Wall clock time and date at job start Tue Mar 31 2020 01:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35317 * 126.12738 * 2 1 4 4 C 1.39871 * 107.91929 * 180.26361 * 3 2 1 5 5 N 1.30845 * 108.20266 * 359.74158 * 4 3 2 6 6 N 1.34948 * 126.12567 * 179.81991 * 2 1 3 7 7 C 1.46503 * 126.03919 * 359.97438 * 6 2 1 8 8 C 1.50694 * 109.47567 * 269.72279 * 7 6 2 9 9 O 1.21275 * 119.99961 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99872 * 179.97438 * 8 7 6 11 11 C 1.47018 * 125.64981 * 0.02817 * 10 8 7 12 12 C 1.54325 * 107.40412 * 178.82520 * 11 10 8 13 13 C 1.55405 * 102.82616 * 337.97548 * 12 11 10 14 14 O 1.42894 * 110.89418 * 277.26698 * 13 12 11 15 15 C 1.50704 * 111.07313 * 153.48318 * 13 12 11 16 16 H 1.07997 * 120.00130 * 247.66801 * 15 13 12 17 17 C 1.37876 * 119.99522 * 67.66152 * 15 13 12 18 18 N 1.31520 * 120.00267 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 120.00088 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46937 * 90.00003 * 19 17 15 21 21 H 1.48496 * 109.47312 * 210.00573 * 19 17 15 22 22 H 1.48506 * 109.46755 * 330.00579 * 19 17 15 23 23 C 1.47426 * 125.64500 * 179.97438 * 10 8 7 24 24 H 1.08999 * 109.47213 * 270.18269 * 1 2 3 25 25 H 1.09005 * 109.47526 * 30.18220 * 1 2 3 26 26 H 1.09004 * 109.47259 * 150.18529 * 1 2 3 27 27 H 1.07994 * 126.04107 * 0.02562 * 3 2 1 28 28 H 1.07995 * 125.90072 * 179.71506 * 4 3 2 29 29 H 1.08997 * 109.46815 * 149.71647 * 7 6 2 30 30 H 1.09007 * 109.46543 * 29.72587 * 7 6 2 31 31 H 1.09002 * 109.88241 * 298.32048 * 11 10 8 32 32 H 1.09000 * 109.88049 * 59.33177 * 11 10 8 33 33 H 1.09000 * 110.72188 * 96.24097 * 12 11 10 34 34 H 1.09002 * 110.72265 * 219.52294 * 12 11 10 35 35 H 0.96698 * 114.00346 * 292.23261 * 14 13 12 36 36 H 0.96993 * 120.00181 * 179.97438 * 18 17 15 37 37 H 1.08999 * 110.36956 * 323.01018 * 23 10 8 38 38 H 1.09003 * 110.36599 * 85.32922 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6559 -0.0061 5 7 3.6333 -0.6525 -0.0041 6 7 2.3025 -1.0900 0.0034 7 6 1.8538 -2.4846 0.0083 8 6 1.7070 -2.9602 1.4307 9 8 1.9534 -2.2084 2.3499 10 7 1.3019 -4.2209 1.6813 11 6 0.9720 -5.2326 0.6668 12 6 0.5895 -6.5277 1.4137 13 6 1.2684 -6.3404 2.7990 14 8 2.6460 -6.7162 2.7464 15 6 0.5408 -7.1142 3.8681 16 1 0.0089 -6.5890 4.6476 17 6 0.5541 -8.4928 3.8509 18 7 1.2022 -9.1325 2.9019 19 14 -0.3483 -9.4522 5.1756 20 1 -1.7440 -9.7078 4.7377 21 1 0.3427 -10.7460 5.4074 22 1 -0.3609 -8.6652 6.4350 23 6 1.1173 -4.8143 3.0182 24 1 -0.3633 0.0033 1.0276 25 1 -0.3634 0.8884 -0.5167 26 1 -0.3634 -0.8917 -0.5110 27 1 1.9741 2.1210 0.0004 28 1 4.5083 1.2890 -0.0120 29 1 2.5872 -3.1040 -0.5080 30 1 0.8928 -2.5588 -0.5007 31 1 0.1315 -4.8911 0.0625 32 1 1.8372 -5.4141 0.0293 33 1 -0.4923 -6.6051 1.5223 34 1 0.9902 -7.4017 0.9003 35 1 2.7906 -7.6626 2.6106 36 1 1.2119 -10.1023 2.8901 37 1 1.8835 -4.4517 3.7034 38 1 0.1237 -4.5828 3.4021 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862099522.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:23 Heat of formation + Delta-G solvation = -2.063793 kcal Electronic energy + Delta-G solvation = -21986.292769 eV Core-core repulsion = 18637.733112 eV Total energy + Delta-G solvation = -3348.559656 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 5.52 seconds Orbital eigenvalues (eV) -41.22482 -39.45629 -37.31669 -34.42054 -33.39231 -32.20896 -32.04058 -30.05879 -28.61336 -27.26578 -26.92576 -24.94732 -22.53191 -21.14977 -20.31838 -19.64986 -18.77210 -17.41871 -16.98893 -16.64948 -15.57551 -15.14759 -15.04915 -14.71168 -14.23510 -14.05885 -13.83937 -13.57905 -13.14035 -12.93350 -12.80971 -12.51312 -12.23627 -12.07114 -12.01633 -11.72031 -11.44078 -11.40302 -10.94632 -10.70694 -10.55068 -10.53131 -10.13814 -9.87078 -9.51551 -9.09038 -8.75499 -8.42034 -8.29383 -8.14103 -6.37009 -4.45084 1.87987 2.43536 2.82727 2.93220 3.14747 3.23081 3.26860 3.46402 4.20407 4.52698 4.62181 4.67552 4.91475 4.93567 5.02019 5.18513 5.39720 5.40760 5.61119 5.66325 5.70641 5.73877 5.78572 5.89102 6.13828 6.17381 6.33148 6.53285 6.71154 6.76351 6.82831 7.02869 7.19868 7.23353 7.66307 7.79874 7.89341 7.95314 8.42439 8.57490 9.24312 9.40816 10.70751 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.041216 B = 0.003787 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.181925 B = 7391.571802 C = 7493.415823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.093 3.907 3 C -0.279 4.279 4 C 0.045 3.955 5 N -0.288 5.288 6 N -0.352 5.352 7 C 0.117 3.883 8 C 0.507 3.493 9 O -0.535 6.535 10 N -0.603 5.603 11 C 0.094 3.906 12 C -0.139 4.139 13 C 0.249 3.751 14 O -0.584 6.584 15 C -0.537 4.537 16 H 0.066 0.934 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C 0.121 3.879 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.145 0.855 28 H 0.181 0.819 29 H 0.122 0.878 30 H 0.118 0.882 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.386 0.614 36 H 0.270 0.730 37 H 0.071 0.929 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 11.646 -9.437 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.034 4.034 3 C -0.308 4.308 4 C -0.141 4.141 5 N -0.108 5.108 6 N -0.134 5.134 7 C -0.008 4.008 8 C 0.292 3.708 9 O -0.413 6.413 10 N -0.337 5.337 11 C -0.028 4.028 12 C -0.177 4.177 13 C 0.208 3.792 14 O -0.394 6.394 15 C -0.575 4.575 16 H 0.084 0.916 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.196 1.196 23 C -0.001 4.001 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.087 0.913 27 H 0.163 0.837 28 H 0.198 0.802 29 H 0.140 0.860 30 H 0.136 0.864 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.238 0.762 36 H 0.080 0.920 37 H 0.090 0.910 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.051 11.376 -8.938 14.612 hybrid contribution -1.033 -0.608 0.527 1.309 sum -3.083 10.768 -8.411 14.008 Atomic orbital electron populations 1.20467 0.87590 1.03448 1.03659 1.21063 0.94617 0.87311 1.00413 1.21141 0.92356 0.98648 1.18693 1.23789 0.98060 0.92198 1.00066 1.77398 0.96324 1.13130 1.23927 1.47979 1.04057 1.04587 1.56764 1.21445 1.02928 0.79865 0.96585 1.20217 0.78234 0.81488 0.90828 1.90728 1.50386 1.54173 1.45980 1.48592 1.64745 1.10288 1.10054 1.22252 0.98897 0.90386 0.91295 1.23249 1.01343 0.94057 0.99077 1.19632 0.80607 0.87844 0.91078 1.86108 1.25938 1.31522 1.95875 1.21472 1.32880 0.91485 1.11671 0.91595 1.24992 0.94661 0.97568 0.95735 1.69554 1.42335 1.09119 1.32713 0.86381 0.79497 0.79142 0.81782 1.20412 1.20953 1.19637 1.22425 1.00681 0.94157 0.82791 0.89933 0.89639 0.91347 0.83738 0.80158 0.85975 0.86447 0.92642 0.92101 0.91204 0.89694 0.76161 0.91991 0.91021 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.90 10.12 36.00 0.36 -0.54 16 2 C 0.09 1.26 6.93 -82.27 -0.57 0.69 16 3 C -0.28 -3.56 10.72 -40.01 -0.43 -3.99 16 4 C 0.05 0.62 12.03 -17.36 -0.21 0.41 16 5 N -0.29 -4.86 12.58 30.63 0.39 -4.47 16 6 N -0.35 -5.49 3.10 -58.31 -0.18 -5.68 16 7 C 0.12 1.66 5.92 -5.19 -0.03 1.63 16 8 C 0.51 9.44 7.92 -10.99 -0.09 9.35 16 9 O -0.54 -12.16 16.69 5.56 0.09 -12.07 16 10 N -0.60 -11.42 3.33 -170.52 -0.57 -11.99 16 11 C 0.09 1.56 6.48 -3.07 -0.02 1.54 16 12 C -0.14 -2.79 5.66 -24.76 -0.14 -2.93 16 13 C 0.25 5.84 0.89 -89.49 -0.08 5.76 16 14 O -0.58 -14.79 13.18 -35.23 -0.46 -15.25 16 15 C -0.54 -13.59 8.25 -34.44 -0.28 -13.88 16 16 H 0.07 1.66 7.77 -52.49 -0.41 1.26 16 17 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 18 N -0.90 -22.49 10.79 55.43 0.60 -21.89 16 19 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 20 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 C 0.12 2.64 6.08 -2.53 -0.02 2.63 16 24 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.57 7.08 -51.93 -0.37 0.20 16 27 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.12 1.59 8.14 -51.93 -0.42 1.16 16 30 H 0.12 1.21 7.04 -51.93 -0.37 0.84 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.39 8.03 -51.93 -0.42 0.98 16 34 H 0.08 1.79 7.86 -51.93 -0.41 1.39 16 35 H 0.39 9.84 6.93 45.56 0.32 10.15 16 36 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.07 1.71 8.04 -51.93 -0.42 1.29 16 38 H 0.07 1.52 8.01 -51.93 -0.42 1.10 16 LS Contribution 322.69 15.07 4.86 4.86 Total: -1.00 -31.54 322.69 -6.47 -38.01 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -4.58 Total: 11.40 kcal Atomic # 6 Polarization: 3.99 SS G_CDS: -1.60 Total: 2.39 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.24 Total: -44.03 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.37 Total: -27.32 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.54 -6.47 -38.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862099522.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.948 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.52 seconds