Wall clock time and date at job start Tue Mar 31 2020 01:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.46593 * 55.00704 * 8 6 5 10 10 O 1.42901 * 109.46728 * 174.99987 * 8 6 5 11 11 C 1.52991 * 109.47302 * 295.00447 * 8 6 5 12 12 C 1.52998 * 117.50059 * 248.74478 * 11 8 6 13 13 C 1.53005 * 117.49869 * 180.08621 * 11 8 6 14 14 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 15 15 C 1.46491 * 126.04623 * 179.87688 * 14 4 3 16 16 C 1.50702 * 109.46957 * 269.71277 * 15 14 4 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 25 25 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 26 26 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 27 27 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 28 28 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 29 29 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 30 30 H 0.96697 * 113.99855 * 60.01253 * 10 8 6 31 31 H 1.09005 * 115.55275 * 34.41492 * 11 8 6 32 32 H 1.09002 * 117.49703 * 0.02562 * 12 11 8 33 33 H 1.08996 * 117.50142 * 145.02016 * 12 11 8 34 34 H 1.09004 * 117.49827 * 214.97785 * 13 11 8 35 35 H 1.09003 * 117.49712 * 359.97438 * 13 11 8 36 36 H 1.09004 * 109.47166 * 149.71543 * 15 14 4 37 37 H 1.08994 * 109.47507 * 29.71250 * 15 14 4 38 38 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 1 6.4813 3.4866 -0.8136 10 8 5.4406 5.1171 -0.0876 11 6 6.6029 3.5480 1.3363 12 6 6.6200 4.7110 2.3303 13 6 7.8830 4.3612 1.5393 14 7 3.6093 -0.6405 0.0013 15 6 4.7870 -1.5116 0.0026 16 6 5.1921 -1.8109 -1.4178 17 1 4.6288 -1.3935 -2.2393 18 6 6.2856 -2.6124 -1.6685 19 7 6.9718 -3.1203 -0.6681 20 14 6.7923 -2.9770 -3.4290 21 1 7.1127 -1.7052 -4.1255 22 1 7.9891 -3.8562 -3.4277 23 1 5.6777 -3.6601 -4.1337 24 7 2.2731 -1.0608 0.0005 25 1 -0.3634 0.0003 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8901 -0.5136 28 1 1.9901 2.1596 -0.0009 29 1 5.6359 1.1294 0.0155 30 1 4.8655 5.4205 0.6281 31 1 6.5786 2.5375 1.7444 32 1 6.0862 5.6194 2.0512 33 1 6.6073 4.4657 3.3922 34 1 8.7006 3.8858 2.0812 35 1 8.1806 5.0393 0.7395 36 1 4.5494 -2.4431 0.5166 37 1 5.6079 -1.0120 0.5169 38 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596894910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:22 Heat of formation + Delta-G solvation = -6.732892 kcal Electronic energy + Delta-G solvation = -21801.553542 eV Core-core repulsion = 18452.791418 eV Total energy + Delta-G solvation = -3348.762124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.50754 -41.08986 -38.87720 -36.48878 -35.96337 -35.52544 -33.86021 -31.10067 -30.39933 -28.65918 -27.81826 -24.80643 -23.53997 -23.21990 -21.96302 -21.33804 -20.80293 -18.96576 -18.76553 -18.06709 -17.86497 -17.20748 -16.67335 -16.37867 -15.97400 -15.63328 -15.39941 -14.78314 -14.60037 -14.43901 -14.07791 -13.95120 -13.60454 -13.41023 -13.14927 -13.02796 -12.85831 -12.71737 -12.39031 -12.30321 -11.99358 -11.93198 -11.72539 -11.56725 -11.34852 -11.25086 -10.77385 -10.59280 -9.66189 -9.10764 -8.37901 -6.55389 0.70917 1.28281 1.36285 1.38464 1.46973 1.55853 2.00528 2.13550 2.33400 2.78126 2.92697 3.08563 3.40233 3.64862 3.81075 3.91460 4.08139 4.21432 4.26268 4.45228 4.59360 4.69496 4.80154 4.81584 4.84795 4.88459 4.93987 4.98618 5.14303 5.18809 5.21614 5.27668 5.49293 5.75163 5.93363 6.09580 6.19692 6.46744 6.55521 6.86584 6.99824 7.16696 8.68389 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.011791 B = 0.006201 C = 0.004516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.206653 B = 4514.511637 C = 6198.836316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 C -0.307 4.307 4 C 0.297 3.703 5 N -0.633 5.633 6 C 0.496 3.504 7 O -0.534 6.534 8 C 0.145 3.855 9 H 0.147 0.853 10 O -0.537 6.537 11 C -0.212 4.212 12 C -0.169 4.169 13 C -0.150 4.150 14 N -0.366 5.366 15 C 0.272 3.728 16 C -0.558 4.558 17 H 0.046 0.954 18 C 0.030 3.970 19 N -0.913 5.913 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.279 1.279 24 N -0.330 5.330 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.167 0.833 29 H 0.422 0.578 30 H 0.392 0.608 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.027 0.973 37 H 0.050 0.950 38 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 14.667 4.645 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.339 4.339 4 C 0.074 3.926 5 N -0.282 5.282 6 C 0.283 3.717 7 O -0.409 6.409 8 C 0.082 3.918 9 H 0.164 0.836 10 O -0.344 6.344 11 C -0.231 4.231 12 C -0.205 4.205 13 C -0.186 4.186 14 N -0.151 5.151 15 C 0.153 3.847 16 C -0.596 4.596 17 H 0.065 0.935 18 C -0.173 4.173 19 N -0.550 5.550 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.196 1.196 23 H -0.204 1.204 24 N -0.155 5.155 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.184 0.816 29 H 0.260 0.740 30 H 0.243 0.757 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.045 0.955 37 H 0.067 0.933 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.387 13.601 4.178 14.233 hybrid contribution 0.485 -0.248 -0.287 0.616 sum 0.872 13.353 3.892 13.936 Atomic orbital electron populations 1.20226 0.83869 1.03891 1.03916 1.22902 0.98778 0.90037 0.99016 1.21471 0.89109 1.00778 1.22558 1.18369 0.89622 0.82907 1.01673 1.43012 1.07604 1.05963 1.71649 1.22369 0.93314 0.81278 0.74698 1.90618 1.27977 1.73889 1.48448 1.21231 0.89470 0.81157 0.99980 0.83604 1.86594 1.70639 1.22870 1.54307 1.22905 1.04087 0.98931 0.97158 1.23120 1.01784 0.98272 0.97352 1.23040 0.90839 1.01744 1.03021 1.49172 1.06322 1.02839 1.56783 1.19230 0.78606 0.89012 0.97805 1.21374 1.13604 1.33003 0.91628 0.93527 1.25658 0.95346 0.94252 1.01996 1.69977 1.19350 1.32815 1.32885 0.85471 0.77784 0.78726 0.78920 1.18971 1.19566 1.20421 1.77310 0.86449 1.23598 1.28179 0.89132 0.88849 0.90879 0.81577 0.73998 0.75670 0.87080 0.87126 0.87747 0.87420 0.87580 0.95481 0.93261 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.23 0.74 -0.96 16 2 C 0.06 2.33 7.21 43.07 0.31 2.64 16 3 C -0.31 -12.64 9.58 22.14 0.21 -12.42 16 4 C 0.30 12.65 7.66 131.32 1.01 13.66 16 5 N -0.63 -21.76 5.30 -308.55 -1.64 -23.40 16 6 C 0.50 15.03 7.12 87.66 0.62 15.65 16 7 O -0.53 -18.99 13.45 15.92 0.21 -18.77 16 8 C 0.14 3.15 3.74 29.85 0.11 3.26 16 9 H 0.15 2.84 8.14 -2.39 -0.02 2.82 16 10 O -0.54 -11.53 12.15 -129.99 -1.58 -13.11 16 11 C -0.21 -3.87 5.67 -10.80 -0.06 -3.93 16 12 C -0.17 -2.48 9.74 30.62 0.30 -2.18 16 13 C -0.15 -2.19 10.19 30.62 0.31 -1.87 16 14 N -0.37 -17.57 3.60 -348.73 -1.26 -18.83 16 15 C 0.27 13.96 6.01 85.64 0.51 14.48 16 16 C -0.56 -30.44 9.39 25.60 0.24 -30.20 16 17 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 18 C 0.03 1.56 5.46 84.66 0.46 2.02 16 19 N -0.91 -49.53 13.29 21.45 0.28 -49.24 16 20 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 N -0.33 -15.74 12.56 -47.45 -0.60 -16.34 16 25 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.17 6.59 5.83 -2.91 -0.02 6.57 16 29 H 0.42 13.39 7.96 -92.70 -0.74 12.65 16 30 H 0.39 6.82 7.30 -74.06 -0.54 6.28 16 31 H 0.11 2.20 8.03 -2.38 -0.02 2.18 16 32 H 0.11 1.42 6.37 -2.39 -0.02 1.41 16 33 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.05 2.41 7.49 -2.39 -0.02 2.40 16 38 H 0.28 13.98 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -67.85 327.68 2.06 -65.80 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.18 Total: 29.85 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: 4.77 Total: 0.14 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -3.20 Total: -107.81 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -1.37 Total: -31.88 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Total: -67.85 2.06 -65.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596894910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.064 kcal (2) G-P(sol) polarization free energy of solvation -67.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds