Wall clock time and date at job start Tue Mar 31 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.35851 * 126.45357 * 2 1 4 4 H 0.97001 * 124.91624 * 0.03559 * 3 2 1 5 5 N 1.28465 * 110.17689 * 179.74488 * 3 2 1 6 6 C 1.31982 * 110.20161 * 0.45455 * 5 3 2 7 7 C 1.47423 * 126.46926 * 179.82056 * 6 5 3 8 8 O 1.21627 * 120.00024 * 185.60275 * 7 6 5 9 9 N 1.34775 * 119.99904 * 5.59472 * 7 6 5 10 10 C 1.36923 * 119.99754 * 5.93979 * 9 7 6 11 11 H 1.08005 * 120.00009 * 236.86176 * 10 9 7 12 12 C 1.39004 * 120.00273 * 56.86715 * 10 9 7 13 13 N 1.31386 * 120.00172 * 9.10286 * 12 10 9 14 14 Si 1.86801 * 120.00042 * 189.10695 * 12 10 9 15 15 H 1.48498 * 109.47295 * 89.99962 * 14 12 10 16 16 H 1.48506 * 109.47083 * 209.99813 * 14 12 10 17 17 H 1.48505 * 109.47085 * 329.99541 * 14 12 10 18 18 C 1.46496 * 119.99890 * 185.93678 * 9 7 6 19 19 C 1.55241 * 110.58113 * 230.17206 * 18 9 7 20 20 C 1.54882 * 102.59048 * 203.33920 * 19 18 9 21 21 C 1.54268 * 104.31348 * 37.93153 * 20 19 18 22 22 C 1.53870 * 106.59735 * 336.32525 * 21 20 19 23 23 C 1.35763 * 126.45498 * 180.02562 * 2 1 3 24 24 O 1.36097 * 127.26524 * 359.97438 * 23 2 1 25 25 H 1.09002 * 109.47116 * 269.97957 * 1 2 3 26 26 H 1.08997 * 109.46842 * 29.97831 * 1 2 3 27 27 H 1.09003 * 109.47391 * 149.97761 * 1 2 3 28 28 H 0.97001 * 120.00154 * 180.02562 * 13 12 10 29 29 H 1.09001 * 110.43803 * 352.75832 * 18 9 7 30 30 H 1.09003 * 110.89533 * 85.04607 * 19 18 9 31 31 H 1.09000 * 110.76789 * 321.57715 * 19 18 9 32 32 H 1.09003 * 110.48713 * 279.19112 * 20 19 18 33 33 H 1.09001 * 110.48810 * 156.68069 * 20 19 18 34 34 H 1.09004 * 110.02864 * 95.60617 * 21 20 19 35 35 H 1.08998 * 110.03663 * 216.99144 * 21 20 19 36 36 H 1.09001 * 110.03681 * 119.28227 * 22 21 20 37 37 H 1.09000 * 110.03671 * 240.66338 * 22 21 20 38 38 H 0.96699 * 113.99425 * 269.99300 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0927 0.0000 4 1 2.0043 2.0119 0.0005 5 7 3.5473 0.7327 0.0054 6 6 3.6377 -0.5841 -0.0007 7 6 4.8805 -1.3771 -0.0011 8 8 4.8295 -2.5874 -0.1098 9 7 6.0731 -0.7609 0.1188 10 6 6.1266 0.5854 0.3628 11 1 6.6640 1.2355 -0.3117 12 6 5.4893 1.1154 1.4786 13 7 4.9899 0.3142 2.3924 14 14 5.3427 2.9669 1.6790 15 1 4.0837 3.4352 1.0458 16 1 5.3269 3.3087 3.1241 17 1 6.5010 3.6286 1.0265 18 6 7.3121 -1.5315 -0.0118 19 6 8.2625 -1.2431 1.1814 20 6 9.6520 -1.6064 0.6016 21 6 9.5951 -1.1170 -0.8603 22 6 8.1074 -1.0694 -1.2502 23 6 2.3137 -1.0920 -0.0005 24 8 1.9321 -2.3984 -0.0006 25 1 -0.3633 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8898 -0.5142 28 1 4.5449 0.6841 3.1709 29 1 7.0926 -2.5973 -0.0753 30 1 8.0210 -1.8790 2.0332 31 1 8.2236 -0.1903 1.4607 32 1 9.8103 -2.6842 0.6372 33 1 10.4404 -1.0878 1.1472 34 1 10.0336 -0.1221 -0.9382 35 1 10.1295 -1.8121 -1.5078 36 1 7.8238 -0.0514 -1.5175 37 1 7.9192 -1.7412 -2.0877 38 1 1.8223 -2.7760 0.8828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610989445.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:13 Heat of formation + Delta-G solvation = 0.781134 kcal Electronic energy + Delta-G solvation = -23097.528168 eV Core-core repulsion = 19749.091877 eV Total energy + Delta-G solvation = -3348.436291 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.65332 -38.57485 -36.60544 -36.22720 -33.99725 -31.82062 -31.21126 -30.03963 -27.90880 -27.02183 -26.05702 -24.74216 -22.79439 -20.48493 -19.75012 -19.35511 -19.26449 -17.30482 -16.41978 -16.26450 -15.65614 -15.05509 -14.85731 -14.52827 -14.25643 -13.50748 -13.42763 -13.14771 -13.07645 -12.59594 -12.56337 -12.39564 -12.18157 -11.51770 -11.30085 -11.15224 -10.92536 -10.56965 -10.53684 -10.41427 -10.31082 -10.26687 -9.85260 -9.54406 -9.31644 -8.79213 -8.48845 -8.08460 -7.84749 -7.06182 -6.19611 -4.02482 2.57346 2.87174 3.21847 3.26460 3.30825 3.59885 4.22966 4.67703 4.90656 5.15752 5.21434 5.27891 5.37498 5.40603 5.48368 5.60830 5.70164 5.90478 6.10415 6.15083 6.25534 6.31084 6.35922 6.36661 6.46615 6.55935 6.58083 6.64393 6.76921 6.99036 7.11324 7.18086 7.36994 7.60984 7.79691 8.13366 8.40002 8.76291 8.90616 9.18822 9.74756 10.14473 10.87365 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.018362 B = 0.007934 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.526328 B = 3528.144535 C = 4559.939727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.044 4.044 3 N -0.402 5.402 4 H 0.435 0.565 5 N -0.187 5.187 6 C 0.035 3.965 7 C 0.591 3.409 8 O -0.595 6.595 9 N -0.435 5.435 10 C -0.326 4.326 11 H 0.075 0.925 12 C 0.087 3.913 13 N -0.866 5.866 14 Si 0.919 3.081 15 H -0.280 1.280 16 H -0.293 1.293 17 H -0.273 1.273 18 C 0.137 3.863 19 C -0.115 4.115 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.131 4.131 23 C 0.028 3.972 24 O -0.459 6.459 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.263 0.737 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.052 0.948 38 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.851 2.216 -2.120 4.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.169 4.169 3 N -0.118 5.118 4 H 0.278 0.722 5 N -0.021 5.021 6 C -0.128 4.128 7 C 0.379 3.621 8 O -0.478 6.478 9 N -0.154 5.154 10 C -0.455 4.455 11 H 0.093 0.907 12 C -0.121 4.121 13 N -0.501 5.501 14 Si 0.747 3.253 15 H -0.206 1.206 16 H -0.220 1.220 17 H -0.198 1.198 18 C 0.032 3.968 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.170 4.170 23 C -0.027 4.027 24 O -0.263 6.263 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.274 2.546 -2.625 4.306 hybrid contribution -0.858 0.856 0.960 1.546 sum -3.132 3.402 -1.665 4.915 Atomic orbital electron populations 1.20140 0.87639 1.02977 1.02226 1.21246 0.94442 0.88513 1.12686 1.43611 1.04335 1.08143 1.55685 0.72238 1.74532 0.97449 1.14833 1.15287 1.22138 0.94283 0.89431 1.06903 1.17121 0.82352 0.85424 0.77203 1.90613 1.87076 1.14012 1.56115 1.42992 1.01755 1.07907 1.62770 1.18840 1.37236 0.81395 1.08028 0.90696 1.25345 0.94424 0.98686 0.93691 1.69900 1.35799 1.35003 1.09404 0.86155 0.78616 0.84217 0.76355 1.20573 1.21963 1.19825 1.21844 0.85594 0.96046 0.93268 1.22666 0.92345 1.03027 0.97269 1.22316 0.98132 0.99933 0.95861 1.22023 0.96730 1.00291 0.96357 1.22431 0.94219 1.02110 0.98231 1.17923 0.90049 0.84171 1.10606 1.84812 1.89075 1.20269 1.32170 0.91400 0.91944 0.90191 0.92710 0.90171 0.92597 0.89674 0.92505 0.92506 0.92398 0.92901 0.90973 0.92952 0.77080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 10.44 36.00 0.38 -0.52 16 2 C -0.04 -0.79 7.27 -81.70 -0.59 -1.38 16 3 N -0.40 -7.51 6.87 33.71 0.23 -7.28 16 4 H 0.43 6.44 8.96 -190.44 -1.71 4.74 16 5 N -0.19 -4.33 7.36 33.44 0.25 -4.09 16 6 C 0.04 0.89 5.83 -82.70 -0.48 0.41 16 7 C 0.59 16.23 6.96 -12.52 -0.09 16.14 16 8 O -0.60 -17.32 15.93 3.46 0.06 -17.27 16 9 N -0.44 -11.22 2.42 -106.98 -0.26 -11.48 16 10 C -0.33 -8.33 6.09 -14.99 -0.09 -8.43 16 11 H 0.08 1.91 7.10 -52.48 -0.37 1.53 16 12 C 0.09 2.19 3.02 -17.46 -0.05 2.14 16 13 N -0.87 -23.36 12.00 55.50 0.67 -22.69 16 14 Si 0.92 20.21 28.76 -169.99 -4.89 15.32 16 15 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 C 0.14 3.10 3.25 -66.08 -0.21 2.89 16 19 C -0.11 -2.38 6.39 -24.55 -0.16 -2.53 16 20 C -0.12 -2.05 6.82 -25.07 -0.17 -2.22 16 21 C -0.12 -1.87 6.80 -25.61 -0.17 -2.04 16 22 C -0.13 -2.54 6.43 -25.62 -0.16 -2.70 16 23 C 0.03 0.63 7.28 -39.10 -0.28 0.34 16 24 O -0.46 -9.50 13.21 -21.84 -0.29 -9.78 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.08 1.93 7.00 -51.93 -0.36 1.56 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 31 H 0.08 1.92 7.02 -51.93 -0.36 1.55 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.47 6.84 -51.93 -0.36 1.12 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.38 6.34 9.07 45.56 0.41 6.75 16 LS Contribution 312.03 15.07 4.70 4.70 Total: -1.00 -32.41 312.03 -7.32 -39.73 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -5.69 Total: 10.73 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -2.10 Total: 2.09 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.88 Total: -45.54 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.23 Total: -27.05 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.89 Total: 15.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.41 -7.32 -39.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610989445.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.515 kcal (2) G-P(sol) polarization free energy of solvation -32.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds