Wall clock time and date at job start Tue Mar 31 2020 02:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35322 * 128.04037 * 2 1 4 4 O 1.34013 * 106.66648 * 180.24447 * 3 2 1 5 5 N 1.20907 * 111.84840 * 359.74680 * 4 3 2 6 6 C 1.30980 * 111.44233 * 359.97438 * 5 4 3 7 7 C 1.48331 * 126.94237 * 179.97438 * 6 5 4 8 8 O 1.21494 * 120.00022 * 180.02562 * 7 6 5 9 9 N 1.34778 * 119.99514 * 0.03134 * 7 6 5 10 10 C 1.46505 * 119.99485 * 179.97438 * 9 7 6 11 11 C 1.53076 * 109.45150 * 84.78885 * 10 9 7 12 12 C 1.53183 * 109.29478 * 181.24130 * 11 10 9 13 13 N 1.46930 * 108.89468 * 305.57480 * 12 11 10 14 14 C 1.36937 * 120.63259 * 233.51494 * 13 12 11 15 15 H 1.08000 * 119.99761 * 151.83401 * 14 13 12 16 16 C 1.38806 * 120.00219 * 331.83653 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.07619 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07294 * 16 14 13 19 19 H 1.48506 * 109.46812 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47258 * 119.99807 * 18 16 14 21 21 H 1.48499 * 109.47344 * 240.00342 * 18 16 14 22 22 C 1.46925 * 118.73328 * 53.53726 * 13 12 11 23 23 C 1.53033 * 109.45770 * 204.99541 * 10 9 7 24 24 H 1.08996 * 109.46940 * 270.15825 * 1 2 3 25 25 H 1.09003 * 109.47478 * 30.16036 * 1 2 3 26 26 H 1.09001 * 109.47192 * 150.16192 * 1 2 3 27 27 H 1.07991 * 126.66284 * 359.95231 * 3 2 1 28 28 H 0.96997 * 120.00409 * 359.97438 * 9 7 6 29 29 H 1.08990 * 109.46254 * 324.97445 * 10 9 7 30 30 H 1.09005 * 109.39190 * 61.36037 * 11 10 9 31 31 H 1.09004 * 109.62337 * 301.25830 * 11 10 9 32 32 H 1.09005 * 109.58619 * 185.72200 * 12 11 10 33 33 H 1.08998 * 109.58733 * 65.43770 * 12 11 10 34 34 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.58688 * 66.18006 * 22 13 12 36 36 H 1.08996 * 109.58570 * 186.45714 * 22 13 12 37 37 H 1.09003 * 109.49897 * 58.66679 * 23 10 9 38 38 H 1.09004 * 109.50093 * 298.57148 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5774 -0.0055 5 7 3.5988 -0.6317 -0.0037 6 6 2.3837 -1.1206 0.0036 7 6 1.9992 -2.5532 0.0073 8 8 0.8255 -2.8671 0.0137 9 7 2.9518 -3.5065 0.0036 10 6 2.5720 -4.9215 0.0078 11 6 2.3055 -5.3820 -1.4275 12 6 1.8788 -6.8532 -1.4160 13 7 2.8980 -7.6387 -0.7068 14 6 3.4695 -8.7346 -1.2964 15 1 4.4721 -9.0317 -1.0264 16 6 2.7603 -9.4635 -2.2411 17 7 1.4547 -9.3252 -2.3347 18 14 3.6587 -10.6408 -3.3796 19 1 5.1116 -10.6136 -3.0733 20 1 3.1371 -12.0168 -3.1806 21 1 3.4418 -10.2282 -4.7896 22 6 3.2919 -7.2263 0.6472 23 6 3.7062 -5.7519 0.6127 24 1 -0.3633 0.0028 1.0276 25 1 -0.3634 0.8885 -0.5163 26 1 -0.3633 -0.8914 -0.5113 27 1 2.0559 2.1074 -0.0007 28 1 3.8888 -3.2559 -0.0018 29 1 1.6683 -5.0532 0.6027 30 1 3.2152 -5.2716 -2.0178 31 1 1.5118 -4.7764 -1.8649 32 1 1.7861 -7.2148 -2.4402 33 1 0.9208 -6.9518 -0.9056 34 1 0.9590 -9.8348 -2.9945 35 1 2.4496 -7.3533 1.3274 36 1 4.1298 -7.8358 0.9856 37 1 3.9088 -5.4071 1.6267 38 1 4.6035 -5.6404 0.0040 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601121215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:25 Heat of formation + Delta-G solvation = 19.938134 kcal Electronic energy + Delta-G solvation = -21726.873643 eV Core-core repulsion = 18379.268062 eV Total energy + Delta-G solvation = -3347.605581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.15112 -41.07036 -39.04731 -36.20683 -35.67790 -34.18472 -33.25748 -31.82011 -31.24335 -29.13377 -27.28864 -25.66131 -23.98992 -23.52019 -22.66873 -21.61818 -21.08341 -19.40856 -18.85139 -18.69869 -17.60888 -17.30971 -16.72650 -16.09366 -15.79531 -15.40446 -15.39956 -14.96871 -14.70541 -14.40588 -14.23686 -14.12368 -14.08531 -13.35070 -13.24219 -13.07142 -12.72853 -12.62550 -12.39481 -12.19333 -12.06426 -11.91686 -11.62336 -11.54646 -11.38340 -11.22057 -10.62238 -10.39569 -10.18178 -8.74679 -7.90005 -5.36603 0.05619 0.71983 1.45790 1.47610 1.58425 1.78881 2.00242 2.28496 2.49774 2.85329 3.26177 3.54609 3.62987 3.77048 3.90856 3.97859 4.08748 4.23772 4.40002 4.44211 4.59832 4.69137 4.76964 4.78349 4.82775 4.93165 4.96006 4.98701 5.06611 5.25168 5.31150 5.37501 5.41654 5.61131 5.65809 6.27677 6.36209 6.90623 7.05677 7.10737 7.80932 8.33817 9.17381 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035139 B = 0.003585 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.638920 B = 7808.819353 C = 7997.466874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.175 4.175 3 C -0.032 4.032 4 O 0.134 5.866 5 N -0.348 5.348 6 C -0.057 4.057 7 C 0.591 3.409 8 O -0.553 6.553 9 N -0.699 5.699 10 C 0.161 3.839 11 C -0.131 4.131 12 C 0.184 3.816 13 N -0.610 5.610 14 C -0.263 4.263 15 H 0.073 0.927 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.969 3.031 19 H -0.263 1.263 20 H -0.292 1.292 21 H -0.292 1.292 22 C 0.143 3.857 23 C -0.123 4.123 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.055 0.945 27 H 0.279 0.721 28 H 0.412 0.588 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.056 0.944 33 H -0.006 1.006 34 H 0.250 0.750 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.171 23.461 5.834 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.181 4.181 3 C -0.112 4.112 4 O 0.056 5.944 5 N -0.047 5.047 6 C -0.214 4.214 7 C 0.376 3.624 8 O -0.430 6.430 9 N -0.350 5.350 10 C 0.057 3.943 11 C -0.171 4.171 12 C 0.057 3.943 13 N -0.333 5.333 14 C -0.393 4.393 15 H 0.091 0.909 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.219 1.219 21 H -0.218 1.218 22 C 0.017 3.983 23 C -0.162 4.162 24 H 0.098 0.902 25 H 0.123 0.877 26 H 0.074 0.926 27 H 0.295 0.705 28 H 0.249 0.751 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.012 0.988 34 H 0.059 0.941 35 H 0.034 0.966 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.457 22.464 5.753 23.445 hybrid contribution -0.478 -0.857 -0.776 1.251 sum 2.978 21.607 4.977 22.372 Atomic orbital electron populations 1.20216 0.85919 1.03974 1.03498 1.21703 0.99967 0.90097 1.06314 1.26687 0.80299 1.02629 1.01634 1.84737 1.30803 1.14249 1.64625 1.74166 1.21374 0.92756 1.16358 1.23447 0.90892 0.96575 1.10507 1.17276 0.85404 0.83453 0.76313 1.90771 1.18714 1.82359 1.51146 1.46009 1.09952 1.05927 1.73085 1.20822 0.98698 0.78353 0.96390 1.22333 1.00540 0.97726 0.96539 1.20455 0.89209 0.87375 0.97229 1.44354 1.46445 1.29621 1.12926 1.19598 0.96478 1.03752 1.19520 0.90918 1.25870 0.95612 1.00025 1.03269 1.70204 1.06504 1.44828 1.36766 0.85180 0.78691 0.78004 0.78400 1.18721 1.21913 1.21847 1.21023 0.97857 0.93337 0.86054 1.22156 0.97065 0.95600 1.01428 0.90192 0.87670 0.92590 0.70542 0.75139 0.91483 0.92324 0.93313 0.92515 0.98777 0.94106 0.96616 0.91231 0.89129 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.34 10.01 71.23 0.71 -0.63 16 2 C -0.18 -3.35 6.34 -19.53 -0.12 -3.48 16 3 C -0.03 -0.35 12.24 67.15 0.82 0.48 16 4 O 0.13 2.24 11.18 71.91 0.80 3.05 16 5 N -0.35 -8.14 11.84 -49.51 -0.59 -8.73 16 6 C -0.06 -1.49 7.19 42.96 0.31 -1.18 16 7 C 0.59 19.25 7.81 86.93 0.68 19.92 16 8 O -0.55 -21.42 15.00 -3.70 -0.06 -21.48 16 9 N -0.70 -21.45 5.08 -444.77 -2.26 -23.70 16 10 C 0.16 5.77 2.41 45.03 0.11 5.88 16 11 C -0.13 -5.46 5.66 30.68 0.17 -5.29 16 12 C 0.18 9.41 5.30 86.36 0.46 9.87 16 13 N -0.61 -31.17 3.00 -699.11 -2.09 -33.26 16 14 C -0.26 -14.58 9.58 84.03 0.81 -13.77 16 15 H 0.07 3.86 7.89 -2.91 -0.02 3.83 16 16 C -0.05 -2.97 4.92 84.86 0.42 -2.56 16 17 N -0.94 -56.81 11.20 21.65 0.24 -56.57 16 18 Si 0.97 45.29 29.59 68.60 2.03 47.32 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 22 C 0.14 5.87 6.52 86.36 0.56 6.43 16 23 C -0.12 -4.01 5.55 30.67 0.17 -3.84 16 24 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.06 1.34 6.89 -2.39 -0.02 1.32 16 27 H 0.28 -0.48 8.06 -2.92 -0.02 -0.51 16 28 H 0.41 10.85 8.36 -92.71 -0.78 10.07 16 29 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 30 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 32 H 0.06 3.26 6.06 -2.38 -0.01 3.25 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H 0.25 14.64 8.31 -92.71 -0.77 13.86 16 35 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 2.69 7.93 -2.39 -0.02 2.68 16 37 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -72.98 317.94 3.48 -69.49 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 0.31 Total: 12.05 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 5.09 Total: 11.84 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -4.70 Total: -122.26 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.75 Total: -18.43 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -72.98 3.48 -69.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601121215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.432 kcal (2) G-P(sol) polarization free energy of solvation -72.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds