Wall clock time and date at job start Tue Mar 31 2020 02:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29954 * 125.30370 * 2 1 4 4 O 1.41871 * 107.41458 * 179.97438 * 3 2 1 5 5 N 1.41874 * 106.39368 * 0.02562 * 4 3 2 6 6 C 1.29961 * 107.41115 * 359.97438 * 5 4 3 7 7 C 1.50691 * 125.30453 * 180.26507 * 6 5 4 8 8 C 1.50699 * 109.47210 * 269.69007 * 7 6 5 9 9 O 1.21299 * 120.00214 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00265 * 179.97438 * 8 7 6 11 11 C 1.37092 * 119.99979 * 0.02562 * 10 8 7 12 12 H 1.08001 * 120.00069 * 233.93883 * 11 10 8 13 13 C 1.38945 * 120.00293 * 53.93350 * 11 10 8 14 14 N 1.31411 * 120.00224 * 22.98331 * 13 11 10 15 15 Si 1.86802 * 120.00057 * 202.98621 * 13 11 10 16 16 H 1.48500 * 109.47345 * 90.00161 * 15 13 11 17 17 H 1.48509 * 109.47121 * 209.99996 * 15 13 11 18 18 H 1.48500 * 109.47236 * 329.99523 * 15 13 11 19 19 C 1.46497 * 120.00241 * 180.02562 * 10 8 7 20 20 C 1.54265 * 110.03309 * 239.38002 * 19 10 8 21 21 C 1.54968 * 104.15841 * 217.13385 * 20 19 10 22 22 C 1.54888 * 102.77826 * 37.88877 * 21 20 19 23 23 C 1.53875 * 110.03371 * 122.15923 * 19 10 8 24 24 H 1.08997 * 109.47361 * 269.99944 * 1 2 3 25 25 H 1.08994 * 109.47384 * 30.00013 * 1 2 3 26 26 H 1.09010 * 109.46822 * 150.00421 * 1 2 3 27 27 H 1.09000 * 109.47503 * 29.69153 * 7 6 5 28 28 H 1.09001 * 109.47001 * 149.69511 * 7 6 5 29 29 H 0.96997 * 120.00975 * 174.67639 * 14 13 11 30 30 H 1.09010 * 110.01729 * 0.76763 * 19 10 8 31 31 H 1.08995 * 110.48586 * 335.77997 * 20 19 10 32 32 H 1.08998 * 110.48800 * 98.42837 * 20 19 10 33 33 H 1.08997 * 110.72278 * 279.57112 * 21 20 19 34 34 H 1.09004 * 110.92239 * 156.29655 * 21 20 19 35 35 H 1.08997 * 110.48889 * 203.40670 * 22 21 20 36 36 H 1.09000 * 110.60017 * 80.81454 * 22 21 20 37 37 H 1.09003 * 110.02968 * 238.56986 * 23 19 10 38 38 H 1.08996 * 110.02807 * 359.95385 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0606 0.0000 4 8 3.6081 0.6248 0.0006 5 7 3.5711 -0.7935 0.0003 6 6 2.3213 -1.1499 0.0002 7 6 1.8210 -2.5713 0.0056 8 6 1.6489 -3.0487 -1.4134 9 8 1.9075 -2.3077 -2.3382 10 7 1.2085 -4.2994 -1.6549 11 6 0.9167 -5.1372 -0.6097 12 1 1.3750 -6.1137 -0.5562 13 6 0.0314 -4.7301 0.3807 14 7 -0.8533 -3.7924 0.1263 15 14 0.0989 -5.5157 2.0742 16 1 1.0309 -4.7484 2.9391 17 1 -1.2577 -5.5069 2.6784 18 1 0.5770 -6.9162 1.9515 19 6 1.0417 -4.7637 -3.0343 20 6 -0.4250 -5.1734 -3.2803 21 6 -0.3226 -6.4090 -4.2100 22 6 0.9197 -7.1512 -3.6578 23 6 1.8966 -6.0204 -3.2746 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5138 27 1 2.5418 -3.2083 0.5183 28 1 0.8628 -2.6173 0.5231 29 1 -1.5210 -3.5621 0.7911 30 1 1.3312 -3.9764 -3.7306 31 1 -0.9087 -5.4419 -2.3412 32 1 -0.9686 -4.3678 -3.7738 33 1 -0.1615 -6.1019 -5.2433 34 1 -1.2130 -7.0325 -4.1283 35 1 1.3565 -7.7883 -4.4268 36 1 0.6554 -7.7408 -2.7799 37 1 2.6003 -5.8433 -4.0879 38 1 2.4361 -6.2843 -2.3651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845578422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:33:49 Heat of formation + Delta-G solvation = 31.772668 kcal Electronic energy + Delta-G solvation = -22773.660834 eV Core-core repulsion = 19426.568437 eV Total energy + Delta-G solvation = -3347.092397 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.56822 -40.77705 -38.41805 -36.05076 -35.51150 -34.36930 -33.30712 -30.51137 -29.63568 -29.43542 -28.34024 -26.54023 -23.74881 -22.29555 -21.39381 -21.16971 -21.01684 -18.60611 -18.00758 -17.36939 -17.28077 -16.84534 -16.34566 -15.91221 -15.80634 -15.31732 -15.11438 -14.79397 -14.31595 -14.25751 -14.15756 -13.85956 -13.49471 -13.20153 -12.98408 -12.89122 -12.68903 -12.47214 -12.42604 -12.26546 -12.04366 -11.90593 -11.85019 -11.78573 -11.64734 -11.35265 -11.30218 -10.78326 -10.32180 -9.19965 -8.29796 -6.14812 -0.55945 0.91374 1.48200 1.57769 1.60092 1.63412 2.02335 2.11967 2.35207 2.81566 2.95420 3.07169 3.72083 3.89298 3.92832 3.98459 4.17801 4.20981 4.42989 4.52389 4.57547 4.64338 4.67393 4.75341 4.82303 4.85945 4.89712 4.95352 5.09902 5.11054 5.19314 5.27422 5.46335 5.51922 5.61413 5.69363 5.86367 6.14995 6.70980 6.98862 7.57786 8.06295 8.74571 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.007119 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.340880 B = 3932.037243 C = 4823.516638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.100 3.900 3 N -0.300 5.300 4 O -0.010 6.010 5 N -0.298 5.298 6 C 0.109 3.891 7 C -0.065 4.065 8 C 0.503 3.497 9 O -0.642 6.642 10 N -0.438 5.438 11 C -0.355 4.355 12 H 0.087 0.913 13 C 0.032 3.968 14 N -0.868 5.868 15 Si 0.954 3.046 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.266 1.266 19 C 0.121 3.879 20 C -0.113 4.113 21 C -0.113 4.113 22 C -0.108 4.108 23 C -0.123 4.123 24 H 0.123 0.877 25 H 0.103 0.897 26 H 0.090 0.910 27 H 0.111 0.889 28 H 0.148 0.852 29 H 0.281 0.719 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -3.802 0.663 4.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 N -0.050 5.050 4 O -0.145 6.145 5 N -0.044 5.044 6 C -0.074 4.074 7 C -0.106 4.106 8 C 0.292 3.708 9 O -0.531 6.531 10 N -0.155 5.155 11 C -0.483 4.483 12 H 0.105 0.895 13 C -0.174 4.174 14 N -0.503 5.503 15 Si 0.778 3.222 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.191 1.191 19 C 0.017 3.983 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.161 4.161 24 H 0.141 0.859 25 H 0.122 0.878 26 H 0.109 0.891 27 H 0.130 0.870 28 H 0.165 0.835 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.860 -2.482 0.303 3.116 hybrid contribution -0.525 -0.520 0.730 1.039 sum -2.385 -3.002 1.033 3.971 Atomic orbital electron populations 1.20743 0.81586 1.05883 1.06354 1.25059 1.01855 0.88008 0.93267 1.79764 0.88640 1.20049 1.16498 1.93264 1.21402 1.14095 1.85736 1.79831 1.18694 0.90848 1.14982 1.24557 0.89527 0.99719 0.93633 1.20552 1.05890 0.85852 0.98300 1.20110 0.78167 0.83378 0.89172 1.90535 1.58133 1.57197 1.47283 1.43493 1.55803 1.11012 1.05212 1.19352 1.27747 1.01234 0.99931 0.89549 1.26082 0.92876 0.96331 1.02139 1.70013 1.13416 1.30916 1.35987 0.85526 0.77938 0.79651 0.79128 1.19223 1.20585 1.19076 1.21832 0.95997 0.95704 0.84753 1.22463 0.95311 0.97380 1.00014 1.22429 0.98503 0.95793 0.98390 1.22220 0.95093 0.96547 1.00684 1.22351 0.98059 0.94885 1.00855 0.85871 0.87829 0.89139 0.87047 0.83492 0.90843 0.92853 0.91277 0.94055 0.91032 0.90555 0.90035 0.91849 0.91904 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.55 10.05 71.23 0.72 -1.83 16 2 C 0.10 3.76 7.19 43.49 0.31 4.07 16 3 N -0.30 -11.82 12.98 -47.16 -0.61 -12.43 16 4 O -0.01 -0.44 13.71 70.18 0.96 0.53 16 5 N -0.30 -13.11 12.98 -47.16 -0.61 -13.72 16 6 C 0.11 4.55 5.68 43.49 0.25 4.79 16 7 C -0.07 -2.73 4.29 29.10 0.12 -2.60 16 8 C 0.50 24.01 7.19 87.66 0.63 24.64 16 9 O -0.64 -34.53 15.38 -3.09 -0.05 -34.58 16 10 N -0.44 -19.74 2.35 -609.37 -1.43 -21.17 16 11 C -0.36 -15.38 6.91 84.04 0.58 -14.80 16 12 H 0.09 3.71 7.18 -2.91 -0.02 3.69 16 13 C 0.03 1.32 3.46 84.93 0.29 1.62 16 14 N -0.87 -36.95 11.70 21.66 0.25 -36.70 16 15 Si 0.95 33.14 29.61 68.60 2.03 35.17 16 16 H -0.27 -9.13 7.11 99.48 0.71 -8.43 16 17 H -0.28 -9.72 7.11 99.48 0.71 -9.02 16 18 H -0.27 -9.26 7.11 99.48 0.71 -8.55 16 19 C 0.12 4.98 3.29 45.72 0.15 5.13 16 20 C -0.11 -4.24 6.42 31.70 0.20 -4.04 16 21 C -0.11 -3.21 6.91 31.91 0.22 -2.99 16 22 C -0.11 -3.01 6.83 31.67 0.22 -2.79 16 23 C -0.12 -4.22 6.25 31.32 0.20 -4.02 16 24 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 25 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.09 3.03 7.79 -2.38 -0.02 3.01 16 27 H 0.11 4.46 8.10 -2.39 -0.02 4.44 16 28 H 0.15 5.94 4.74 -2.39 -0.01 5.92 16 29 H 0.28 11.12 8.32 -92.71 -0.77 10.35 16 30 H 0.05 2.44 6.94 -2.38 -0.02 2.42 16 31 H 0.07 2.92 7.09 -2.39 -0.02 2.90 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 2.19 6.83 -2.39 -0.02 2.18 16 Total: -1.00 -56.15 316.63 5.51 -50.64 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 1.07 Total: 25.09 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 3.89 Total: 7.17 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -2.40 Total: -84.02 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: 0.91 Total: -34.05 kcal Atomic # 14 Polarization: 33.14 SS G_CDS: 2.03 Total: 35.17 kcal Total: -56.15 5.51 -50.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845578422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.412 kcal (2) G-P(sol) polarization free energy of solvation -56.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds