Wall clock time and date at job start Tue Mar 31 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29932 * 125.38048 * 2 1 4 4 C 1.36065 * 108.48131 * 179.97438 * 3 2 1 5 5 C 1.47421 * 126.45356 * 179.97438 * 4 3 2 6 6 O 1.21606 * 120.00306 * 180.02562 * 5 4 3 7 7 N 1.34781 * 119.99658 * 0.03071 * 5 4 3 8 8 C 1.46499 * 119.99981 * 179.97438 * 7 5 4 9 9 C 1.53081 * 109.45080 * 84.78441 * 8 7 5 10 10 C 1.53190 * 109.29209 * 181.24433 * 9 8 7 11 11 N 1.46921 * 108.89311 * 305.57883 * 10 9 8 12 12 C 1.36940 * 120.63187 * 233.51481 * 11 10 9 13 13 H 1.08001 * 120.00319 * 152.61971 * 12 11 10 14 14 C 1.38813 * 119.99903 * 332.62203 * 12 11 10 15 15 N 1.31624 * 120.00070 * 159.34992 * 14 12 11 16 16 Si 1.86800 * 120.00077 * 339.35529 * 14 12 11 17 17 H 1.48494 * 109.47321 * 92.87851 * 16 14 12 18 18 H 1.48501 * 109.47194 * 212.88430 * 16 14 12 19 19 H 1.48509 * 109.46983 * 332.87654 * 16 14 12 20 20 C 1.46923 * 118.74178 * 53.54201 * 11 10 9 21 21 C 1.53035 * 109.46006 * 204.99622 * 8 7 5 22 22 C 1.36097 * 107.09775 * 0.22831 * 4 3 2 23 23 O 1.34052 * 125.37628 * 179.97438 * 2 1 3 24 24 H 1.08998 * 109.47036 * 89.99703 * 1 2 3 25 25 H 1.08993 * 109.47135 * 210.00138 * 1 2 3 26 26 H 1.09001 * 109.47100 * 330.00526 * 1 2 3 27 27 H 0.96997 * 119.99900 * 359.97438 * 7 5 4 28 28 H 1.08996 * 109.45705 * 324.97360 * 8 7 5 29 29 H 1.08992 * 109.38800 * 61.36852 * 9 8 7 30 30 H 1.09002 * 109.61927 * 301.26130 * 9 8 7 31 31 H 1.08999 * 109.58729 * 185.71870 * 10 9 8 32 32 H 1.09004 * 109.58886 * 65.43758 * 10 9 8 33 33 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 34 34 H 1.09004 * 109.59094 * 66.17180 * 20 11 10 35 35 H 1.09001 * 109.59077 * 186.46452 * 20 11 10 36 36 H 1.09002 * 109.49848 * 58.66419 * 21 8 7 37 37 H 1.08999 * 109.49849 * 298.56228 * 21 8 7 38 38 H 1.08000 * 126.52356 * 179.77472 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0003 6 8 5.8605 1.0618 0.0004 7 7 4.5879 2.8825 -0.0001 8 6 5.7633 3.7570 0.0002 9 6 6.2511 3.9557 -1.4372 10 6 7.4983 4.8452 -1.4299 11 7 7.1893 6.0920 -0.7168 12 6 7.4177 7.3073 -1.3052 13 1 6.8252 8.1646 -1.0215 14 6 8.4109 7.4374 -2.2662 15 7 8.3801 8.4454 -3.1122 16 14 9.7909 6.1820 -2.3591 17 1 9.4260 5.1158 -3.3261 18 1 11.0390 6.8506 -2.8071 19 1 10.0051 5.5817 -1.0178 20 6 6.6311 6.0103 0.6398 21 6 5.3914 5.1107 0.6095 22 6 3.5659 -0.6971 -0.0043 23 8 2.2831 -1.0930 0.0005 24 1 -0.3633 0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.6974 3.2669 -0.0005 28 1 6.5567 3.2987 0.5904 29 1 5.4662 4.4344 -2.0227 30 1 6.4960 2.9892 -1.8775 31 1 7.7904 5.0733 -2.4550 32 1 8.3135 4.3275 -0.9243 33 1 9.0739 8.5361 -3.7840 34 1 7.3738 5.5863 1.3156 35 1 6.3532 7.0074 0.9813 36 1 5.0236 4.9639 1.6250 37 1 4.6155 5.5808 0.0053 38 1 4.4361 -1.3368 -0.0086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619787358.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:55:57 Heat of formation + Delta-G solvation = -19.514560 kcal Electronic energy + Delta-G solvation = -21603.291213 eV Core-core repulsion = 18253.974835 eV Total energy + Delta-G solvation = -3349.316378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.47003 -40.98611 -39.17689 -36.19375 -35.93697 -34.07072 -33.17341 -32.01486 -31.76433 -28.81546 -27.14421 -25.23038 -24.45718 -23.44672 -22.45059 -21.59561 -21.14812 -19.28906 -18.74795 -17.96378 -17.62904 -17.46885 -16.80442 -16.04892 -15.94750 -15.59370 -15.38477 -14.93703 -14.87250 -14.74929 -14.53933 -14.11981 -13.88999 -13.87051 -13.46391 -13.26331 -12.75232 -12.60302 -12.35392 -12.25610 -12.09241 -11.91738 -11.78870 -11.57997 -11.50179 -11.27886 -10.76564 -10.23956 -9.96120 -8.98711 -8.18184 -5.49903 0.03581 0.93216 1.28971 1.39453 1.48319 1.57094 2.01116 2.17859 2.40056 2.86872 3.02529 3.32090 3.64984 3.77624 3.79350 3.90207 4.18713 4.27275 4.41000 4.43041 4.51370 4.63251 4.64991 4.68445 4.74190 4.78207 4.86239 4.91022 4.97563 5.05007 5.12291 5.24503 5.36149 5.41839 5.85497 6.11869 6.27549 6.57087 6.88920 7.04173 7.59819 8.00998 9.01462 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.034125 B = 0.003702 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.326158 B = 7561.926183 C = 7844.829446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.202 3.798 3 N -0.489 5.489 4 C -0.099 4.099 5 C 0.598 3.402 6 O -0.570 6.570 7 N -0.696 5.696 8 C 0.159 3.841 9 C -0.131 4.131 10 C 0.126 3.874 11 N -0.620 5.620 12 C -0.246 4.246 13 H 0.060 0.940 14 C -0.032 4.032 15 N -0.955 5.955 16 Si 0.939 3.061 17 H -0.280 1.280 18 H -0.309 1.309 19 H -0.262 1.262 20 C 0.145 3.855 21 C -0.126 4.126 22 C 0.025 3.975 23 O -0.196 6.196 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.415 0.585 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.037 0.963 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.366 -20.669 8.903 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.007 4.007 3 N -0.220 5.220 4 C -0.218 4.218 5 C 0.384 3.616 6 O -0.450 6.450 7 N -0.346 5.346 8 C 0.054 3.946 9 C -0.171 4.171 10 C 0.001 3.999 11 N -0.344 5.344 12 C -0.376 4.376 13 H 0.078 0.922 14 C -0.227 4.227 15 N -0.601 5.601 16 Si 0.769 3.231 17 H -0.207 1.207 18 H -0.237 1.237 19 H -0.187 1.187 20 C 0.020 3.980 21 C -0.165 4.165 22 C -0.049 4.049 23 O -0.082 6.082 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.252 0.748 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.055 0.945 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -16.754 -20.280 8.819 27.745 hybrid contribution 1.107 -0.485 -0.604 1.351 sum -15.647 -20.765 8.215 27.267 Atomic orbital electron populations 1.20628 0.77510 1.06908 1.06456 1.27335 0.98162 0.77536 0.97697 1.70739 1.00567 1.31267 1.19457 1.21665 0.91972 0.93731 1.14448 1.17069 0.86446 0.82337 0.75706 1.90805 1.25660 1.75927 1.52631 1.45889 1.10843 1.04973 1.72870 1.20825 0.87473 0.90398 0.95882 1.22243 0.98569 0.98865 0.97414 1.21279 0.95615 0.86930 0.96110 1.44533 1.75059 1.01030 1.13802 1.18910 1.12545 0.88185 1.17935 0.92208 1.25847 1.00321 0.98623 0.97931 1.69953 1.35750 1.34866 1.19537 0.86021 0.79765 0.78782 0.78541 1.20696 1.23730 1.18686 1.21092 0.93315 0.98924 0.84665 1.22161 0.99217 0.93331 1.01799 1.25716 0.85625 0.95180 0.98413 1.84435 1.16491 1.38044 1.69237 0.87055 0.86820 0.87030 0.74846 0.90527 0.92033 0.92157 0.93094 0.95163 0.92943 0.94458 0.91142 0.88623 0.91284 0.73082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.31 10.51 71.24 0.75 0.44 16 2 C 0.20 3.21 8.30 88.39 0.73 3.95 16 3 N -0.49 -10.82 11.06 -293.03 -3.24 -14.06 16 4 C -0.10 -2.44 6.99 40.41 0.28 -2.15 16 5 C 0.60 17.80 7.78 86.66 0.67 18.48 16 6 O -0.57 -20.17 16.55 -4.05 -0.07 -20.24 16 7 N -0.70 -19.58 5.07 -445.62 -2.26 -21.85 16 8 C 0.16 5.08 2.41 45.03 0.11 5.19 16 9 C -0.13 -4.90 5.66 30.68 0.17 -4.73 16 10 C 0.13 5.66 4.20 86.36 0.36 6.02 16 11 N -0.62 -29.40 2.77 -699.09 -1.94 -31.34 16 12 C -0.25 -14.02 10.03 84.03 0.84 -13.17 16 13 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 14 C -0.03 -1.92 5.23 84.86 0.44 -1.47 16 15 N -0.95 -60.65 13.97 21.65 0.30 -60.35 16 16 Si 0.94 47.96 24.34 68.60 1.67 49.63 16 17 H -0.28 -13.76 6.62 99.48 0.66 -13.10 16 18 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 19 H -0.26 -12.91 6.64 99.48 0.66 -12.25 16 20 C 0.15 5.42 6.52 86.37 0.56 5.98 16 21 C -0.13 -3.75 5.55 30.67 0.17 -3.58 16 22 C 0.02 0.46 11.95 67.32 0.80 1.27 16 23 O -0.20 -3.24 10.73 0.38 0.00 -3.23 16 24 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 26 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.41 10.28 8.33 -92.71 -0.77 9.51 16 28 H 0.08 2.64 7.58 -2.39 -0.02 2.63 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.05 2.52 4.50 -2.39 -0.01 2.51 16 32 H 0.03 1.35 7.07 -2.38 -0.02 1.33 16 33 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 2.59 7.93 -2.39 -0.02 2.57 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.25 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -74.88 314.95 0.60 -74.28 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.22 Total: 10.95 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.91 Total: 16.21 kcal Atomic # 7 Polarization: -120.46 SS G_CDS: -7.14 Total: -127.60 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.06 Total: -23.47 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 1.67 Total: 49.63 kcal Total: -74.88 0.60 -74.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619787358.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.768 kcal (2) G-P(sol) polarization free energy of solvation -74.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds