Wall clock time and date at job start Tue Mar 31 2020 02:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29952 * 125.30358 * 2 1 4 4 O 1.41877 * 107.41498 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.38725 * 359.78088 * 4 3 2 6 6 C 1.29952 * 107.41399 * 0.37031 * 5 4 3 7 7 C 1.50701 * 125.30459 * 179.89059 * 6 5 4 8 8 C 1.50702 * 109.47081 * 269.69230 * 7 6 5 9 9 O 1.21285 * 119.99819 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00175 * 180.02562 * 8 7 6 11 11 C 1.46926 * 120.62994 * 359.97438 * 10 8 7 12 12 C 1.53192 * 108.77820 * 233.62963 * 11 10 8 13 13 C 1.53033 * 109.31270 * 305.36633 * 12 11 10 14 14 C 1.53041 * 109.53898 * 61.36218 * 13 12 11 15 15 H 1.09002 * 109.50075 * 58.58639 * 14 13 12 16 16 C 1.50700 * 109.52504 * 178.66881 * 14 13 12 17 17 H 1.08002 * 119.99900 * 359.85530 * 16 14 13 18 18 C 1.37879 * 120.00143 * 179.85648 * 16 14 13 19 19 N 1.31508 * 119.99917 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00097 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47246 * 59.99374 * 20 18 16 22 22 H 1.48501 * 109.47034 * 179.97438 * 20 18 16 23 23 H 1.48510 * 109.46760 * 299.99821 * 20 18 16 24 24 C 1.46927 * 120.63425 * 180.02562 * 10 8 7 25 25 H 1.09001 * 109.46676 * 269.99644 * 1 2 3 26 26 H 1.08998 * 109.47082 * 29.99470 * 1 2 3 27 27 H 1.08994 * 109.47171 * 149.99720 * 1 2 3 28 28 H 1.08997 * 109.46882 * 149.69726 * 7 6 5 29 29 H 1.08989 * 109.47125 * 29.69333 * 7 6 5 30 30 H 1.09006 * 109.58406 * 353.41879 * 11 10 8 31 31 H 1.09002 * 109.59019 * 113.83868 * 11 10 8 32 32 H 1.09000 * 109.49511 * 65.31256 * 12 11 10 33 33 H 1.08995 * 109.49883 * 185.40976 * 12 11 10 34 34 H 1.08999 * 109.45957 * 301.34633 * 13 12 11 35 35 H 1.09004 * 109.45285 * 181.37911 * 13 12 11 36 36 H 0.96998 * 120.00335 * 180.02562 * 19 18 16 37 37 H 1.08997 * 109.58859 * 246.15938 * 24 10 8 38 38 H 1.09001 * 109.58530 * 6.44176 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2580 1.0605 0.0000 4 8 3.6082 0.6247 -0.0006 5 7 3.5710 -0.7935 0.0042 6 6 2.3213 -1.1499 -0.0006 7 6 1.8209 -2.5714 -0.0004 8 6 1.6532 -3.0451 -1.4212 9 8 1.9138 -2.3014 -2.3431 10 7 1.2126 -4.2948 -1.6673 11 6 0.8923 -5.2070 -0.5610 12 6 1.6705 -6.5120 -0.7567 13 6 1.3680 -7.0781 -2.1459 14 6 1.8205 -6.0808 -3.2148 15 1 2.8876 -5.8878 -3.1039 16 6 1.5523 -6.6526 -4.5831 17 1 1.1059 -7.6311 -4.6814 18 6 1.8769 -5.9267 -5.7094 19 7 2.4201 -4.7350 -5.5898 20 14 1.5438 -6.6352 -7.4055 21 1 0.0901 -6.8988 -7.5550 22 1 1.9797 -5.6649 -8.4416 23 1 2.2964 -7.9052 -7.5679 24 6 1.0446 -4.7712 -3.0469 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5138 28 1 0.8611 -2.6186 0.5140 29 1 2.5401 -3.2096 0.5129 30 1 1.1795 -4.7487 0.3854 31 1 -0.1774 -5.4165 -0.5580 32 1 2.7390 -6.3150 -0.6690 33 1 1.3694 -7.2327 0.0034 34 1 0.2961 -7.2516 -2.2418 35 1 1.9015 -8.0194 -2.2784 36 1 2.6481 -4.2241 -6.3821 37 1 -0.0126 -4.9450 -3.2473 38 1 1.4300 -4.0243 -3.7409 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855253138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:32:29 Heat of formation + Delta-G solvation = 46.023670 kcal Electronic energy + Delta-G solvation = -22107.074519 eV Core-core repulsion = 18760.600092 eV Total energy + Delta-G solvation = -3346.474427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50670 -39.55377 -36.90501 -34.54531 -33.59774 -33.25821 -31.90679 -30.18387 -29.19083 -28.75829 -25.14878 -24.65714 -22.53884 -21.91844 -20.97717 -19.77987 -18.39328 -17.15261 -16.85619 -16.23301 -15.79417 -15.36396 -15.11471 -14.59148 -14.30072 -13.91297 -13.81656 -13.54816 -13.50603 -13.06895 -12.83732 -12.68321 -12.55002 -12.09926 -11.91438 -11.74338 -11.61020 -11.07803 -10.95664 -10.84088 -10.64158 -10.58243 -10.48664 -10.30153 -9.98268 -9.47532 -9.19412 -8.98688 -8.48787 -7.89964 -6.04170 -4.13671 0.56564 1.93136 2.66374 2.95681 3.11485 3.29007 3.35670 3.36479 3.56891 3.85163 4.39088 4.50269 4.74197 4.78462 5.02141 5.11040 5.12641 5.15919 5.25891 5.33910 5.38188 5.54972 5.57111 5.71872 5.87890 6.06278 6.21836 6.51611 6.56906 6.75415 6.88974 6.94229 7.02590 7.14216 7.56206 7.79583 7.91692 8.09196 8.31949 8.63696 8.90365 9.52547 11.00967 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.004755 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.056535 B = 5886.905870 C = 6613.803885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.089 3.911 3 N -0.283 5.283 4 O 0.023 5.977 5 N -0.262 5.262 6 C 0.101 3.899 7 C -0.083 4.083 8 C 0.510 3.490 9 O -0.528 6.528 10 N -0.601 5.601 11 C 0.105 3.895 12 C -0.135 4.135 13 C -0.111 4.111 14 C 0.040 3.960 15 H 0.029 0.971 16 C -0.523 4.523 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.112 3.888 25 H 0.095 0.905 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.265 0.735 37 H 0.045 0.955 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 2.756 15.015 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 N -0.029 5.029 4 O -0.118 6.118 5 N -0.005 5.005 6 C -0.083 4.083 7 C -0.124 4.124 8 C 0.294 3.706 9 O -0.404 6.404 10 N -0.334 5.334 11 C -0.018 4.018 12 C -0.174 4.174 13 C -0.149 4.149 14 C 0.021 3.979 15 H 0.047 0.953 16 C -0.562 4.562 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.007 4.007 25 H 0.114 0.886 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.268 4.159 14.396 15.883 hybrid contribution -0.661 -0.899 -0.949 1.465 sum -5.929 3.261 13.447 15.054 Atomic orbital electron populations 1.20571 0.84365 1.05706 1.04385 1.24485 1.00235 0.88895 0.95778 1.79853 0.89208 1.19692 1.14162 1.93368 1.20094 1.13603 1.84686 1.79931 1.17431 0.91059 1.12039 1.23848 0.89944 0.97896 0.96585 1.20480 1.04293 0.88763 0.98913 1.19873 0.78697 0.82779 0.89259 1.90789 1.49788 1.54259 1.45607 1.48503 1.64055 1.11220 1.09594 1.21728 0.99680 0.91280 0.89148 1.21956 1.00288 0.95914 0.99200 1.21626 1.00337 0.99524 0.93382 1.18959 0.95955 0.90038 0.92995 0.95313 1.21026 1.42170 1.02954 0.90030 0.92362 1.25055 0.94688 0.94903 0.99330 1.69862 1.41163 1.10938 1.29776 0.86648 0.78657 0.78839 0.83815 1.20214 1.21247 1.20240 1.22353 0.99102 1.00844 0.78440 0.88621 0.89087 0.88722 0.85940 0.86174 0.91107 0.91519 0.92040 0.92009 0.93086 0.92923 0.92514 0.93698 0.85885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.05 36.00 0.36 -0.41 16 2 C 0.09 1.17 7.19 -82.38 -0.59 0.57 16 3 N -0.28 -4.40 12.98 33.74 0.44 -3.96 16 4 O 0.02 0.41 13.71 12.02 0.16 0.57 16 5 N -0.26 -4.49 12.98 33.74 0.44 -4.05 16 6 C 0.10 1.46 5.68 -82.38 -0.47 0.99 16 7 C -0.08 -0.99 4.21 -29.03 -0.12 -1.12 16 8 C 0.51 9.04 7.69 -10.99 -0.08 8.95 16 9 O -0.53 -12.18 15.45 5.55 0.09 -12.09 16 10 N -0.60 -10.64 2.97 -172.80 -0.51 -11.16 16 11 C 0.11 1.34 6.34 -3.71 -0.02 1.32 16 12 C -0.14 -1.92 6.08 -26.61 -0.16 -2.08 16 13 C -0.11 -2.04 5.11 -26.69 -0.14 -2.18 16 14 C 0.04 0.93 2.25 -91.68 -0.21 0.73 16 15 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 16 C -0.52 -13.75 8.57 -34.44 -0.29 -14.05 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -25.37 11.39 55.43 0.63 -24.74 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 C 0.11 2.55 5.39 -3.74 -0.02 2.53 16 25 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.09 0.75 7.77 -51.93 -0.40 0.35 16 28 H 0.12 0.89 7.58 -51.93 -0.39 0.49 16 29 H 0.12 1.23 7.69 -51.94 -0.40 0.83 16 30 H 0.07 0.64 5.93 -51.93 -0.31 0.33 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.12 3.35 5.12 -51.93 -0.27 3.08 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -33.54 317.63 -5.95 -39.49 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.12 Total: -1.65 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.84 Total: -3.11 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.99 Total: -43.91 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.25 Total: -11.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.54 -5.95 -39.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855253138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.514 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds