Wall clock time and date at job start Tue Mar 31 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 113.99805 * 2 1 4 4 C 1.53001 * 109.47235 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46971 * 64.99877 * 4 3 2 6 6 C 1.46502 * 119.99957 * 270.00256 * 5 4 3 7 7 C 1.50699 * 109.47076 * 274.52909 * 6 5 4 8 8 H 1.07997 * 120.00003 * 359.97438 * 7 6 5 9 9 C 1.37877 * 119.99942 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99970 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00112 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47154 * 59.99685 * 11 9 7 13 13 H 1.48500 * 109.47220 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.46883 * 299.99796 * 11 9 7 15 15 C 1.34778 * 120.00239 * 90.00238 * 5 4 3 16 16 O 1.21521 * 119.99885 * 4.90042 * 15 5 4 17 17 C 1.48148 * 120.00569 * 184.90058 * 15 5 4 18 18 N 1.33028 * 120.09262 * 284.19059 * 17 15 5 19 19 C 1.31776 * 119.92293 * 180.02562 * 18 17 15 20 20 C 1.38768 * 120.12393 * 0.02562 * 19 18 17 21 21 N 1.32102 * 120.19396 * 359.97438 * 20 19 18 22 22 C 1.32112 * 120.07221 * 0.02562 * 21 20 19 23 23 C 1.50700 * 120.06427 * 179.97438 * 22 21 20 24 24 H 1.08996 * 109.46809 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47042 * 300.00015 * 1 2 3 26 26 H 1.09004 * 109.46858 * 60.00048 * 1 2 3 27 27 H 1.09004 * 109.47259 * 59.99894 * 3 2 1 28 28 H 1.09001 * 109.47718 * 299.99679 * 3 2 1 29 29 H 1.08996 * 109.47128 * 305.00204 * 4 3 2 30 30 H 1.08999 * 109.47295 * 184.99995 * 4 3 2 31 31 H 1.08995 * 109.47248 * 34.53376 * 6 5 4 32 32 H 1.09008 * 109.46960 * 154.52961 * 6 5 4 33 33 H 0.96995 * 119.99661 * 180.02562 * 10 9 7 34 34 H 1.08006 * 119.93422 * 179.72252 * 19 18 17 35 35 H 1.08002 * 119.90592 * 180.02562 * 20 19 18 36 36 H 1.08999 * 109.47138 * 264.74310 * 23 22 21 37 37 H 1.09005 * 109.46958 * 24.73935 * 23 22 21 38 38 H 1.09001 * 109.47215 * 144.73953 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1063 -0.8925 -1.3402 7 6 5.4642 -1.3079 -0.8358 8 1 6.1612 -0.5616 -0.4842 9 6 5.8173 -2.6407 -0.8241 10 7 4.9687 -3.5495 -1.2527 11 14 7.5002 -3.1557 -0.1981 12 1 7.6531 -2.7316 1.2168 13 1 7.6321 -4.6319 -0.2899 14 1 8.5536 -2.5127 -1.0241 15 6 4.2634 1.3329 -2.3200 16 8 4.2422 2.5439 -2.2208 17 6 4.6043 0.7019 -3.6163 18 7 5.8046 0.1579 -3.7981 19 6 6.1045 -0.4020 -4.9527 20 6 5.1708 -0.4247 -5.9791 21 7 3.9775 0.1141 -5.8037 22 6 3.6686 0.6775 -4.6493 23 6 2.3074 1.2925 -4.4497 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6887 1.8464 -0.8900 29 1 3.8508 0.5686 0.8426 30 1 3.9784 2.1766 0.0902 31 1 3.3334 -1.3640 -0.7334 32 1 3.9935 -1.2043 -2.3787 33 1 5.2170 -4.4871 -1.2441 34 1 7.0805 -0.8398 -5.1021 35 1 5.4202 -0.8849 -6.9238 36 1 2.3579 2.3616 -4.6563 37 1 1.5942 0.8246 -5.1283 38 1 1.9856 1.1363 -3.4200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597135872.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:01:23 Heat of formation + Delta-G solvation = -52.807219 kcal Electronic energy + Delta-G solvation = -22668.950941 eV Core-core repulsion = 19318.190884 eV Total energy + Delta-G solvation = -3350.760056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.32497 -40.50774 -38.70015 -36.74037 -35.55495 -34.58838 -33.93575 -31.37826 -29.25293 -28.88065 -27.30314 -26.38943 -24.85689 -24.07999 -23.66503 -20.84485 -18.98398 -18.63679 -18.41547 -17.74053 -17.17750 -17.02876 -16.72757 -16.46547 -16.00295 -15.82345 -15.55385 -15.08785 -14.60455 -14.25604 -13.90714 -13.78154 -13.63769 -13.39922 -13.31484 -13.10353 -12.81202 -12.76228 -12.63584 -12.59916 -12.18658 -12.09684 -11.92393 -11.71544 -11.33609 -10.61526 -10.54948 -10.15366 -10.00861 -9.57469 -8.16923 -6.28663 -0.37484 0.12440 1.36333 1.41833 1.42530 1.50914 2.05054 2.42456 2.67562 2.93816 3.05097 3.14328 3.21675 3.49101 3.64674 4.09059 4.13393 4.18136 4.26727 4.37870 4.39986 4.52207 4.55776 4.57371 4.61059 4.66079 4.85387 4.86476 4.92776 4.95589 5.22668 5.35574 5.61013 5.78252 6.08133 6.21956 6.28617 6.44390 6.73508 6.78347 7.06407 7.40205 8.89784 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.009381 C = 0.006064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.284120 B = 2984.134610 C = 4616.118001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.412 6.412 3 C 0.055 3.945 4 C 0.111 3.889 5 N -0.573 5.573 6 C 0.272 3.728 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.021 3.979 10 N -0.924 5.924 11 Si 0.955 3.045 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.273 1.273 15 C 0.578 3.422 16 O -0.575 6.575 17 C 0.033 3.967 18 N -0.422 5.422 19 C 0.039 3.961 20 C 0.074 3.926 21 N -0.450 5.450 22 C 0.096 3.904 23 C -0.094 4.094 24 H 0.086 0.914 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.088 0.912 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.030 0.970 32 H 0.002 0.998 33 H 0.265 0.735 34 H 0.202 0.798 35 H 0.221 0.779 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.673 6.290 -4.576 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.022 4.022 4 C -0.011 4.011 5 N -0.302 5.302 6 C 0.152 3.848 7 C -0.565 4.565 8 H 0.066 0.934 9 C -0.178 4.178 10 N -0.563 5.563 11 Si 0.781 3.219 12 H -0.196 1.196 13 H -0.206 1.206 14 H -0.198 1.198 15 C 0.364 3.636 16 O -0.456 6.456 17 C -0.108 4.108 18 N -0.138 5.138 19 C -0.123 4.123 20 C -0.088 4.088 21 N -0.166 5.166 22 C -0.043 4.043 23 C -0.152 4.152 24 H 0.104 0.896 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.106 0.894 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.118 0.882 31 H 0.048 0.952 32 H 0.020 0.980 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.237 0.763 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.650 6.560 -4.458 9.738 hybrid contribution 0.870 -0.534 0.397 1.095 sum -4.780 6.027 -4.061 8.698 Atomic orbital electron populations 1.22884 0.79854 1.03282 1.00869 1.88024 1.21295 1.28271 1.95524 1.22953 0.92824 0.84908 1.01532 1.21662 0.93539 0.99740 0.86164 1.48088 1.62283 1.09132 1.10667 1.18896 0.96358 0.73855 0.95732 1.21470 1.00237 0.92354 1.42483 0.93355 1.25593 1.00581 0.96279 0.95362 1.70038 1.36985 1.01524 1.47800 0.85652 0.80223 0.76993 0.79066 1.19633 1.20603 1.19798 1.17885 0.76453 0.85809 0.83471 1.90663 1.56169 1.13917 1.84874 1.21788 0.92990 0.99639 0.96360 1.68444 1.17728 1.04215 1.23440 1.24446 1.03073 0.96378 0.88429 1.24665 0.88344 0.94049 1.01738 1.68403 1.19605 1.07713 1.20844 1.22403 0.97769 0.94946 0.89183 1.20717 0.89913 1.01607 1.02960 0.89578 0.92269 0.93543 0.89367 0.93424 0.89685 0.88219 0.95182 0.98020 0.92604 0.78166 0.76300 0.88506 0.88015 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.91 16 2 O -0.41 -14.28 9.46 -148.98 -1.41 -15.69 16 3 C 0.06 1.69 6.28 71.98 0.45 2.15 16 4 C 0.11 4.14 5.87 86.38 0.51 4.64 16 5 N -0.57 -25.70 2.42 -829.22 -2.01 -27.71 16 6 C 0.27 14.13 4.92 85.63 0.42 14.55 16 7 C -0.53 -29.17 9.38 25.60 0.24 -28.93 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.02 1.17 5.46 84.65 0.46 1.64 16 10 N -0.92 -53.37 13.29 21.45 0.28 -53.09 16 11 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 12 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 13 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 C 0.58 25.96 5.88 86.88 0.51 26.47 16 16 O -0.58 -26.40 16.66 -3.78 -0.06 -26.47 16 17 C 0.03 1.42 4.54 41.88 0.19 1.61 16 18 N -0.42 -18.20 10.38 -184.33 -1.91 -20.12 16 19 C 0.04 1.28 11.22 84.83 0.95 2.24 16 20 C 0.07 2.06 11.23 84.78 0.95 3.01 16 21 N -0.45 -14.89 10.42 -182.24 -1.90 -16.79 16 22 C 0.10 3.54 6.82 42.80 0.29 3.83 16 23 C -0.09 -2.85 9.68 71.24 0.69 -2.16 16 24 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 3.25 8.07 -2.39 -0.02 3.23 16 30 H 0.10 3.49 7.36 -2.39 -0.02 3.47 16 31 H 0.03 1.68 7.05 -2.39 -0.02 1.66 16 32 H 0.00 0.10 6.62 -2.38 -0.02 0.09 16 33 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 34 H 0.20 4.97 8.06 -2.91 -0.02 4.95 16 35 H 0.22 3.67 8.06 -2.91 -0.02 3.64 16 36 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 38 H 0.06 2.08 7.28 -2.39 -0.02 2.06 16 Total: -1.00 -72.43 331.39 3.00 -69.44 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 1.06 Total: 13.64 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: 6.92 Total: 30.96 kcal Atomic # 7 Polarization: -112.17 SS G_CDS: -5.53 Total: -117.70 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -1.47 Total: -42.16 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.43 3.00 -69.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597135872.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.629 kcal (2) G-P(sol) polarization free energy of solvation -72.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds