Wall clock time and date at job start Tue Mar 31 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35311 * 126.66739 * 2 1 4 4 C 1.42280 * 103.92089 * 179.97438 * 3 2 1 5 5 C 1.48330 * 126.93894 * 179.97438 * 4 3 2 6 6 O 1.21497 * 119.99474 * 5.79240 * 5 4 3 7 7 N 1.34772 * 119.99948 * 185.79243 * 5 4 3 8 8 C 1.47085 * 120.87960 * 185.89586 * 7 5 4 9 9 C 1.53245 * 108.51943 * 128.83906 * 8 7 5 10 10 N 1.46893 * 109.33830 * 53.82722 * 9 8 7 11 11 C 1.46899 * 110.99811 * 172.74610 * 10 9 8 12 12 C 1.50698 * 109.47028 * 64.99421 * 11 10 9 13 13 H 1.08001 * 120.00108 * 354.99070 * 12 11 10 14 14 C 1.37881 * 120.00004 * 174.98826 * 12 11 10 15 15 N 1.31513 * 119.99912 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00108 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47291 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47295 * 120.00327 * 16 14 12 19 19 H 1.48498 * 109.47188 * 240.00263 * 16 14 12 20 20 C 1.46893 * 111.27500 * 296.90033 * 10 9 8 21 21 C 1.47077 * 120.88337 * 5.92074 * 7 5 4 22 22 N 1.30978 * 106.12133 * 0.26482 * 4 3 2 23 23 O 1.20907 * 111.44360 * 359.53087 * 22 4 3 24 24 H 1.09007 * 109.47478 * 89.99937 * 1 2 3 25 25 H 1.08997 * 109.47551 * 209.99946 * 1 2 3 26 26 H 1.09000 * 109.47325 * 329.99861 * 1 2 3 27 27 H 1.07997 * 128.04097 * 359.97438 * 3 2 1 28 28 H 1.09000 * 109.62704 * 9.12844 * 8 7 5 29 29 H 1.08994 * 109.62943 * 248.54882 * 8 7 5 30 30 H 1.08992 * 109.48977 * 173.79384 * 9 8 7 31 31 H 1.08998 * 109.48885 * 293.87037 * 9 8 7 32 32 H 1.09002 * 109.47125 * 184.99700 * 11 10 9 33 33 H 1.09004 * 109.47364 * 304.99385 * 11 10 9 34 34 H 0.97003 * 119.99979 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.49900 * 183.06838 * 20 10 9 36 36 H 1.09003 * 109.49099 * 303.14210 * 20 10 9 37 37 H 1.09005 * 109.62613 * 111.44985 * 21 7 5 38 38 H 1.09003 * 109.62745 * 350.87394 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5352 0.0006 5 6 4.9076 1.2839 0.0003 6 8 4.9035 2.4943 0.1057 7 7 6.0755 0.6215 -0.1168 8 6 7.3597 1.3274 0.0094 9 6 8.2283 0.5796 1.0265 10 7 8.3314 -0.8320 0.6334 11 6 9.2932 -1.5463 1.4835 12 6 8.7813 -1.5821 2.9005 13 1 7.8774 -1.0519 3.1617 14 6 9.4669 -2.2918 3.8634 15 7 10.5679 -2.9371 3.5455 16 14 8.8321 -2.3368 5.6196 17 1 7.5856 -1.5355 5.7161 18 1 8.5492 -3.7418 6.0080 19 1 9.8572 -1.7681 6.5312 20 6 7.0179 -1.4893 0.6574 21 6 6.0996 -0.8263 -0.3747 22 7 3.4760 -0.7658 -0.0049 23 8 2.3072 -1.0751 0.0006 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 2.0302 2.1271 -0.0004 28 1 7.1850 2.3461 0.3558 29 1 7.8629 1.3476 -0.9572 30 1 9.2233 1.0239 1.0513 31 1 7.7734 0.6497 2.0145 32 1 9.4165 -2.5650 1.1159 33 1 10.2537 -1.0318 1.4571 34 1 11.0504 -3.4361 4.2230 35 1 7.1351 -2.5454 0.4148 36 1 6.5799 -1.3904 1.6506 37 1 6.4818 -1.0130 -1.3783 38 1 5.0920 -1.2315 -0.2822 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210480.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:41 Heat of formation + Delta-G solvation = 50.028413 kcal Electronic energy + Delta-G solvation = -22037.766244 eV Core-core repulsion = 18691.465475 eV Total energy + Delta-G solvation = -3346.300769 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.20906 -39.88207 -37.55017 -34.64407 -34.28972 -33.49446 -32.28646 -30.65873 -28.30339 -28.12313 -25.76577 -24.51330 -23.05175 -22.87250 -21.93512 -20.31875 -18.78002 -17.95791 -17.52063 -16.90004 -16.31064 -15.82094 -15.00926 -14.83352 -14.41003 -14.30779 -13.96906 -13.84957 -13.61879 -13.57402 -13.44520 -12.95095 -12.72333 -12.23509 -11.85497 -11.55160 -11.17036 -11.02977 -10.85362 -10.62883 -10.58372 -10.55794 -10.27963 -10.04091 -9.84043 -9.65280 -9.58769 -8.50742 -8.47382 -7.27107 -6.07284 -4.16533 1.01084 1.52870 2.70191 2.97462 3.17723 3.23792 3.32129 3.36217 3.85432 4.26446 4.37503 4.72509 4.80772 4.94156 5.01982 5.03727 5.23264 5.27023 5.42630 5.47428 5.53118 5.65606 5.73720 5.81776 5.89158 6.01523 6.22915 6.44996 6.61191 6.68538 6.72457 7.19279 7.42819 7.47125 7.84652 7.87968 7.95720 8.14567 8.18084 8.23333 8.93360 9.50864 10.97890 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.004668 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.303363 B = 5996.935168 C = 6675.928573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.034 4.034 3 C -0.186 4.186 4 C -0.014 4.014 5 C 0.593 3.407 6 O -0.535 6.535 7 N -0.588 5.588 8 C 0.116 3.884 9 C 0.049 3.951 10 N -0.542 5.542 11 C 0.187 3.813 12 C -0.551 4.551 13 H 0.056 0.944 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.888 3.112 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.055 3.945 21 C 0.080 3.920 22 N -0.323 5.323 23 O 0.112 5.888 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.179 0.821 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.029 0.971 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.265 5.391 -8.851 21.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.097 4.097 3 C -0.209 4.209 4 C -0.173 4.173 5 C 0.378 3.622 6 O -0.412 6.412 7 N -0.320 5.320 8 C -0.006 4.006 9 C -0.080 4.080 10 N -0.266 5.266 11 C 0.062 3.938 12 C -0.590 4.590 13 H 0.074 0.926 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.716 3.284 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.074 4.074 21 C -0.043 4.043 22 N -0.028 5.028 23 O 0.041 5.959 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.197 0.803 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.026 4.905 -9.213 19.971 hybrid contribution -0.709 0.542 1.994 2.184 sum -17.735 5.447 -7.219 19.908 Atomic orbital electron populations 1.20365 0.83529 1.04907 1.04259 1.24478 0.96476 0.85570 1.03165 1.22408 0.89711 1.01467 1.07269 1.23566 0.96802 0.90025 1.06877 1.16987 0.81566 0.86118 0.77496 1.90756 1.86419 1.12693 1.51296 1.48071 1.05344 1.10258 1.68292 1.21950 0.81846 0.96290 1.00508 1.22263 0.99163 0.90610 0.96008 1.62504 1.08419 1.01398 1.54276 1.19774 0.90470 0.94184 0.89370 1.21767 1.10265 1.31730 0.95241 0.92632 1.24946 0.94778 0.95069 0.98852 1.69947 1.16540 1.32338 1.33965 0.86598 0.78935 0.77847 0.85022 1.19950 1.20841 1.20852 1.22164 0.89956 0.98220 0.97062 1.22826 1.03327 0.78338 0.99804 1.73972 0.96460 1.15406 1.16919 1.84823 1.11457 1.33721 1.65855 0.89229 0.89565 0.88853 0.80325 0.89332 0.90823 0.90065 0.94009 0.94513 0.95244 0.92799 0.90191 0.93892 0.91168 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.44 36.00 0.38 0.05 16 2 C -0.03 -0.31 7.47 -35.35 -0.26 -0.58 16 3 C -0.19 -2.13 10.93 -39.07 -0.43 -2.56 16 4 C -0.01 -0.21 6.94 -82.53 -0.57 -0.78 16 5 C 0.59 10.33 7.72 -12.11 -0.09 10.23 16 6 O -0.54 -10.25 16.44 5.37 0.09 -10.16 16 7 N -0.59 -10.21 3.01 -173.39 -0.52 -10.73 16 8 C 0.12 1.97 6.58 -3.60 -0.02 1.94 16 9 C 0.05 0.96 5.24 -3.70 -0.02 0.94 16 10 N -0.54 -11.60 4.83 -235.78 -1.14 -12.74 16 11 C 0.19 4.79 5.11 -4.98 -0.03 4.76 16 12 C -0.55 -15.18 7.75 -34.44 -0.27 -15.45 16 13 H 0.06 1.55 5.88 -52.49 -0.31 1.25 16 14 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 15 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 16 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 C 0.06 1.10 5.15 -3.71 -0.02 1.08 16 21 C 0.08 1.34 6.51 -3.61 -0.02 1.31 16 22 N -0.32 -4.67 8.57 33.29 0.29 -4.39 16 23 O 0.11 1.34 11.18 17.23 0.19 1.53 16 24 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.18 1.70 8.06 -52.49 -0.42 1.28 16 28 H 0.09 1.47 7.11 -51.93 -0.37 1.10 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.08 1.54 8.05 -51.93 -0.42 1.12 16 31 H 0.04 0.92 6.92 -51.93 -0.36 0.56 16 32 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.08 1.57 8.11 -51.93 -0.42 1.15 16 36 H 0.04 0.96 6.79 -51.93 -0.35 0.61 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.12 1.90 3.84 -69.36 -0.27 1.64 16 LS Contribution 313.46 15.07 4.72 4.72 Total: -1.00 -32.14 313.46 -7.12 -39.26 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.01 Total: -1.53 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.46 Total: 2.73 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.64 Total: -53.18 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.28 Total: -8.63 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.14 -7.12 -39.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210480.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.292 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds