 7.0268 -1.6934 -0.1049 10 6 6.9025 -3.1574 -0.1097 11 6 7.6135 -3.7084 -1.3498 12 6 9.0569 -3.2000 -1.3734 13 6 9.0599 -1.6718 -1.4540 14 1 8.5271 -1.3536 -2.3501 15 6 10.4812 -1.1739 -1.5106 16 1 11.3007 -1.8770 -1.4921 17 6 10.7352 0.1792 -1.5868 18 7 9.7371 1.0352 -1.6106 19 14 12.4969 0.7963 -1.6577 20 1 13.1695 0.2368 -2.8575 21 1 12.4991 2.2792 -1.7358 22 1 13.2225 0.3633 -0.4364 23 6 8.3658 -1.0969 -0.2152 24 8 2.3078 -1.0873 -0.0074 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.9774 2.1101 0.0008 29 1 4.6099 -2.4323 -0.0028 30 1 5.8488 -3.4346 -0.1394 31 1 7.3649 -3.5664 0.7886 32 1 7.0943 -3.3711 -2.2468 33 1 7.6120 -4.7979 -1.3160 34 1 9.5722 -3.6105 -2.2416 35 1 9.5681 -3.5167 -0.4643 36 1 9.9158 1.9871 -1.6646 37 1 8.9475 -1.3380 0.6745 38 1 8.2776 -0.0151 -0.3147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596779039.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:32 Heat of formation + Delta-G solvation = -9.748473 kcal Electronic energy + Delta-G solvation = -21999.289356 eV Core-core repulsion = 18650.396467 eV Total energy + Delta-G solvation = -3348.892889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.33940 -41.55209 -38.68348 -36.32071 -35.74256 -35.17805 -33.55100 -32.66164 -31.51650 -27.72793 -26.94059 -26.16050 -24.11446 -23.50281 -22.56723 -21.67791 -20.49287 -19.89698 -18.82849 -18.11377 -18.06255 -16.98811 -16.60047 -16.35545 -15.97035 -15.35108 -15.24669 -15.08639 -14.56014 -14.33072 -14.22787 -14.12480 -13.77722 -13.57695 -13.14958 -12.84076 -12.73893 -12.63054 -12.28900 -12.25213 -11.91405 -11.75976 -11.65483 -11.53705 -11.08238 -10.96972 -10.86596 -10.50663 -9.58052 -9.07119 -8.09188 -6.26733 0.39784 0.47874 1.42810 1.44246 1.52679 1.63263 2.12998 2.21878 2.43503 2.69576 3.19597 3.72270 3.90009 3.99583 4.10214 4.13917 4.29277 4.40362 4.59369 4.70390 4.76305 4.78221 4.81471 4.91620 5.11253 5.14004 5.18190 5.25414 5.28074 5.30400 5.39285 5.52434 5.57027 5.68671 5.91510 6.02985 6.34018 6.57177 6.86367 7.00924 7.39350 7.44280 8.93765 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.025926 B = 0.004360 C = 0.003830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.742449 B = 6420.117121 C = 7309.860249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.056 4.056 3 C -0.051 4.051 4 N -0.515 5.515 5 C 0.414 3.586 6 N -0.616 5.616 7 C 0.699 3.301 8 O -0.576 6.576 9 N -0.612 5.612 10 C 0.103 3.897 11 C -0.126 4.126 12 C -0.105 4.105 13 C 0.038 3.962 14 H -0.014 1.014 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.009 3.991 18 N -0.915 5.915 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.292 1.292 22 H -0.266 1.266 23 C 0.144 3.856 24 O -0.214 6.214 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.116 0.884 28 H 0.207 0.793 29 H 0.433 0.567 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.259 0.741 37 H 0.044 0.956 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.383 -10.420 4.021 20.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.109 4.109 3 C -0.189 4.189 4 N -0.252 5.252 5 C 0.116 3.884 6 N -0.280 5.280 7 C 0.400 3.600 8 O -0.450 6.450 9 N -0.349 5.349 10 C -0.019 4.019 11 C -0.164 4.164 12 C -0.143 4.143 13 C 0.018 3.982 14 H 0.004 0.996 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.190 4.190 18 N -0.554 5.554 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.218 1.218 22 H -0.190 1.190 23 C 0.022 3.978 24 O -0.101 6.101 25 H 0.116 0.884 26 H 0.108 0.892 27 H 0.134 0.866 28 H 0.223 0.777 29 H 0.276 0.724 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.069 0.931 33 H 0.128 0.872 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.724 -9.078 4.071 19.459 hybrid contribution 0.589 0.068 -0.246 0.642 sum -16.135 -9.010 3.825 18.872 Atomic orbital electron populations 1.20487 0.79534 1.05951 1.05150 1.24138 0.96061 0.82511 1.08204 1.23628 0.86499 1.02245 1.06504 1.71201 1.24317 1.07217 1.22444 1.21072 0.79899 0.86267 1.01135 1.41293 0.99659 1.09836 1.77245 1.15779 0.80006 0.85200 0.78987 1.91050 1.84309 1.14222 1.55393 1.47742 1.05002 1.07372 1.74741 1.22057 1.01920 0.77629 1.00261 1.21929 0.95590 1.01855 0.97068 1.21511 0.96305 0.95198 1.01260 1.18937 0.94181 0.92944 0.92090 0.99589 1.21494 0.92925 0.92029 1.50977 0.91665 1.25915 1.00964 0.97532 0.94614 1.70087 1.32624 1.02333 1.50335 0.85617 0.80266 0.76711 0.79126 1.19295 1.21751 1.19048 1.21774 0.77736 1.00169 0.98156 1.84321 1.15017 1.37704 1.73062 0.88373 0.89234 0.86604 0.77652 0.72376 0.88219 0.88959 0.93138 0.87212 0.92814 0.91968 0.93189 0.93723 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.57 10.43 71.23 0.74 0.17 16 2 C -0.06 -1.29 7.38 24.75 0.18 -1.11 16 3 C -0.05 -1.49 11.79 83.33 0.98 -0.51 16 4 N -0.51 -20.94 9.48 -313.65 -2.97 -23.92 16 5 C 0.41 14.68 8.97 178.95 1.61 16.29 16 6 N -0.62 -20.42 5.30 -437.65 -2.32 -22.74 16 7 C 0.70 30.39 8.26 179.06 1.48 31.87 16 8 O -0.58 -31.98 14.46 -3.97 -0.06 -32.04 16 9 N -0.61 -24.43 2.97 -836.73 -2.49 -26.91 16 10 C 0.10 2.70 6.43 86.37 0.56 3.25 16 11 C -0.13 -3.44 6.08 30.68 0.19 -3.25 16 12 C -0.11 -3.87 5.11 30.62 0.16 -3.71 16 13 C 0.04 1.89 2.25 -11.46 -0.03 1.86 16 14 H -0.01 -0.82 8.14 -2.39 -0.02 -0.83 16 15 C -0.54 -29.30 8.56 25.60 0.22 -29.08 16 16 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 17 C 0.01 0.53 5.30 84.66 0.45 0.98 16 18 N -0.92 -56.62 11.40 21.45 0.24 -56.38 16 19 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 C 0.14 7.16 5.39 86.35 0.47 7.62 16 24 O -0.21 -5.97 10.80 -8.87 -0.10 -6.06 16 25 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.21 4.56 8.06 -2.91 -0.02 4.54 16 29 H 0.43 9.91 6.28 -92.71 -0.58 9.33 16 30 H 0.10 1.79 5.57 -2.39 -0.01 1.78 16 31 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 37 H 0.04 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.08 4.57 5.16 -2.39 -0.01 4.56 16 Total: -1.00 -82.76 313.76 1.84 -80.92 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.50 Total: 16.19 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: 7.00 Total: 24.38 kcal Atomic # 7 Polarization: -122.41 SS G_CDS: -7.54 Total: -129.95 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.15 Total: -38.10 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -82.76 1.84 -80.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596779039.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.170 kcal (2) G-P(sol) polarization free energy of solvation -82.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds