Wall clock time and date at job start Tue Mar 31 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29932 * 125.38048 * 2 1 4 4 C 1.36065 * 108.48131 * 179.97438 * 3 2 1 5 5 C 1.47421 * 126.45356 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00306 * 180.02562 * 5 4 3 7 7 N 1.34781 * 119.99658 * 0.03071 * 5 4 3 8 8 C 1.46499 * 119.99981 * 179.97438 * 7 5 4 9 9 C 1.53081 * 109.45080 * 84.78441 * 8 7 5 10 10 C 1.53190 * 109.29209 * 181.24433 * 9 8 7 11 11 N 1.46921 * 108.89311 * 305.57883 * 10 9 8 12 12 C 1.36940 * 120.63187 * 233.51481 * 11 10 9 13 13 H 1.08001 * 120.00319 * 152.61971 * 12 11 10 14 14 C 1.38813 * 119.99903 * 332.62203 * 12 11 10 15 15 N 1.31624 * 120.00070 * 159.34992 * 14 12 11 16 16 Si 1.86800 * 120.00077 * 339.35529 * 14 12 11 17 17 H 1.48494 * 109.47321 * 92.87851 * 16 14 12 18 18 H 1.48501 * 109.47194 * 212.88430 * 16 14 12 19 19 H 1.48509 * 109.46983 * 332.87654 * 16 14 12 20 20 C 1.46923 * 118.74178 * 53.54201 * 11 10 9 21 21 C 1.53035 * 109.46006 * 204.99622 * 8 7 5 22 22 C 1.36097 * 107.09775 * 0.22831 * 4 3 2 23 23 O 1.34052 * 125.37628 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47036 * 89.99703 * 1 2 3 25 25 H 1.08993 * 109.47135 * 210.00138 * 1 2 3 26 26 H 1.09001 * 109.47100 * 330.00526 * 1 2 3 27 27 H 0.96997 * 119.99900 * 359.97438 * 7 5 4 28 28 H 1.08996 * 109.45705 * 324.97360 * 8 7 5 29 29 H 1.08992 * 109.38800 * 61.36852 * 9 8 7 30 30 H 1.09002 * 109.61927 * 301.26130 * 9 8 7 31 31 H 1.08999 * 109.58729 * 185.71870 * 10 9 8 32 32 H 1.09004 * 109.58886 * 65.43758 * 10 9 8 33 33 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.59094 * 66.17180 * 20 11 10 35 35 H 1.09001 * 109.59077 * 186.46452 * 20 11 10 36 36 H 1.09002 * 109.49848 * 58.66419 * 21 8 7 37 37 H 1.08999 * 109.49849 * 298.56228 * 21 8 7 38 38 H 1.08000 * 126.52356 * 179.77472 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0003 6 8 5.8605 1.0618 0.0004 7 7 4.5879 2.8825 -0.0001 8 6 5.7633 3.7570 0.0002 9 6 6.2511 3.9557 -1.4372 10 6 7.4983 4.8452 -1.4299 11 7 7.1893 6.0920 -0.7168 12 6 7.4177 7.3073 -1.3052 13 1 6.8252 8.1646 -1.0215 14 6 8.4109 7.4374 -2.2662 15 7 8.3801 8.4454 -3.1122 16 14 9.7909 6.1820 -2.3591 17 1 9.4260 5.1158 -3.3261 18 1 11.0390 6.8506 -2.8071 19 1 10.0051 5.5817 -1.0178 20 6 6.6311 6.0103 0.6398 21 6 5.3914 5.1107 0.6095 22 6 3.5659 -0.6971 -0.0043 23 8 2.2831 -1.0930 0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.6974 3.2669 -0.0005 28 1 6.5567 3.2987 0.5904 29 1 5.4662 4.4344 -2.0227 30 1 6.4960 2.9892 -1.8775 31 1 7.7904 5.0733 -2.4550 32 1 8.3135 4.3275 -0.9243 33 1 9.0739 8.5361 -3.7840 34 1 7.3738 5.5863 1.3156 35 1 6.3532 7.0074 0.9813 36 1 5.0236 4.9639 1.6250 37 1 4.6155 5.5808 0.0053 38 1 4.4361 -1.3368 -0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619787358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:58 Heat of formation + Delta-G solvation = 8.095758 kcal Electronic energy + Delta-G solvation = -21602.093940 eV Core-core repulsion = 18253.974835 eV Total energy + Delta-G solvation = -3348.119105 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.69486 -39.70403 -37.60725 -35.18973 -34.55110 -32.59551 -32.07336 -30.39936 -30.09294 -28.15406 -25.52016 -23.89064 -22.82827 -22.08195 -21.48523 -20.41392 -19.68638 -18.17834 -17.20262 -16.88983 -16.52365 -16.09369 -15.09234 -14.75831 -14.56601 -14.22508 -14.14359 -13.76729 -13.65751 -13.56180 -13.17375 -12.95069 -12.87722 -12.32754 -11.95152 -11.78190 -11.52794 -11.12674 -11.04548 -10.82685 -10.58720 -10.27734 -10.12802 -10.00296 -9.76992 -9.48201 -9.28855 -8.80656 -8.58947 -6.97781 -5.93269 -3.29320 0.87954 1.76574 2.28089 3.10992 3.25826 3.36633 3.52040 3.55930 3.62159 4.50920 4.55844 4.61338 4.90179 4.94179 4.97387 5.12539 5.18102 5.31540 5.32621 5.42259 5.43630 5.67281 5.80349 5.84127 6.05198 6.11509 6.17189 6.32380 6.43211 6.58358 6.65112 6.69833 6.72348 6.93398 7.16890 7.62674 7.97550 8.20786 8.34176 8.95183 9.73727 10.11157 11.22577 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034125 B = 0.003702 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.326158 B = 7561.926183 C = 7844.829446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.194 3.806 3 N -0.461 5.461 4 C -0.067 4.067 5 C 0.598 3.402 6 O -0.538 6.538 7 N -0.704 5.704 8 C 0.150 3.850 9 C -0.141 4.141 10 C 0.129 3.871 11 N -0.607 5.607 12 C -0.261 4.261 13 H 0.086 0.914 14 C 0.024 3.976 15 N -0.909 5.909 16 Si 0.882 3.118 17 H -0.288 1.288 18 H -0.303 1.303 19 H -0.270 1.270 20 C 0.152 3.848 21 C -0.140 4.140 22 C 0.008 3.992 23 O -0.199 6.199 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.406 0.594 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.028 0.972 33 H 0.262 0.738 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.656 -18.216 7.653 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.015 4.015 3 N -0.192 5.192 4 C -0.187 4.187 5 C 0.382 3.618 6 O -0.416 6.416 7 N -0.353 5.353 8 C 0.046 3.954 9 C -0.181 4.181 10 C 0.003 3.997 11 N -0.330 5.330 12 C -0.389 4.389 13 H 0.104 0.896 14 C -0.175 4.175 15 N -0.552 5.552 16 Si 0.712 3.288 17 H -0.216 1.216 18 H -0.231 1.231 19 H -0.195 1.195 20 C 0.026 3.974 21 C -0.180 4.180 22 C -0.066 4.066 23 O -0.085 6.085 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.241 0.759 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -15.000 -17.803 7.533 24.468 hybrid contribution 0.724 -1.207 -0.267 1.432 sum -14.276 -19.010 7.266 24.860 Atomic orbital electron populations 1.20314 0.80853 1.05363 1.04995 1.26354 0.96690 0.78334 1.00163 1.70771 1.00808 1.29970 1.17681 1.21928 0.92175 0.93149 1.11414 1.16769 0.86028 0.82213 0.76757 1.90830 1.24204 1.75419 1.51110 1.46091 1.11128 1.05131 1.72932 1.21084 0.86831 0.89655 0.97796 1.22407 1.00352 0.99814 0.95563 1.21315 0.93901 0.86893 0.97620 1.44404 1.74700 1.02051 1.11878 1.18920 1.13861 0.87270 1.18828 0.89618 1.25275 0.98081 0.96578 0.97602 1.69839 1.34751 1.32380 1.18181 0.86970 0.82874 0.80737 0.78211 1.21575 1.23137 1.19451 1.20865 0.91891 0.97741 0.86941 1.22333 1.01076 0.94794 0.99819 1.25291 0.84723 0.95765 1.00781 1.84383 1.16784 1.37931 1.69403 0.88658 0.89168 0.87828 0.75910 0.89723 0.91521 0.92307 0.90696 0.95434 0.92772 0.95669 0.91275 0.92025 0.91221 0.75292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.12 16 2 C 0.19 1.80 8.30 -13.08 -0.11 1.69 16 3 N -0.46 -5.55 11.06 -7.65 -0.08 -5.63 16 4 C -0.07 -0.87 6.99 -83.02 -0.58 -1.45 16 5 C 0.60 9.29 7.78 -12.52 -0.10 9.19 16 6 O -0.54 -9.79 16.55 5.27 0.09 -9.70 16 7 N -0.70 -10.49 5.07 -54.82 -0.28 -10.76 16 8 C 0.15 2.53 2.41 -67.87 -0.16 2.37 16 9 C -0.14 -2.72 5.66 -26.59 -0.15 -2.87 16 10 C 0.13 2.93 4.20 -3.71 -0.02 2.91 16 11 N -0.61 -14.55 2.77 -172.32 -0.48 -15.02 16 12 C -0.26 -7.32 10.03 -15.06 -0.15 -7.47 16 13 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 14 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 15 N -0.91 -28.11 13.97 55.49 0.78 -27.33 16 16 Si 0.88 22.88 24.34 -169.99 -4.14 18.74 16 17 H -0.29 -7.27 6.62 56.52 0.37 -6.90 16 18 H -0.30 -7.96 7.11 56.52 0.40 -7.56 16 19 H -0.27 -6.90 6.64 56.52 0.38 -6.52 16 20 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 21 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 22 C 0.01 0.08 11.95 29.96 0.36 0.44 16 23 O -0.20 -1.91 10.73 6.51 0.07 -1.84 16 24 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.41 5.41 8.33 -40.82 -0.34 5.07 16 28 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 29 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.08 1.86 4.50 -51.93 -0.23 1.63 16 32 H 0.03 0.63 7.07 -51.93 -0.37 0.26 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 34 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.23 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 314.95 15.07 4.75 4.75 Total: -1.00 -34.23 314.95 -5.26 -39.48 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.16 Total: 1.26 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.79 Total: 6.06 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.07 Total: -58.75 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.16 Total: -11.54 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.14 Total: 18.74 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.23 -5.26 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619787358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.579 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds