Wall clock time and date at job start Tue Mar 31 2020 01:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.41269 * 126.70583 * 2 1 4 4 C 1.36826 * 103.84595 * 180.12876 * 3 2 1 5 5 C 1.47513 * 126.94370 * 179.90572 * 4 3 2 6 6 O 1.21587 * 119.99922 * 6.75277 * 5 4 3 7 7 N 1.34769 * 120.00111 * 186.74239 * 5 4 3 8 8 C 1.47081 * 120.88329 * 186.09482 * 7 5 4 9 9 C 1.53240 * 108.52201 * 128.84066 * 8 7 5 10 10 N 1.46898 * 109.34169 * 53.82756 * 9 8 7 11 11 C 1.46901 * 111.00312 * 172.74545 * 10 9 8 12 12 C 1.50694 * 109.46718 * 64.98326 * 11 10 9 13 13 H 1.07996 * 120.00609 * 354.98420 * 12 11 10 14 14 C 1.37877 * 120.00000 * 174.97866 * 12 11 10 15 15 N 1.31513 * 119.99784 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00286 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47249 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.47230 * 120.00172 * 16 14 12 19 19 H 1.48500 * 109.47255 * 240.00237 * 16 14 12 20 20 C 1.46898 * 111.27090 * 296.90008 * 10 9 8 21 21 C 1.47084 * 120.88307 * 6.12052 * 7 5 4 22 22 O 1.34639 * 106.11169 * 359.64366 * 4 3 2 23 23 N 1.20887 * 111.47023 * 0.23996 * 22 4 3 24 24 H 1.09001 * 109.46838 * 270.30982 * 1 2 3 25 25 H 1.09006 * 109.47106 * 30.30457 * 1 2 3 26 26 H 1.08991 * 109.47297 * 150.30286 * 1 2 3 27 27 H 1.08000 * 128.07748 * 0.02562 * 3 2 1 28 28 H 1.08996 * 109.62885 * 9.13025 * 8 7 5 29 29 H 1.09005 * 109.62735 * 248.54939 * 8 7 5 30 30 H 1.08998 * 109.49098 * 173.79260 * 9 8 7 31 31 H 1.09004 * 109.48883 * 293.87227 * 9 8 7 32 32 H 1.08997 * 109.47454 * 184.98904 * 11 10 9 33 33 H 1.09001 * 109.46872 * 304.98806 * 11 10 9 34 34 H 0.97001 * 119.99821 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.49279 * 183.06398 * 20 10 9 36 36 H 1.08992 * 109.49159 * 303.14157 * 20 10 9 37 37 H 1.09001 * 109.62790 * 111.44548 * 21 7 5 38 38 H 1.09004 * 109.62623 * 350.86889 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1326 0.0000 4 6 3.6121 0.6010 -0.0030 5 6 4.8871 1.3430 -0.0062 6 8 4.8869 2.5526 0.1174 7 7 6.0522 0.6801 -0.1460 8 6 7.3392 1.3806 -0.0192 9 6 8.2154 0.6127 0.9762 10 7 8.3114 -0.7920 0.5571 11 6 9.2792 -1.5236 1.3853 12 6 8.7806 -1.5832 2.8061 13 1 7.8807 -1.0554 3.0853 14 6 9.4732 -2.3117 3.7498 15 7 10.5693 -2.9541 3.4101 16 14 8.8547 -2.3862 5.5109 17 1 7.6107 -1.5845 5.6330 18 1 8.5716 -3.7973 5.8768 19 1 9.8899 -1.8366 6.4228 20 6 6.9965 -1.4464 0.5817 21 6 6.0704 -0.7630 -0.4299 22 8 3.4540 -0.7360 0.0035 23 7 2.2848 -1.0432 0.0051 24 1 -0.3633 0.0056 1.0277 25 1 -0.3633 0.8873 -0.5186 26 1 -0.3633 -0.8926 -0.5091 27 1 2.0679 2.1747 0.0004 28 1 7.1704 2.3933 0.3469 29 1 7.8335 1.4169 -0.9901 30 1 9.2117 1.0542 0.9997 31 1 7.7699 0.6662 1.9695 32 1 9.3965 -2.5359 0.9986 33 1 10.2408 -1.0109 1.3590 34 1 11.0564 -3.4669 4.0739 35 1 7.1088 -2.4984 0.3192 36 1 6.5680 -1.3642 1.5805 37 1 6.4427 -0.9327 -1.4402 38 1 5.0626 -1.1675 -0.3352 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609144049.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:24 Heat of formation + Delta-G solvation = 26.828416 kcal Electronic energy + Delta-G solvation = -22091.536029 eV Core-core repulsion = 18744.229233 eV Total energy + Delta-G solvation = -3347.306796 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.10842 -41.25788 -39.14916 -36.39259 -35.75749 -34.39177 -33.33912 -31.97916 -30.00289 -29.64897 -27.41314 -25.49448 -24.59398 -24.06523 -23.43315 -21.75833 -20.50519 -18.98106 -18.87887 -18.25329 -17.68202 -17.21448 -16.74747 -16.38902 -16.01733 -15.59126 -15.35726 -15.16103 -14.82888 -14.45127 -14.28571 -14.19974 -13.71927 -13.60524 -13.52983 -13.00140 -12.94684 -12.57178 -12.49547 -12.39153 -12.20829 -12.00093 -11.81339 -11.70820 -11.37680 -11.13860 -10.87019 -10.62727 -9.92660 -9.08685 -8.18687 -6.37209 -0.35033 0.99669 1.32496 1.35143 1.36207 1.45231 1.77884 1.97659 2.34386 3.03924 3.07033 3.14857 3.30152 3.69761 3.88805 3.97884 4.06255 4.27267 4.30478 4.32669 4.50236 4.60918 4.70089 4.73508 4.76285 4.83322 4.93102 5.02697 5.14014 5.17512 5.20648 5.32016 5.33900 5.72056 5.94923 6.05815 6.21264 6.42457 6.64670 6.82839 7.03654 7.34362 8.84035 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.004711 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.824415 B = 5942.023418 C = 6623.256507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.018 3.982 3 C -0.143 4.143 4 C -0.095 4.095 5 C 0.602 3.398 6 O -0.545 6.545 7 N -0.595 5.595 8 C 0.127 3.873 9 C 0.051 3.949 10 N -0.535 5.535 11 C 0.201 3.799 12 C -0.557 4.557 13 H 0.050 0.950 14 C 0.017 3.983 15 N -0.922 5.922 16 Si 0.951 3.049 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.054 3.946 21 C 0.109 3.891 22 O 0.100 5.900 23 N -0.372 5.372 24 H 0.095 0.905 25 H 0.110 0.890 26 H 0.083 0.917 27 H 0.205 0.795 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.016 0.984 32 H 0.014 0.986 33 H 0.010 0.990 34 H 0.266 0.734 35 H 0.082 0.918 36 H 0.019 0.981 37 H 0.100 0.900 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.514 7.333 -9.016 21.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.140 4.140 3 C -0.165 4.165 4 C -0.160 4.160 5 C 0.389 3.611 6 O -0.424 6.424 7 N -0.326 5.326 8 C 0.005 3.995 9 C -0.079 4.079 10 N -0.259 5.259 11 C 0.074 3.926 12 C -0.596 4.596 13 H 0.068 0.932 14 C -0.182 4.182 15 N -0.561 5.561 16 Si 0.777 3.223 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.202 1.202 20 C -0.076 4.076 21 C -0.014 4.014 22 O 0.034 5.966 23 N -0.080 5.080 24 H 0.113 0.887 25 H 0.128 0.872 26 H 0.102 0.898 27 H 0.222 0.778 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.035 0.965 32 H 0.033 0.967 33 H 0.028 0.972 34 H 0.075 0.925 35 H 0.100 0.900 36 H 0.037 0.963 37 H 0.118 0.882 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.382 6.545 -9.374 20.805 hybrid contribution 0.066 0.301 2.101 2.124 sum -17.316 6.846 -7.273 19.990 Atomic orbital electron populations 1.20429 0.82372 1.05576 1.04934 1.24294 1.00992 0.87379 1.01333 1.23236 0.89040 1.02854 1.01327 1.24174 0.97369 0.84280 1.10174 1.16807 0.81429 0.85796 0.77095 1.90814 1.86147 1.13038 1.52448 1.48204 1.05753 1.10785 1.67833 1.21892 0.81014 0.95806 1.00800 1.22296 1.00021 0.89782 0.95762 1.62444 1.08232 1.02099 1.53104 1.19441 0.90702 0.93035 0.89418 1.21971 1.10179 1.30836 0.96623 0.93200 1.25703 0.94954 0.94885 1.02708 1.70043 1.17656 1.32672 1.35745 0.85620 0.78302 0.77992 0.80434 1.19889 1.20218 1.20209 1.22220 0.89481 0.98807 0.97058 1.22434 1.01183 0.77677 1.00080 1.85058 1.21187 1.22163 1.68171 1.73738 0.89991 1.25846 1.18441 0.88666 0.87176 0.89777 0.77804 0.88531 0.88452 0.89659 0.96549 0.96740 0.97167 0.92519 0.89972 0.96266 0.88199 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.47 71.24 0.75 -0.08 16 2 C 0.02 0.37 7.31 43.56 0.32 0.69 16 3 C -0.14 -3.00 10.92 22.68 0.25 -2.75 16 4 C -0.09 -2.51 6.97 24.39 0.17 -2.34 16 5 C 0.60 18.14 7.69 86.69 0.67 18.81 16 6 O -0.55 -18.40 16.41 -3.99 -0.07 -18.47 16 7 N -0.59 -17.76 3.01 -821.72 -2.47 -20.23 16 8 C 0.13 3.73 6.58 86.35 0.57 4.29 16 9 C 0.05 1.86 5.24 86.38 0.45 2.31 16 10 N -0.54 -21.69 4.83 -899.86 -4.35 -26.04 16 11 C 0.20 10.14 5.11 85.55 0.44 10.58 16 12 C -0.56 -30.37 7.75 25.60 0.20 -30.17 16 13 H 0.05 2.75 5.88 -2.91 -0.02 2.73 16 14 C 0.02 0.97 5.46 84.65 0.46 1.43 16 15 N -0.92 -53.82 13.29 21.45 0.28 -53.54 16 16 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 17 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 20 C 0.05 1.97 5.15 86.38 0.44 2.42 16 21 C 0.11 3.10 6.52 86.35 0.56 3.66 16 22 O 0.10 2.74 7.83 65.85 0.52 3.25 16 23 N -0.37 -9.68 12.04 -48.86 -0.59 -10.27 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.11 0.64 8.14 -2.38 -0.02 0.63 16 26 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 28 H 0.10 2.77 7.11 -2.39 -0.02 2.75 16 29 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 30 H 0.09 3.04 8.05 -2.39 -0.02 3.03 16 31 H 0.02 0.68 6.92 -2.39 -0.02 0.67 16 32 H 0.01 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.01 0.55 8.07 -2.39 -0.02 0.53 16 34 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.08 3.01 8.11 -2.39 -0.02 2.99 16 36 H 0.02 0.81 6.79 -2.39 -0.02 0.79 16 37 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.11 2.91 3.92 -35.54 -0.14 2.77 16 Total: -1.00 -66.07 313.51 1.58 -64.50 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.95 Total: 5.98 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 5.28 Total: 8.84 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -7.12 Total: -110.08 kcal Atomic # 8 Polarization: -15.66 SS G_CDS: 0.45 Total: -15.21 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.07 1.58 -64.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609144049.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.326 kcal (2) G-P(sol) polarization free energy of solvation -66.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds