Wall clock time and date at job start Tue Mar 31 2020 01:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 H 1.08996 * 109.47352 * 55.00060 * 8 6 5 10 10 O 1.42902 * 109.46808 * 175.00222 * 8 6 5 11 11 C 1.52998 * 109.46953 * 294.99477 * 8 6 5 12 12 C 1.53007 * 117.50054 * 248.74947 * 11 8 6 13 13 C 1.53000 * 117.49876 * 180.09066 * 11 8 6 14 14 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 15 15 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 16 16 C 1.46509 * 125.97450 * 359.96761 * 15 2 1 17 17 C 1.50698 * 109.47025 * 89.99735 * 16 15 2 18 18 H 1.08000 * 120.00464 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99358 * 179.97438 * 17 16 15 20 20 N 1.31506 * 120.00418 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99496 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47105 * 90.00179 * 21 19 17 23 23 H 1.48499 * 109.46684 * 210.00001 * 21 19 17 24 24 H 1.48503 * 109.47226 * 329.99788 * 21 19 17 25 25 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 28 28 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 29 29 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 30 30 H 0.96699 * 114.00632 * 59.98917 * 10 8 6 31 31 H 1.08999 * 115.55464 * 34.42192 * 11 8 6 32 32 H 1.08998 * 117.49729 * 0.02562 * 12 11 8 33 33 H 1.08996 * 117.50054 * 145.01994 * 12 11 8 34 34 H 1.08994 * 117.50359 * 214.98252 * 13 11 8 35 35 H 1.09008 * 117.49734 * 359.97438 * 13 11 8 36 36 H 1.08994 * 109.46750 * 210.00045 * 16 15 2 37 37 H 1.09004 * 109.46474 * 329.99737 * 16 15 2 38 38 H 0.96998 * 120.00265 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 1 6.4975 3.4367 -0.8261 10 8 5.4592 5.0653 -0.0926 11 6 6.6300 3.4953 1.3233 12 6 6.6510 4.6571 2.3188 13 6 7.9103 4.3094 1.5209 14 7 3.6337 -0.6577 -0.0036 15 7 2.3017 -1.0909 -0.0059 16 6 1.8500 -2.4847 -0.0128 17 6 1.6945 -2.9553 -1.4359 18 1 1.9108 -2.2836 -2.2535 19 6 1.2770 -4.2437 -1.6941 20 7 1.0140 -5.0617 -0.6985 21 14 1.0848 -4.8273 -3.4582 22 1 2.3659 -5.4131 -3.9281 23 1 0.0159 -5.8560 -3.5255 24 1 0.7198 -3.6768 -4.3233 25 1 -0.3633 -0.0056 1.0277 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8928 -0.5090 28 1 1.9719 2.1210 -0.0004 29 1 5.6584 1.0776 0.0049 30 1 4.8873 5.3672 0.6263 31 1 6.6086 2.4843 1.7302 32 1 6.1150 5.5654 2.0436 33 1 6.6438 4.4104 3.3804 34 1 8.7310 3.8341 2.0580 35 1 8.2033 4.9888 0.7204 36 1 2.5849 -3.1072 0.4976 37 1 0.8916 -2.5584 0.5012 38 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597459749.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:33 Heat of formation + Delta-G solvation = -6.734837 kcal Electronic energy + Delta-G solvation = -21294.807557 eV Core-core repulsion = 17946.045349 eV Total energy + Delta-G solvation = -3348.762208 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37700 -41.13367 -38.86126 -36.55813 -35.84595 -35.30304 -33.13883 -32.67427 -29.78324 -28.26994 -27.88835 -25.04343 -23.43413 -23.14298 -21.93308 -21.28578 -20.81464 -18.86135 -18.63620 -17.90827 -17.73884 -17.25046 -16.66593 -16.36929 -16.11412 -15.68112 -15.37708 -14.87996 -14.64505 -14.31695 -13.94158 -13.81934 -13.65050 -13.59511 -13.18381 -12.97794 -12.76558 -12.70461 -12.37364 -12.27219 -12.11864 -11.88135 -11.56318 -11.49152 -11.37069 -11.22224 -10.75329 -10.53331 -9.61935 -9.18117 -8.34276 -6.52021 0.83817 1.27706 1.34239 1.37576 1.39083 1.50506 2.13909 2.22937 2.36569 2.81804 2.95631 3.13760 3.47316 3.67924 3.86084 3.95369 4.12560 4.13691 4.28977 4.43773 4.49420 4.73733 4.75407 4.82762 4.85027 4.95589 4.97878 5.01253 5.10983 5.17191 5.23126 5.29755 5.52207 5.79350 5.89942 6.17313 6.23254 6.49269 6.60301 6.91836 7.05393 7.19153 8.71824 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.003464 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.366286 B = 8081.343283 C = 8304.111438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 C -0.300 4.300 4 C 0.269 3.731 5 N -0.618 5.618 6 C 0.494 3.506 7 O -0.543 6.543 8 C 0.145 3.855 9 H 0.153 0.847 10 O -0.541 6.541 11 C -0.206 4.206 12 C -0.177 4.177 13 C -0.148 4.148 14 N -0.356 5.356 15 N -0.342 5.342 16 C 0.275 3.725 17 C -0.555 4.555 18 H 0.049 0.951 19 C 0.024 3.976 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.270 1.270 25 H 0.094 0.906 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.165 0.835 29 H 0.426 0.574 30 H 0.391 0.609 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.025 0.975 37 H 0.052 0.948 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.681 17.362 4.535 20.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.043 4.043 3 C -0.331 4.331 4 C 0.015 3.985 5 N -0.269 5.269 6 C 0.282 3.718 7 O -0.418 6.418 8 C 0.082 3.918 9 H 0.170 0.830 10 O -0.348 6.348 11 C -0.225 4.225 12 C -0.214 4.214 13 C -0.185 4.185 14 N -0.186 5.186 15 N -0.124 5.124 16 C 0.157 3.843 17 C -0.593 4.593 18 H 0.067 0.933 19 C -0.178 4.178 20 N -0.555 5.555 21 Si 0.795 3.205 22 H -0.200 1.200 23 H -0.195 1.195 24 H -0.195 1.195 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.183 0.817 29 H 0.264 0.736 30 H 0.242 0.758 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.123 0.877 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.889 16.395 4.062 19.572 hybrid contribution -0.549 -0.451 -0.210 0.741 sum 9.339 15.944 3.851 18.875 Atomic orbital electron populations 1.20507 0.85356 1.04388 1.04154 1.21757 0.96703 0.86471 0.99366 1.21419 0.90059 0.99842 1.21776 1.19385 0.88910 0.89280 1.00887 1.42668 1.06977 1.05162 1.72103 1.22454 0.93215 0.81556 0.74609 1.90639 1.28304 1.74185 1.48673 1.21298 0.89411 0.80973 1.00156 0.82992 1.86586 1.70841 1.23273 1.54096 1.22927 1.03570 0.98963 0.97033 1.23117 1.02260 0.98602 0.97411 1.23036 0.90813 1.01781 1.02865 1.77174 1.00061 1.09967 1.31430 1.48803 1.01767 1.07532 1.54326 1.19255 0.94937 0.72367 0.97789 1.21436 1.47676 0.98409 0.91753 0.93282 1.25725 0.93899 0.95869 1.02260 1.69992 1.45000 1.07422 1.33119 0.85358 0.78299 0.78194 0.78661 1.19956 1.19485 1.19464 0.88799 0.91392 0.87998 0.81749 0.73597 0.75757 0.86466 0.87537 0.87937 0.87227 0.87703 0.95672 0.93006 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.88 9.89 71.24 0.70 -2.18 16 2 C 0.09 3.70 6.92 41.38 0.29 3.99 16 3 C -0.30 -12.29 9.52 22.11 0.21 -12.08 16 4 C 0.27 10.85 8.11 133.32 1.08 11.93 16 5 N -0.62 -17.96 5.34 -307.50 -1.64 -19.60 16 6 C 0.49 13.14 7.12 87.66 0.62 13.76 16 7 O -0.54 -18.34 13.46 15.93 0.21 -18.13 16 8 C 0.14 2.51 3.74 29.85 0.11 2.62 16 9 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 10 O -0.54 -10.18 12.15 -129.99 -1.58 -11.76 16 11 C -0.21 -2.81 5.67 -10.79 -0.06 -2.87 16 12 C -0.18 -2.12 9.74 30.62 0.30 -1.82 16 13 C -0.15 -1.56 10.19 30.62 0.31 -1.25 16 14 N -0.36 -16.61 12.59 -54.44 -0.69 -17.30 16 15 N -0.34 -16.56 3.59 -338.43 -1.22 -17.78 16 16 C 0.28 14.56 5.81 85.63 0.50 15.06 16 17 C -0.55 -31.12 9.39 25.60 0.24 -30.88 16 18 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 19 C 0.02 1.29 5.46 84.66 0.46 1.75 16 20 N -0.92 -51.64 13.29 21.45 0.28 -51.36 16 21 Si 0.97 42.99 29.54 68.60 2.03 45.02 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 25 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 26 H 0.07 2.49 7.71 -2.39 -0.02 2.47 16 27 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 28 H 0.17 6.51 5.92 -2.91 -0.02 6.49 16 29 H 0.43 9.57 8.82 -92.71 -0.82 8.75 16 30 H 0.39 6.11 7.31 -74.06 -0.54 5.57 16 31 H 0.12 1.63 8.03 -2.39 -0.02 1.61 16 32 H 0.11 1.17 6.37 -2.39 -0.02 1.16 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 2.71 7.65 -2.39 -0.02 2.69 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -70.55 327.76 1.91 -68.64 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -0.26 Total: 24.24 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 4.77 Total: -1.97 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -3.26 Total: -106.04 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: -1.37 Total: -29.89 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -70.55 1.91 -68.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597459749.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.901 kcal (2) G-P(sol) polarization free energy of solvation -70.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds