Wall clock time and date at job start Tue Mar 31 2020 02:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35238 * 126.38783 * 2 1 4 4 N 1.33457 * 107.83436 * 179.97438 * 3 2 1 5 5 C 1.31286 * 108.70986 * 0.02562 * 4 3 2 6 6 C 1.47457 * 125.71086 * 180.25543 * 5 4 3 7 7 O 1.21595 * 120.00048 * 187.50569 * 6 5 4 8 8 N 1.34780 * 119.99672 * 7.51333 * 6 5 4 9 9 C 1.47072 * 120.88032 * 6.64849 * 8 6 5 10 10 C 1.53707 * 108.27624 * 128.75601 * 9 8 6 11 11 N 1.46894 * 109.25556 * 54.08116 * 10 9 8 12 12 C 1.46900 * 111.00295 * 172.60965 * 11 10 9 13 13 C 1.50705 * 109.46807 * 60.78102 * 12 11 10 14 14 H 1.07998 * 120.00007 * 356.22668 * 13 12 11 15 15 C 1.37877 * 119.99837 * 176.22940 * 13 12 11 16 16 N 1.31506 * 120.00124 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99904 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.46971 * 90.00331 * 17 15 13 19 19 H 1.48500 * 109.47380 * 210.00308 * 17 15 13 20 20 H 1.48498 * 109.47132 * 330.00251 * 17 15 13 21 21 C 1.46903 * 111.27039 * 296.75882 * 11 10 9 22 22 C 1.47082 * 120.87954 * 186.92833 * 8 6 5 23 23 O 1.34298 * 126.39436 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46719 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46779 * 300.01876 * 1 2 3 26 26 H 1.08990 * 109.47284 * 60.02214 * 1 2 3 27 27 H 1.08000 * 126.08783 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.63091 * 248.51802 * 9 8 6 29 29 H 1.08998 * 109.63398 * 9.10659 * 9 8 6 30 30 H 1.09002 * 109.64286 * 294.07671 * 10 9 8 31 31 H 1.08995 * 109.42111 * 173.94602 * 10 9 8 32 32 H 1.08997 * 109.47417 * 180.78182 * 12 11 10 33 33 H 1.08998 * 109.46930 * 300.78533 * 12 11 10 34 34 H 0.97001 * 120.00568 * 179.97438 * 16 15 13 35 35 H 1.09006 * 109.49167 * 303.14798 * 21 11 10 36 36 H 1.08998 * 109.51444 * 183.07837 * 21 11 10 37 37 H 1.09000 * 109.62329 * 350.89427 * 22 8 6 38 38 H 1.08990 * 109.62657 * 111.47566 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0887 0.0000 4 7 3.5746 0.6640 0.0006 5 6 3.5781 -0.6488 0.0004 6 6 4.7778 -1.5062 0.0062 7 8 4.6660 -2.7091 -0.1321 8 7 5.9981 -0.9566 0.1649 9 6 6.1473 0.4726 0.4783 10 6 7.0681 0.6042 1.7019 11 7 8.3258 -0.1084 1.4408 12 6 9.3021 0.1373 2.5105 13 6 8.7470 -0.3589 3.8208 14 1 7.7436 -0.7556 3.8666 15 6 9.5203 -0.3063 4.9611 16 7 9.0362 -0.7397 6.1044 17 14 11.2561 0.3794 4.8818 18 1 11.2227 1.8420 5.1362 19 1 12.0975 -0.2830 5.9106 20 1 11.8281 0.1241 3.5353 21 6 8.0949 -1.5478 1.2592 22 6 7.2161 -1.7689 0.0234 23 8 2.3039 -1.0810 -0.0005 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5141 0.8898 26 1 -0.3633 0.5134 -0.8901 27 1 1.9841 2.1186 0.0004 28 1 6.5890 0.9900 -0.3734 29 1 5.1713 0.9017 0.7050 30 1 6.5801 0.1726 2.5758 31 1 7.2784 1.6578 1.8856 32 1 10.2286 -0.3907 2.2851 33 1 9.5014 1.2065 2.5819 34 1 9.5802 -0.7030 6.9067 35 1 7.5926 -1.9494 2.1393 36 1 9.0497 -2.0552 1.1220 37 1 6.9469 -2.8225 -0.0506 38 1 7.7584 -1.4628 -0.8711 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601256819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:03 Heat of formation + Delta-G solvation = -5.859877 kcal Electronic energy + Delta-G solvation = -21977.915479 eV Core-core repulsion = 18629.191212 eV Total energy + Delta-G solvation = -3348.724267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.65473 -41.24165 -39.13782 -36.65649 -35.75197 -34.38348 -33.59475 -32.13944 -30.60577 -28.75529 -27.18743 -24.94133 -24.68561 -23.71516 -22.95172 -22.07615 -20.70655 -19.12369 -18.46436 -18.22984 -18.02901 -16.86786 -16.53515 -16.33825 -16.04957 -15.84153 -15.51384 -15.12871 -14.94584 -14.48435 -14.35913 -14.04290 -13.97097 -13.79078 -13.42806 -13.13620 -13.04597 -12.77469 -12.52105 -12.37372 -12.19659 -12.01237 -11.88477 -11.73784 -11.67558 -10.99659 -10.80102 -10.08811 -9.77671 -9.07584 -8.32382 -6.39110 -0.34509 0.87358 1.10720 1.37434 1.39170 1.50882 1.87133 2.16984 2.34054 2.71443 3.02966 3.24364 3.61716 3.81437 3.93418 4.01838 4.20091 4.26699 4.32312 4.32915 4.50545 4.58099 4.69391 4.75961 4.81118 4.97165 4.99742 5.04299 5.05659 5.07358 5.15772 5.19209 5.42443 5.47159 5.91135 6.08300 6.27920 6.29291 6.30450 6.67759 6.71292 7.28272 8.84307 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.004133 C = 0.003944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.357892 B = 6773.500271 C = 7098.153509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.012 4.012 3 C -0.052 4.052 4 N -0.427 5.427 5 C 0.106 3.894 6 C 0.606 3.394 7 O -0.562 6.562 8 N -0.578 5.578 9 C 0.096 3.904 10 C 0.051 3.949 11 N -0.523 5.523 12 C 0.159 3.841 13 C -0.553 4.553 14 H 0.025 0.975 15 C 0.009 3.991 16 N -0.951 5.951 17 Si 0.955 3.045 18 H -0.265 1.265 19 H -0.288 1.288 20 H -0.240 1.240 21 C 0.051 3.949 22 C 0.126 3.874 23 O -0.187 6.187 24 H 0.081 0.919 25 H 0.119 0.881 26 H 0.124 0.876 27 H 0.234 0.766 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.005 0.995 31 H 0.091 0.909 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.266 0.734 35 H 0.006 0.994 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 6.441 -15.751 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.194 4.194 4 N -0.162 5.162 5 C -0.097 4.097 6 C 0.392 3.608 7 O -0.441 6.441 8 N -0.310 5.310 9 C -0.026 4.026 10 C -0.079 4.079 11 N -0.246 5.246 12 C 0.032 3.968 13 C -0.592 4.592 14 H 0.044 0.956 15 C -0.189 4.189 16 N -0.591 5.591 17 Si 0.778 3.222 18 H -0.190 1.190 19 H -0.214 1.214 20 H -0.163 1.163 21 C -0.078 4.078 22 C 0.004 3.996 23 O -0.070 6.070 24 H 0.100 0.900 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.250 0.750 28 H 0.115 0.885 29 H 0.153 0.847 30 H 0.023 0.977 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.024 0.976 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.083 6.189 -16.102 21.650 hybrid contribution -0.202 -0.841 1.730 1.934 sum -13.285 5.348 -14.372 20.289 Atomic orbital electron populations 1.20727 0.79574 1.05708 1.06767 1.25155 0.97285 0.83528 1.00780 1.24041 0.86210 1.02604 1.06595 1.70205 1.24741 1.07388 1.13833 1.24939 0.84343 0.89718 1.10703 1.16296 0.81344 0.85192 0.77953 1.90808 1.85912 1.14717 1.52681 1.47928 1.04101 1.12471 1.66538 1.22994 1.03232 0.78744 0.97621 1.22421 0.90296 0.99657 0.95484 1.62496 1.10277 1.08548 1.43301 1.20120 0.92531 0.97011 0.87170 1.21915 1.00651 1.41952 0.94685 0.95627 1.26002 1.03441 0.94909 0.94573 1.70098 1.39597 1.48783 1.00638 0.85600 0.78449 0.78887 0.79305 1.18963 1.21391 1.16271 1.22279 0.99793 0.90137 0.95566 1.21975 0.82631 0.96137 0.98821 1.84460 1.16882 1.37819 1.67854 0.90013 0.86324 0.85825 0.74988 0.88473 0.84661 0.97709 0.89099 0.94300 0.94437 0.92537 0.97589 0.88782 0.89031 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.44 71.24 0.74 0.22 16 2 C -0.01 -0.23 7.40 25.00 0.18 -0.04 16 3 C -0.05 -0.95 11.80 83.75 0.99 0.04 16 4 N -0.43 -11.35 7.71 -305.18 -2.35 -13.70 16 5 C 0.11 3.35 7.81 87.21 0.68 4.03 16 6 C 0.61 22.03 7.69 86.67 0.67 22.70 16 7 O -0.56 -23.44 16.56 0.83 0.01 -23.42 16 8 N -0.58 -19.57 3.00 -820.89 -2.47 -22.04 16 9 C 0.10 2.97 6.23 86.51 0.54 3.51 16 10 C 0.05 1.93 5.19 86.54 0.45 2.38 16 11 N -0.52 -20.90 4.83 -898.86 -4.34 -25.24 16 12 C 0.16 7.32 4.19 85.56 0.36 7.67 16 13 C -0.55 -31.39 8.31 25.60 0.21 -31.18 16 14 H 0.03 1.66 6.11 -2.91 -0.02 1.64 16 15 C 0.01 0.49 5.47 84.66 0.46 0.96 16 16 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 17 Si 0.95 43.20 27.55 68.60 1.89 45.09 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.24 -9.87 6.43 99.48 0.64 -9.23 16 21 C 0.05 1.99 5.22 86.38 0.45 2.44 16 22 C 0.13 4.03 6.61 86.35 0.57 4.61 16 23 O -0.19 -5.42 10.79 -0.07 0.00 -5.42 16 24 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.23 2.10 8.06 -2.91 -0.02 2.08 16 28 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 29 H 0.14 4.07 4.32 -11.54 -0.05 4.02 16 30 H 0.00 0.21 6.71 -2.39 -0.02 0.20 16 31 H 0.09 3.23 8.10 -2.39 -0.02 3.22 16 32 H 0.04 1.75 6.88 -2.39 -0.02 1.74 16 33 H 0.04 1.66 7.75 -2.39 -0.02 1.65 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.01 0.27 7.00 -2.38 -0.02 0.26 16 36 H 0.09 3.37 8.07 -2.39 -0.02 3.35 16 37 H 0.09 2.98 7.04 -2.39 -0.02 2.96 16 38 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 Total: -1.00 -76.91 310.47 0.33 -76.59 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.97 Total: 10.36 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 6.31 Total: 17.32 kcal Atomic # 7 Polarization: -111.66 SS G_CDS: -8.86 Total: -120.52 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: 0.01 Total: -28.84 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.89 Total: 45.09 kcal Total: -76.91 0.33 -76.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601256819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.726 kcal (2) G-P(sol) polarization free energy of solvation -76.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds