Wall clock time and date at job start Tue Mar 31 2020 00:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30434 * 125.99393 * 2 1 4 4 N 1.39932 * 108.91663 * 180.26194 * 3 2 1 5 5 H 0.97005 * 125.74086 * 179.67590 * 4 3 2 6 6 C 1.34224 * 108.51247 * 359.70692 * 4 3 2 7 7 C 1.38123 * 107.40852 * 0.02562 * 6 4 3 8 8 C 1.47290 * 126.42126 * 179.97438 * 7 6 4 9 9 O 1.21528 * 119.99785 * 180.02562 * 8 7 6 10 10 O 1.34751 * 120.00497 * 0.02562 * 8 7 6 11 11 C 1.45203 * 117.00140 * 180.02562 * 10 8 7 12 12 C 1.53041 * 109.45873 * 270.07000 * 11 10 8 13 13 C 1.53190 * 109.31249 * 178.61720 * 12 11 10 14 14 N 1.46919 * 108.77563 * 54.62884 * 13 12 11 15 15 C 1.36946 * 120.62791 * 126.41749 * 14 13 12 16 16 H 1.08001 * 119.99718 * 331.82372 * 15 14 13 17 17 C 1.38810 * 120.00117 * 151.82357 * 15 14 13 18 18 N 1.31622 * 119.99791 * 343.08068 * 17 15 14 19 19 Si 1.86800 * 120.00151 * 163.07926 * 17 15 14 20 20 H 1.48499 * 109.47015 * 60.00031 * 19 17 15 21 21 H 1.48501 * 109.47145 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.47060 * 299.99871 * 19 17 15 23 23 C 1.46921 * 118.74373 * 306.39445 * 14 13 12 24 24 C 1.53042 * 109.45971 * 150.00052 * 11 10 8 25 25 H 1.09000 * 109.47582 * 270.21495 * 1 2 3 26 26 H 1.09004 * 109.46803 * 30.22160 * 1 2 3 27 27 H 1.09001 * 109.47191 * 150.21421 * 1 2 3 28 28 H 1.08002 * 126.29238 * 179.97438 * 6 4 3 29 29 H 1.08996 * 109.44500 * 30.03598 * 11 10 8 30 30 H 1.09000 * 109.49517 * 298.56255 * 12 11 10 31 31 H 1.08996 * 109.49647 * 58.66076 * 12 11 10 32 32 H 1.08998 * 109.58321 * 294.84560 * 13 12 11 33 33 H 1.08995 * 109.70564 * 174.49135 * 13 12 11 34 34 H 0.96999 * 119.99934 * 180.02562 * 18 17 15 35 35 H 1.09000 * 109.58471 * 293.82056 * 23 14 13 36 36 H 1.09004 * 109.70588 * 173.46375 * 23 14 13 37 37 H 1.09005 * 109.49601 * 301.33981 * 24 11 10 38 38 H 1.08999 * 109.49468 * 61.39929 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6111 0.6444 -0.0061 5 1 4.3840 1.2306 -0.0118 6 6 3.6448 -0.6974 -0.0033 7 6 2.3376 -1.1435 0.0039 8 6 1.8928 -2.5477 0.0086 9 8 0.7060 -2.8091 0.0144 10 8 2.8018 -3.5425 0.0064 11 6 2.2913 -4.9018 0.0107 12 6 2.1165 -5.3762 1.4552 13 6 1.5454 -6.7977 1.4560 14 7 2.4139 -7.6566 0.6397 15 6 2.9271 -8.8183 1.1523 16 1 3.1001 -8.9097 2.2144 17 6 3.2248 -9.8781 0.3067 18 7 2.7217 -9.9113 -0.9091 19 14 4.3394 -11.2572 0.8944 20 1 3.7366 -11.9071 2.0857 21 1 4.4997 -12.2599 -0.1892 22 1 5.6685 -10.7004 1.2534 23 6 2.7211 -7.2460 -0.7371 24 6 3.2791 -5.8196 -0.7134 25 1 -0.3634 0.0039 1.0276 26 1 -0.3633 0.8880 -0.5173 27 1 -0.3634 -0.8919 -0.5105 28 1 4.5310 -1.3147 -0.0069 29 1 1.3287 -4.9296 -0.4997 30 1 3.0831 -5.3722 1.9589 31 1 1.4310 -4.7084 1.9769 32 1 0.5405 -6.7879 1.0341 33 1 1.5096 -7.1787 2.4766 34 1 2.9295 -10.6521 -1.4999 35 1 1.8120 -7.2729 -1.3379 36 1 3.4621 -7.9211 -1.1654 37 1 3.4210 -5.4673 -1.7352 38 1 4.2349 -5.8109 -0.1895 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805898410.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:56 Heat of formation + Delta-G solvation = 0.626256 kcal Electronic energy + Delta-G solvation = -21690.520514 eV Core-core repulsion = 18342.077507 eV Total energy + Delta-G solvation = -3348.443007 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63514 -39.83411 -37.33057 -35.68874 -33.21339 -32.70455 -30.89492 -30.21842 -29.53521 -28.19709 -25.32805 -23.76363 -22.28526 -21.99331 -20.78809 -19.86960 -19.29809 -18.33011 -17.06122 -16.87043 -15.85182 -15.63117 -14.93425 -14.75550 -14.53585 -13.96596 -13.55887 -13.27212 -13.12869 -13.00617 -12.95993 -12.70798 -12.40835 -12.22429 -11.51106 -11.24381 -11.17873 -11.01812 -10.72717 -10.70117 -10.41042 -10.19285 -10.16045 -9.87517 -9.78901 -9.64255 -9.41264 -9.10068 -8.48774 -6.72005 -5.81459 -3.24066 1.21838 1.87185 2.36638 3.07734 3.24164 3.38339 3.43857 3.45093 4.27430 4.46402 4.48263 4.92548 5.18384 5.26159 5.29676 5.39038 5.45846 5.54196 5.56277 5.65972 5.78675 5.80577 6.03644 6.21908 6.25618 6.44300 6.45997 6.53356 6.61087 6.74999 6.78019 6.90962 7.01154 7.24546 7.29472 7.59083 7.77732 8.12323 8.42416 9.18289 9.81106 10.37931 11.27735 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041431 B = 0.003506 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.659643 B = 7984.836289 C = 8229.936225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.139 3.861 3 N -0.303 5.303 4 N -0.463 5.463 5 H 0.445 0.555 6 C 0.134 3.866 7 C -0.276 4.276 8 C 0.537 3.463 9 O -0.513 6.513 10 O -0.358 6.358 11 C 0.101 3.899 12 C -0.146 4.146 13 C 0.149 3.851 14 N -0.593 5.593 15 C -0.255 4.255 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.282 1.282 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.174 3.826 24 C -0.135 4.135 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.196 0.804 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.060 0.940 34 H 0.255 0.745 35 H 0.022 0.978 36 H 0.096 0.904 37 H 0.057 0.943 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 19.247 0.668 19.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 N -0.126 5.126 4 N -0.167 5.167 5 H 0.290 0.710 6 C -0.019 4.019 7 C -0.289 4.289 8 C 0.382 3.618 9 O -0.403 6.403 10 O -0.275 6.275 11 C 0.047 3.953 12 C -0.185 4.185 13 C 0.022 3.978 14 N -0.315 5.315 15 C -0.385 4.385 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.734 3.266 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.048 3.952 24 C -0.174 4.174 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.213 0.787 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.114 0.886 37 H 0.076 0.924 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.830 20.233 0.547 20.323 hybrid contribution 1.071 -1.334 0.255 1.729 sum 2.901 18.899 0.802 19.137 Atomic orbital electron populations 1.20406 0.85411 1.04324 1.03864 1.22530 0.97497 0.88367 0.94441 1.77181 0.86260 1.22203 1.26978 1.46124 1.07891 1.05642 1.57050 0.70991 1.23401 0.99570 0.85133 0.93791 1.19542 0.92596 0.91821 1.24943 1.19913 0.84284 0.85035 0.72583 1.90788 1.17768 1.84633 1.47069 1.86575 1.40011 1.17290 1.83600 1.22916 0.98853 0.75463 0.98037 1.22455 1.01734 0.99357 0.94958 1.20862 0.92677 0.88182 0.96081 1.44110 1.54079 1.22413 1.10939 1.19160 1.36050 0.90176 0.93075 0.91578 1.25063 1.00331 0.97141 0.97018 1.70010 1.44545 1.32208 1.07986 0.86343 0.81009 0.81557 0.77688 1.20852 1.21617 1.20993 1.20802 0.98966 0.89147 0.86294 1.22455 0.98817 0.97541 0.98622 0.89892 0.90775 0.88455 0.78686 0.90236 0.91495 0.92575 0.96007 0.92150 0.93479 0.95974 0.88624 0.92429 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.92 36.00 0.36 -0.51 16 2 C 0.14 1.73 7.27 -82.01 -0.60 1.14 16 3 N -0.30 -3.50 12.63 33.90 0.43 -3.07 16 4 N -0.46 -3.82 7.28 30.86 0.22 -3.59 16 5 H 0.45 1.88 8.96 -182.72 -1.64 0.24 16 6 C 0.13 1.24 11.86 -16.55 -0.20 1.04 16 7 C -0.28 -3.57 6.13 -105.08 -0.64 -4.21 16 8 C 0.54 8.53 7.93 34.41 0.27 8.81 16 9 O -0.51 -9.24 14.18 -19.29 -0.27 -9.51 16 10 O -0.36 -5.88 9.71 -40.63 -0.39 -6.27 16 11 C 0.10 1.86 2.42 -26.69 -0.06 1.80 16 12 C -0.15 -2.72 5.72 -26.61 -0.15 -2.87 16 13 C 0.15 3.19 6.52 -3.72 -0.02 3.17 16 14 N -0.59 -14.85 2.99 -172.33 -0.52 -15.36 16 15 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 18 N -0.90 -25.89 11.19 55.49 0.62 -25.27 16 19 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.17 4.11 5.30 -3.72 -0.02 4.09 16 24 C -0.13 -2.60 5.74 -26.61 -0.15 -2.75 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.10 1.16 6.56 -51.93 -0.34 0.82 16 28 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 29 H 0.08 1.57 7.16 -51.93 -0.37 1.20 16 30 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 2.49 6.07 -51.93 -0.31 2.18 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 318.26 15.07 4.80 4.80 Total: -1.00 -32.47 318.26 -8.02 -40.49 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.43 Total: -1.19 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -1.45 Total: 2.60 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.76 Total: -47.30 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.67 Total: -15.78 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.47 -8.02 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805898410.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.118 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds