Wall clock time and date at job start Tue Mar 31 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.35844 * 126.45927 * 2 1 4 4 H 0.96998 * 124.91450 * 359.97438 * 3 2 1 5 5 N 1.28461 * 110.16715 * 179.97438 * 3 2 1 6 6 C 1.31938 * 110.20709 * 359.73736 * 5 3 2 7 7 C 1.47525 * 126.45423 * 180.27130 * 6 5 3 8 8 O 1.21597 * 119.99705 * 186.51727 * 7 6 5 9 9 N 1.34775 * 120.00435 * 6.52062 * 7 6 5 10 10 C 1.46928 * 120.62806 * 6.73874 * 9 7 6 11 11 C 1.53626 * 108.54315 * 126.36705 * 10 9 7 12 12 C 1.53041 * 109.24008 * 54.85615 * 11 10 9 13 13 C 1.50695 * 109.44653 * 178.49744 * 12 11 10 14 14 H 1.08003 * 120.00387 * 120.06079 * 13 12 11 15 15 C 1.37878 * 120.00259 * 300.05924 * 13 12 11 16 16 N 1.31520 * 119.99784 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00407 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46964 * 59.99771 * 17 15 13 19 19 H 1.48498 * 109.47231 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47033 * 299.99976 * 17 15 13 21 21 C 1.53039 * 109.53637 * 298.50773 * 12 11 10 22 22 C 1.46922 * 120.63014 * 187.01566 * 9 7 6 23 23 C 1.35783 * 126.46148 * 179.97438 * 2 1 3 24 24 O 1.36080 * 127.26700 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47284 * 270.02410 * 1 2 3 26 26 H 1.09007 * 109.47214 * 30.02210 * 1 2 3 27 27 H 1.08997 * 109.47081 * 150.02575 * 1 2 3 28 28 H 1.09001 * 109.58192 * 246.20233 * 10 9 7 29 29 H 1.08995 * 109.58417 * 6.62322 * 10 9 7 30 30 H 1.08997 * 109.63544 * 294.86517 * 11 10 9 31 31 H 1.09003 * 109.42958 * 174.71806 * 11 10 9 32 32 H 1.09003 * 109.46269 * 58.52886 * 12 11 10 33 33 H 0.96999 * 120.00093 * 180.02562 * 16 15 13 34 34 H 1.09002 * 109.50254 * 301.41555 * 21 12 11 35 35 H 1.09002 * 109.52313 * 181.33524 * 21 12 11 36 36 H 1.08999 * 109.59068 * 353.37019 * 22 9 7 37 37 H 1.08996 * 109.59004 * 113.65851 * 22 9 7 38 38 H 0.96696 * 114.00004 * 90.02682 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3142 1.0926 0.0000 4 1 2.0044 2.0117 -0.0004 5 7 3.5473 0.7322 0.0005 6 6 3.6373 -0.5841 0.0066 7 6 4.8810 -1.3776 0.0148 8 8 4.8312 -2.5871 -0.0997 9 7 6.0724 -0.7619 0.1492 10 6 6.1431 0.6774 0.4355 11 6 7.0174 0.8853 1.6815 12 6 8.3783 0.2215 1.4591 13 6 9.2529 0.4542 2.6640 14 1 9.6336 -0.3862 3.2254 15 6 9.5671 1.7401 3.0498 16 7 9.1030 2.7636 2.3665 17 14 10.6518 2.0287 4.5430 18 1 11.9730 1.3861 4.3266 19 1 10.8387 3.4880 4.7444 20 1 10.0065 1.4412 5.7445 21 6 8.1862 -1.2825 1.2515 22 6 7.3251 -1.5162 0.0061 23 6 2.3139 -1.0920 0.0005 24 8 1.9326 -2.3983 0.0016 25 1 -0.3634 0.0004 1.0277 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5134 28 1 6.5840 1.1978 -0.4147 29 1 5.1406 1.0624 0.6223 30 1 6.5316 0.4378 2.5486 31 1 7.1569 1.9528 1.8525 32 1 8.8527 0.6521 0.5773 33 1 9.3244 3.6682 2.6377 34 1 7.6894 -1.7097 2.1226 35 1 9.1574 -1.7586 1.1167 36 1 7.1028 -2.5789 -0.0903 37 1 7.8593 -1.1728 -0.8797 38 1 1.8225 -2.7766 -0.8815 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611677850.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:08 Heat of formation + Delta-G solvation = 0.235026 kcal Electronic energy + Delta-G solvation = -22160.434249 eV Core-core repulsion = 18811.974277 eV Total energy + Delta-G solvation = -3348.459972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.73980 -39.26453 -37.29321 -36.51775 -33.54222 -32.79945 -31.40174 -30.66671 -29.86017 -27.03862 -26.31805 -24.21621 -22.42133 -21.99608 -21.34932 -19.72825 -18.52802 -18.05809 -17.12819 -16.55927 -16.00925 -15.91886 -15.35451 -14.54621 -14.43242 -14.22025 -13.89526 -13.38060 -13.23734 -13.08449 -12.78944 -12.68070 -12.58793 -12.22769 -11.89057 -11.41561 -10.94773 -10.85264 -10.63665 -10.31591 -10.25326 -10.02343 -9.65750 -9.44087 -9.29527 -9.09492 -8.85826 -8.67742 -8.30804 -7.87701 -5.97417 -4.03408 1.57258 1.85739 2.65179 3.33117 3.37210 3.40755 3.46375 3.66001 4.23295 4.45153 4.48110 4.60815 4.88461 5.19960 5.29224 5.32265 5.51893 5.59966 5.79460 5.95025 6.05575 6.08884 6.22961 6.32322 6.52280 6.58802 6.75216 6.88993 7.01850 7.14061 7.26665 7.41040 7.65209 7.72823 7.77270 7.99953 8.04023 8.12410 8.46989 8.62550 8.99728 9.61012 11.07884 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026599 B = 0.004465 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.425972 B = 6269.412817 C = 6926.679941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.014 4.014 3 N -0.380 5.380 4 H 0.448 0.552 5 N -0.233 5.233 6 C -0.017 4.017 7 C 0.593 3.407 8 O -0.544 6.544 9 N -0.585 5.585 10 C 0.084 3.916 11 C -0.121 4.121 12 C 0.047 3.953 13 C -0.511 4.511 14 H 0.054 0.946 15 C 0.061 3.939 16 N -0.892 5.892 17 Si 0.890 3.110 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.123 4.123 22 C 0.112 3.888 23 C 0.043 3.957 24 O -0.452 6.452 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.035 0.965 31 H 0.103 0.897 32 H 0.027 0.973 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.862 -1.788 -7.562 18.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 N -0.097 5.097 4 H 0.293 0.707 5 N -0.069 5.069 6 C -0.178 4.178 7 C 0.378 3.622 8 O -0.421 6.421 9 N -0.317 5.317 10 C -0.039 4.039 11 C -0.160 4.160 12 C 0.029 3.971 13 C -0.550 4.550 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.161 4.161 22 C -0.010 4.010 23 C -0.013 4.013 24 O -0.257 6.257 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.126 0.874 30 H 0.054 0.946 31 H 0.121 0.879 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -16.187 -1.292 -7.014 17.689 hybrid contribution 0.060 0.138 0.416 0.443 sum -16.128 -1.153 -6.598 17.463 Atomic orbital electron populations 1.20265 0.86197 1.03630 1.03459 1.21528 0.95260 0.87589 1.09648 1.43337 1.03238 1.09190 1.53919 0.70681 1.73770 1.00424 1.14086 1.18670 1.22531 0.95506 0.89875 1.09895 1.16904 0.81632 0.86130 0.77514 1.90747 1.86345 1.12914 1.52126 1.48102 1.04874 1.11171 1.67524 1.22790 1.03374 0.78170 0.99533 1.22074 0.95687 1.04930 0.93285 1.18656 0.92737 0.88631 0.97090 1.21192 1.29686 0.91986 1.12097 0.92784 1.24955 0.96034 0.96230 0.96728 1.69843 1.45160 0.98387 1.39717 0.86686 0.81147 0.76894 0.83429 1.20320 1.21353 1.20373 1.22005 0.97701 1.00932 0.95470 1.21743 0.83727 0.96349 0.99156 1.17758 0.89069 0.84987 1.09494 1.84898 1.88754 1.19314 1.32701 0.90244 0.91098 0.89686 0.92376 0.87441 0.94572 0.87926 0.95479 0.93023 0.92901 0.92120 0.90266 0.92032 0.76138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.44 36.00 0.38 -0.11 16 2 C -0.01 -0.15 7.27 -81.70 -0.59 -0.75 16 3 N -0.38 -4.06 6.87 33.71 0.23 -3.83 16 4 H 0.45 2.92 8.96 -190.45 -1.71 1.21 16 5 N -0.23 -3.50 8.69 33.45 0.29 -3.21 16 6 C -0.02 -0.29 6.83 -82.69 -0.57 -0.85 16 7 C 0.59 11.82 7.68 -12.48 -0.10 11.73 16 8 O -0.54 -11.83 15.97 3.56 0.06 -11.78 16 9 N -0.59 -11.72 2.97 -173.73 -0.52 -12.23 16 10 C 0.08 1.68 6.14 -3.48 -0.02 1.66 16 11 C -0.12 -2.86 5.17 -26.38 -0.14 -3.00 16 12 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 13 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 14 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -25.02 11.30 55.43 0.63 -24.39 16 17 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C -0.12 -2.66 5.30 -26.61 -0.14 -2.80 16 22 C 0.11 2.19 6.44 -3.71 -0.02 2.17 16 23 C 0.04 0.62 7.28 -39.12 -0.28 0.33 16 24 O -0.45 -6.18 13.21 -21.72 -0.29 -6.46 16 25 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.11 2.03 4.15 -73.52 -0.30 1.72 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 2.66 6.03 -51.93 -0.31 2.34 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.51 7.00 -51.93 -0.36 1.15 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.38 3.51 9.07 45.56 0.41 3.92 16 LS Contribution 312.88 15.07 4.72 4.72 Total: -1.00 -33.74 312.88 -7.59 -41.33 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -5.62 Total: 2.98 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: -2.07 Total: -3.39 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.63 Total: -43.66 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.23 Total: -18.24 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.74 -7.59 -41.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611677850.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.564 kcal (2) G-P(sol) polarization free energy of solvation -33.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds