Wall clock time and date at job start Tue Mar 31 2020 02:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36699 * 126.58577 * 2 1 4 4 C 1.47349 * 125.78729 * 359.97438 * 3 2 1 5 5 O 1.21547 * 119.99690 * 359.97438 * 4 3 2 6 6 O 1.34783 * 120.00256 * 180.02562 * 4 3 2 7 7 C 1.34885 * 116.99910 * 180.02562 * 6 4 3 8 8 H 1.07998 * 119.99826 * 359.97438 * 7 6 4 9 9 C 1.38775 * 119.99908 * 179.97438 * 7 6 4 10 10 N 1.31441 * 120.00146 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00164 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47079 * 359.97438 * 11 9 7 13 13 H 1.48495 * 109.47405 * 119.99685 * 11 9 7 14 14 H 1.48497 * 109.47373 * 240.00178 * 11 9 7 15 15 N 1.34446 * 108.43201 * 179.97438 * 3 2 1 16 16 N 1.28759 * 109.51703 * 0.02562 * 15 3 2 17 17 N 1.34795 * 126.58656 * 179.68648 * 2 1 3 18 18 C 1.46503 * 126.58817 * 0.02562 * 17 2 1 19 19 C 1.52995 * 109.47248 * 89.99792 * 18 17 2 20 20 C 1.54270 * 110.03286 * 292.16932 * 19 18 17 21 21 C 1.54885 * 104.19524 * 217.10480 * 20 19 18 22 22 C 1.54882 * 102.74981 * 37.94308 * 21 20 19 23 23 C 1.53879 * 110.03453 * 175.00411 * 19 18 17 24 24 H 1.09002 * 109.47152 * 90.02437 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.02537 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.02518 * 1 2 3 27 27 H 0.96999 * 120.00366 * 180.02562 * 10 9 7 28 28 H 1.08998 * 109.47139 * 210.00482 * 18 17 2 29 29 H 1.09005 * 109.46732 * 330.00081 * 18 17 2 30 30 H 1.08998 * 110.01842 * 53.61203 * 19 18 17 31 31 H 1.09000 * 110.48482 * 335.78820 * 20 19 18 32 32 H 1.09000 * 110.48284 * 98.42873 * 20 19 18 33 33 H 1.09001 * 110.75807 * 279.62864 * 21 20 19 34 34 H 1.09004 * 110.91424 * 156.33316 * 21 20 19 35 35 H 1.09007 * 110.48864 * 203.37764 * 22 21 20 36 36 H 1.08998 * 110.48858 * 80.73832 * 22 21 20 37 37 H 1.09000 * 110.03147 * 238.57398 * 23 19 18 38 38 H 1.09007 * 110.02826 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3218 1.0976 0.0000 4 6 1.8756 2.5020 -0.0005 5 8 0.6883 2.7623 -0.0015 6 8 2.7839 3.4977 -0.0010 7 6 2.3087 4.7601 -0.0009 8 1 1.2431 4.9359 -0.0009 9 6 3.1890 5.8329 -0.0009 10 7 4.4858 5.6189 -0.0003 11 14 2.5309 7.5811 -0.0015 12 1 1.0462 7.5511 -0.0027 13 1 3.0111 8.2913 1.2110 14 1 3.0120 8.2907 -1.2140 15 7 3.5993 0.6788 0.0006 16 7 3.6300 -0.6085 0.0004 17 7 2.3105 -1.0823 0.0059 18 6 1.8864 -2.4846 0.0131 19 6 1.7392 -2.9803 -1.4269 20 6 0.5530 -2.2704 -2.1115 21 6 -0.0821 -3.3662 -3.0031 22 6 0.0445 -4.6364 -2.1259 23 6 1.4159 -4.4847 -1.4361 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 0.8902 0.5134 26 1 -0.3633 -0.8898 0.5142 27 1 5.1012 6.3688 0.0001 28 1 2.6329 -3.0873 0.5304 29 1 0.9291 -2.5721 0.5270 30 1 2.6584 -2.7926 -1.9819 31 1 -0.1632 -1.9210 -1.3678 32 1 0.9065 -1.4394 -2.7219 33 1 0.4770 -3.4807 -3.9317 34 1 -1.1287 -3.1418 -3.2093 35 1 0.0268 -5.5321 -2.7468 36 1 -0.7539 -4.6693 -1.3846 37 1 2.1777 -5.0269 -1.9962 38 1 1.3642 -4.8617 -0.4146 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789182038.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:27:02 Heat of formation + Delta-G solvation = -0.084102 kcal Electronic energy + Delta-G solvation = -21726.388755 eV Core-core repulsion = 18377.914945 eV Total energy + Delta-G solvation = -3348.473810 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.86032 -38.85632 -38.53602 -35.18716 -34.52718 -32.12976 -32.09746 -30.01726 -29.03332 -27.76719 -25.64880 -25.25240 -22.95469 -21.38487 -20.76663 -19.87284 -19.81497 -17.76015 -17.45546 -16.29839 -16.11273 -15.38996 -15.07417 -14.78697 -14.33393 -14.25133 -13.84557 -13.82116 -13.75015 -13.07119 -12.80509 -12.49773 -12.45119 -11.78941 -11.66637 -11.47978 -11.41290 -11.32185 -11.31047 -11.19056 -10.90609 -10.80674 -10.59305 -10.43679 -10.36576 -9.79289 -9.77311 -9.10616 -8.67165 -8.52228 -6.36474 -4.02027 1.48282 2.28970 2.33458 3.19389 3.22169 3.30077 3.93361 4.09203 4.14781 4.21476 4.27399 4.43957 4.59818 4.67542 4.85314 4.89730 5.00003 5.09257 5.18788 5.21434 5.28898 5.34432 5.37869 5.46728 5.54879 5.59679 5.61675 5.77604 5.82694 5.92191 5.95191 5.99261 6.05522 6.19207 6.74479 6.90911 7.42568 7.96846 8.44805 8.72807 9.09870 9.90987 10.80574 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.036463 B = 0.003736 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.711036 B = 7493.286125 C = 7862.640599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.107 3.893 3 C -0.051 4.051 4 C 0.475 3.525 5 O -0.553 6.553 6 O -0.189 6.189 7 C -0.379 4.379 8 H 0.099 0.901 9 C 0.042 3.958 10 N -0.852 5.852 11 Si 0.945 3.055 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.276 1.276 15 N -0.181 5.181 16 N -0.084 5.084 17 N -0.366 5.366 18 C 0.130 3.870 19 C -0.110 4.110 20 C -0.132 4.132 21 C -0.124 4.124 22 C -0.125 4.125 23 C -0.116 4.116 24 H 0.089 0.911 25 H 0.112 0.888 26 H 0.068 0.932 27 H 0.270 0.730 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.232 -20.137 -2.545 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.029 4.029 3 C -0.189 4.189 4 C 0.322 3.678 5 O -0.451 6.451 6 O -0.094 6.094 7 C -0.456 4.456 8 H 0.117 0.883 9 C -0.164 4.164 10 N -0.488 5.488 11 Si 0.769 3.231 12 H -0.188 1.188 13 H -0.201 1.201 14 H -0.201 1.201 15 N -0.054 5.054 16 N -0.063 5.063 17 N -0.153 5.153 18 C 0.009 3.991 19 C -0.129 4.129 20 C -0.169 4.169 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.154 4.154 24 H 0.107 0.893 25 H 0.130 0.870 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.804 -20.336 -2.528 21.928 hybrid contribution -1.065 0.900 -0.009 1.394 sum -8.868 -19.436 -2.537 21.514 Atomic orbital electron populations 1.20757 0.85269 1.04786 1.04236 1.21650 0.95796 0.86323 0.99126 1.20460 0.88527 0.93690 1.16229 1.19135 0.84505 0.84156 0.80037 1.90601 1.17534 1.83908 1.53081 1.84007 1.36507 1.14915 1.73933 1.21380 0.94241 0.78004 1.51938 0.88309 1.25413 0.94950 0.99827 0.96182 1.70048 1.01444 1.32293 1.45002 0.85590 0.79226 0.80139 0.78125 1.18836 1.20142 1.20145 1.74824 1.19292 1.02877 1.08439 1.81958 0.95954 1.04130 1.24301 1.50319 1.06582 1.06821 1.51577 1.22098 1.01897 0.76735 0.98411 1.22236 1.00453 0.95693 0.94558 1.22697 0.96763 0.98162 0.99272 1.22485 1.00825 0.94603 0.98235 1.22368 0.96913 0.98103 0.98828 1.22128 0.97733 0.94251 1.01262 0.89284 0.86979 0.91333 0.91992 0.87913 0.88381 0.89718 0.90573 0.91337 0.91492 0.91321 0.91583 0.91465 0.91149 0.91291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 7.86 36.01 0.28 -0.93 16 2 C 0.11 1.84 6.56 -81.85 -0.54 1.30 16 3 C -0.05 -1.16 7.02 -83.57 -0.59 -1.75 16 4 C 0.48 12.67 7.90 34.44 0.27 12.94 16 5 O -0.55 -14.61 13.97 -19.30 -0.27 -14.88 16 6 O -0.19 -5.80 9.75 -21.87 -0.21 -6.02 16 7 C -0.38 -11.50 9.65 30.93 0.30 -11.21 16 8 H 0.10 2.94 6.86 -52.49 -0.36 2.58 16 9 C 0.04 1.20 5.49 -17.52 -0.10 1.11 16 10 N -0.85 -25.89 13.67 55.48 0.76 -25.13 16 11 Si 0.94 21.53 29.55 -169.99 -5.02 16.51 16 12 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 15 N -0.18 -4.22 12.39 32.83 0.41 -3.81 16 16 N -0.08 -1.63 13.78 60.35 0.83 -0.80 16 17 N -0.37 -5.54 3.54 -56.83 -0.20 -5.75 16 18 C 0.13 1.24 5.38 -4.04 -0.02 1.22 16 19 C -0.11 -0.96 3.15 -89.50 -0.28 -1.24 16 20 C -0.13 -1.18 5.21 -25.07 -0.13 -1.31 16 21 C -0.12 -0.90 6.91 -24.74 -0.17 -1.07 16 22 C -0.12 -0.75 6.83 -25.08 -0.17 -0.92 16 23 C -0.12 -0.73 6.46 -25.61 -0.17 -0.89 16 24 H 0.09 1.06 7.07 -51.93 -0.37 0.69 16 25 H 0.11 1.74 6.43 -51.93 -0.33 1.40 16 26 H 0.07 0.63 6.91 -51.93 -0.36 0.27 16 27 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 0.71 7.01 -51.93 -0.36 0.34 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.64 4.99 -51.93 -0.26 0.38 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.35 7.67 -51.93 -0.40 -0.05 16 LS Contribution 316.78 15.07 4.77 4.77 Total: -1.00 -35.48 316.78 -5.20 -40.69 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -4.96 Total: -2.84 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.31 Total: -2.75 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 1.80 Total: -35.48 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.48 Total: -20.89 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.48 -5.20 -40.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789182038.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.602 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds