Wall clock time and date at job start Tue Mar 31 2020 02:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35309 * 128.04301 * 2 1 4 4 O 1.34012 * 106.67090 * 180.24650 * 3 2 1 5 5 N 1.20904 * 111.84398 * 359.76367 * 4 3 2 6 6 C 1.30984 * 111.44375 * 0.02562 * 5 4 3 7 7 C 1.48326 * 126.93969 * 179.97438 * 6 5 4 8 8 O 1.21499 * 119.99580 * 174.44406 * 7 6 5 9 9 N 1.34771 * 120.00242 * 354.44275 * 7 6 5 10 10 C 1.47079 * 120.88178 * 184.32822 * 9 7 6 11 11 C 1.53700 * 108.27650 * 128.75428 * 10 9 7 12 12 N 1.46900 * 109.25730 * 54.08453 * 11 10 9 13 13 C 1.46897 * 111.00023 * 172.60853 * 12 11 10 14 14 C 1.50700 * 109.46929 * 294.29459 * 13 12 11 15 15 H 1.08001 * 120.00203 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99996 * 179.97438 * 14 13 12 17 17 N 1.31520 * 119.99801 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00237 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46865 * 90.00405 * 18 16 14 20 20 H 1.48490 * 109.47488 * 210.00395 * 18 16 14 21 21 H 1.48497 * 109.47043 * 330.01068 * 18 16 14 22 22 C 1.46904 * 111.26562 * 296.75576 * 12 11 10 23 23 C 1.47077 * 120.87877 * 4.60225 * 9 7 6 24 24 H 1.09005 * 109.47083 * 270.12795 * 1 2 3 25 25 H 1.09002 * 109.46913 * 30.12115 * 1 2 3 26 26 H 1.09000 * 109.47678 * 150.12716 * 1 2 3 27 27 H 1.08001 * 126.66208 * 0.02562 * 3 2 1 28 28 H 1.09001 * 109.62604 * 248.52350 * 10 9 7 29 29 H 1.09000 * 109.62823 * 9.10116 * 10 9 7 30 30 H 1.08990 * 109.64848 * 294.07514 * 11 10 9 31 31 H 1.09002 * 109.42019 * 173.94417 * 11 10 9 32 32 H 1.08997 * 109.47443 * 54.30003 * 13 12 11 33 33 H 1.08998 * 109.46830 * 174.29887 * 13 12 11 34 34 H 0.97004 * 119.99873 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.49036 * 303.14338 * 22 12 11 36 36 H 1.08999 * 109.51576 * 183.08004 * 22 12 11 37 37 H 1.09002 * 109.63302 * 350.90312 * 23 9 7 38 38 H 1.09005 * 109.62876 * 111.48181 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.0656 0.0000 4 8 3.5888 0.5773 -0.0055 5 7 3.5988 -0.6317 -0.0041 6 6 2.3836 -1.1206 0.0018 7 6 1.9991 -2.5532 0.0047 8 8 0.8306 -2.8683 0.1122 9 7 2.9458 -3.5053 -0.1119 10 6 2.5795 -4.9266 -0.2063 11 6 3.2925 -5.5280 -1.4279 12 7 4.7340 -5.2642 -1.3260 13 6 5.4743 -5.9705 -2.3801 14 6 5.3585 -7.4575 -2.1650 15 1 4.7914 -7.8397 -1.3291 16 6 5.9758 -8.3302 -3.0359 17 7 6.6660 -7.8647 -4.0541 18 14 5.8317 -10.1735 -2.7698 19 1 4.6400 -10.6863 -3.4925 20 1 7.0510 -10.8451 -3.2867 21 1 5.6893 -10.4544 -1.3186 22 6 5.0157 -3.8228 -1.3603 23 6 4.3730 -3.1510 -0.1422 24 1 -0.3633 0.0023 1.0277 25 1 -0.3633 0.8889 -0.5157 26 1 -0.3634 -0.8911 -0.5118 27 1 2.0560 2.1074 0.0004 28 1 2.8946 -5.4467 0.6983 29 1 1.5003 -5.0192 -0.3282 30 1 2.9033 -5.0746 -2.3394 31 1 3.1207 -6.6041 -1.4544 32 1 5.0577 -5.7105 -3.3532 33 1 6.5239 -5.6789 -2.3446 34 1 7.1005 -8.4787 -4.6666 35 1 4.6024 -3.3931 -2.2729 36 1 6.0935 -3.6617 -1.3381 37 1 4.4802 -2.0691 -0.2216 38 1 4.8573 -3.5038 0.7684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602207782.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:05 Heat of formation + Delta-G solvation = 51.209034 kcal Electronic energy + Delta-G solvation = -21932.883768 eV Core-core repulsion = 18586.634194 eV Total energy + Delta-G solvation = -3346.249573 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.29446 -39.94680 -37.58982 -34.89906 -34.60189 -32.78047 -32.26457 -30.64685 -28.64867 -28.15519 -25.84008 -24.54089 -23.16027 -22.05970 -21.78916 -20.78201 -19.28672 -17.98054 -17.63859 -16.91476 -16.35797 -15.85243 -15.13129 -14.79378 -14.61386 -14.32188 -13.83324 -13.73601 -13.67946 -13.48005 -13.42160 -12.93851 -12.77465 -12.14514 -11.95535 -11.54673 -11.26706 -10.93489 -10.84954 -10.76121 -10.57439 -10.50694 -10.46266 -10.06853 -9.82254 -9.68702 -9.26441 -8.56525 -8.45595 -7.33559 -6.06218 -4.08195 0.95864 1.46577 2.73280 2.98079 3.10859 3.30142 3.36565 3.40733 3.75312 4.29910 4.39782 4.55801 4.77373 4.87028 5.03228 5.29207 5.33127 5.38554 5.40843 5.45319 5.57387 5.61467 5.68358 5.80797 5.90576 6.01890 6.18919 6.24454 6.39825 6.49729 6.66653 7.21648 7.26890 7.38170 7.74221 7.80014 8.00769 8.08096 8.11893 8.47295 8.98981 9.56388 11.04627 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036770 B = 0.003769 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.316282 B = 7427.858152 C = 7918.981795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.153 4.153 3 C -0.065 4.065 4 O 0.114 5.886 5 N -0.325 5.325 6 C -0.018 4.018 7 C 0.592 3.408 8 O -0.532 6.532 9 N -0.589 5.589 10 C 0.115 3.885 11 C 0.051 3.949 12 N -0.536 5.536 13 C 0.193 3.807 14 C -0.510 4.510 15 H 0.064 0.936 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.899 3.101 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.272 1.272 22 C 0.044 3.956 23 C 0.083 3.917 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.222 0.778 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.025 0.975 31 H 0.099 0.901 32 H -0.009 1.009 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.024 0.976 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.260 18.258 8.125 22.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C -0.146 4.146 4 O 0.043 5.957 5 N -0.029 5.029 6 C -0.176 4.176 7 C 0.377 3.623 8 O -0.408 6.408 9 N -0.321 5.321 10 C -0.006 4.006 11 C -0.078 4.078 12 N -0.261 5.261 13 C 0.068 3.932 14 C -0.548 4.548 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.726 3.274 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.086 4.086 23 C -0.040 4.040 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.239 0.761 28 H 0.096 0.904 29 H 0.108 0.892 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.009 0.991 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.101 0.899 37 H 0.138 0.862 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.401 17.228 8.466 20.953 hybrid contribution -0.827 -0.505 -0.831 1.276 sum -9.228 16.723 7.635 20.570 Atomic orbital electron populations 1.20200 0.86583 1.03762 1.03185 1.21362 0.99126 0.90104 1.05163 1.25755 0.82472 1.01197 1.05187 1.84806 1.29559 1.15750 1.65541 1.73948 1.21110 0.91255 1.16599 1.23551 0.89403 0.97194 1.07497 1.16978 0.85332 0.82317 0.77637 1.90746 1.17613 1.81425 1.51026 1.48130 1.07142 1.07133 1.69718 1.22075 1.00439 0.78236 0.99893 1.22428 0.88907 1.02031 0.94397 1.62105 1.06658 1.06085 1.51272 1.19732 0.93191 0.93580 0.86649 1.21141 1.32204 0.90352 1.11132 0.91774 1.24996 0.95254 0.99223 0.95095 1.69962 1.33769 1.34923 1.15086 0.86487 0.77458 0.84922 0.78506 1.20714 1.21241 1.19711 1.22366 1.00492 0.90339 0.95393 1.22750 0.78853 1.02640 0.99713 0.90533 0.91076 0.89557 0.76137 0.90424 0.89183 0.95688 0.88244 0.99117 0.94977 0.92872 0.95732 0.89925 0.86236 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.97 36.01 0.36 -0.34 16 2 C -0.15 -1.61 6.34 -104.12 -0.66 -2.27 16 3 C -0.07 -0.49 12.24 29.69 0.36 -0.13 16 4 O 0.11 1.17 11.18 17.26 0.19 1.36 16 5 N -0.32 -4.23 8.52 33.29 0.28 -3.95 16 6 C -0.02 -0.24 6.95 -82.53 -0.57 -0.82 16 7 C 0.59 9.70 7.73 -12.11 -0.09 9.60 16 8 O -0.53 -9.49 14.89 5.37 0.08 -9.41 16 9 N -0.59 -9.81 3.00 -173.11 -0.52 -10.33 16 10 C 0.12 1.95 6.61 -3.36 -0.02 1.93 16 11 C 0.05 1.01 5.47 -3.46 -0.02 0.99 16 12 N -0.54 -11.54 4.62 -235.47 -1.09 -12.63 16 13 C 0.19 5.02 4.72 -4.98 -0.02 4.99 16 14 C -0.51 -14.14 8.41 -34.44 -0.29 -14.43 16 15 H 0.06 1.75 7.13 -52.49 -0.37 1.37 16 16 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 17 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 18 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 C 0.04 0.80 5.62 -3.70 -0.02 0.78 16 23 C 0.08 1.33 6.48 -3.60 -0.02 1.30 16 24 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.09 0.95 7.01 -51.93 -0.36 0.59 16 27 H 0.22 0.55 8.06 -52.49 -0.42 0.12 16 28 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.09 1.47 7.09 -51.93 -0.37 1.10 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.10 2.05 6.67 -51.93 -0.35 1.70 16 32 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 33 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 1.46 7.99 -51.93 -0.41 1.05 16 37 H 0.12 1.78 3.85 -70.43 -0.27 1.51 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -32.24 313.42 -6.78 -39.03 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -5.07 Total: -2.49 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.10 Total: 3.08 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -0.59 Total: -52.76 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.27 Total: -8.05 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.24 -6.78 -39.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602207782.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.236 kcal (2) G-P(sol) polarization free energy of solvation -32.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds