Wall clock time and date at job start Tue Mar 31 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34225 * 117.00391 * 2 1 4 4 O 1.20826 * 119.99897 * 359.97438 * 3 2 1 5 5 C 1.50695 * 120.00245 * 179.97438 * 3 2 1 6 6 C 1.53010 * 109.47105 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.46845 * 179.97438 * 6 5 3 8 8 C 1.36933 * 120.00153 * 275.63162 * 7 6 5 9 9 H 1.07993 * 120.00261 * 34.01699 * 8 7 6 10 10 C 1.38810 * 119.99929 * 214.01374 * 8 7 6 11 11 N 1.31620 * 119.99986 * 22.93869 * 10 8 7 12 12 Si 1.86801 * 120.00105 * 202.93356 * 10 8 7 13 13 H 1.48504 * 109.46950 * 60.00536 * 12 10 8 14 14 H 1.48500 * 109.47052 * 180.02562 * 12 10 8 15 15 H 1.48494 * 109.46992 * 300.00103 * 12 10 8 16 16 C 1.46500 * 119.99646 * 95.63270 * 7 6 5 17 17 C 1.50694 * 109.47541 * 269.99789 * 16 7 6 18 18 C 1.38595 * 120.80146 * 89.99840 * 17 16 7 19 19 N 1.32334 * 119.10684 * 179.72703 * 18 17 16 20 20 C 1.31797 * 120.81854 * 0.28026 * 19 18 17 21 21 C 1.50701 * 119.12689 * 180.02562 * 20 19 18 22 22 N 1.31796 * 121.75296 * 0.02562 * 20 19 18 23 23 C 1.32335 * 120.81815 * 359.97438 * 22 20 19 24 24 H 1.08998 * 109.46868 * 300.00449 * 1 2 3 25 25 H 1.09002 * 109.47049 * 60.00218 * 1 2 3 26 26 H 1.08995 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47008 * 60.00196 * 5 3 2 28 28 H 1.09003 * 109.47302 * 299.99576 * 5 3 2 29 29 H 1.09001 * 109.46852 * 60.00316 * 6 5 3 30 30 H 1.08995 * 109.46794 * 300.00364 * 6 5 3 31 31 H 0.97006 * 120.00029 * 179.97438 * 11 10 8 32 32 H 1.09001 * 109.47052 * 149.99753 * 16 7 6 33 33 H 1.09003 * 109.47602 * 30.00011 * 16 7 6 34 34 H 1.08004 * 120.45009 * 359.97438 * 18 17 16 35 35 H 1.08995 * 109.47321 * 89.99529 * 21 20 19 36 36 H 1.08998 * 109.46869 * 209.99882 * 21 20 19 37 37 H 1.09000 * 109.46649 * 329.99573 * 21 20 19 38 38 H 1.07998 * 120.44703 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7420 -0.0002 7 7 5.4632 2.8186 0.0010 8 6 6.1520 2.7391 1.1818 9 1 5.7822 2.1150 1.9817 10 6 7.3258 3.4607 1.3505 11 7 7.5514 4.5309 0.6183 12 14 8.5851 2.9130 2.6169 13 1 9.0511 1.5413 2.2903 14 1 9.7406 3.8457 2.6013 15 1 7.9644 2.9170 3.9659 16 6 6.1892 2.9803 -1.2612 17 6 6.5122 1.6237 -1.8323 18 6 5.6322 0.9887 -2.6944 19 7 5.9521 -0.1998 -3.1805 20 6 7.0878 -0.7811 -2.8499 21 6 7.4141 -2.1347 -3.4264 22 7 7.9459 -0.2101 -2.0284 23 6 7.6937 0.9780 -1.5031 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.9564 0.7805 -0.8892 28 1 3.9557 0.7809 0.8909 29 1 3.6101 3.2367 0.8894 30 1 3.6108 3.2355 -0.8906 31 1 8.3714 5.0354 0.7365 32 1 7.1141 3.5281 -1.0807 33 1 5.5709 3.5340 -1.9677 34 1 4.6997 1.4593 -2.9690 35 1 7.9562 -2.0094 -4.3636 36 1 8.0315 -2.6908 -2.7210 37 1 6.4903 -2.6829 -3.6115 38 1 8.4009 1.4402 -0.8303 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709132.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:28 Heat of formation + Delta-G solvation = -38.668794 kcal Electronic energy + Delta-G solvation = -22023.620053 eV Core-core repulsion = 18673.473084 eV Total energy + Delta-G solvation = -3350.146968 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91134 -41.45299 -38.19760 -37.40678 -34.59031 -34.35663 -33.99209 -31.77949 -30.02927 -28.54998 -26.97628 -25.75143 -25.43922 -23.44380 -22.35502 -21.51191 -18.96461 -18.56054 -18.42106 -17.69079 -17.55840 -17.36852 -16.68099 -16.13583 -15.69751 -15.40415 -15.26480 -14.74188 -14.44576 -14.35071 -14.06642 -13.72387 -13.52571 -13.38562 -13.15834 -13.12388 -12.86768 -12.73229 -12.53161 -12.25864 -12.06871 -11.89421 -11.77285 -11.67573 -11.62841 -11.53479 -10.61602 -10.07922 -10.00721 -8.72788 -7.90783 -5.47791 0.08253 0.18849 1.16090 1.46481 1.51736 1.56017 1.77998 2.48966 2.84501 3.17206 3.21030 3.29337 3.66403 3.85903 3.97076 4.10385 4.13707 4.16433 4.31545 4.33984 4.36710 4.58261 4.62548 4.68906 4.70981 4.78010 4.90426 4.95058 5.10730 5.20748 5.25590 5.38149 5.58640 5.65778 5.71320 6.11353 6.39548 6.72705 7.08530 7.21251 7.73828 8.25276 9.07566 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.010479 B = 0.007690 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.485929 B = 3640.446874 C = 5549.294774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.369 6.369 3 C 0.472 3.528 4 O -0.534 6.534 5 C -0.122 4.122 6 C 0.164 3.836 7 N -0.581 5.581 8 C -0.270 4.270 9 H 0.058 0.942 10 C -0.020 4.020 11 N -0.905 5.905 12 Si 0.943 3.057 13 H -0.279 1.279 14 H -0.290 1.290 15 H -0.279 1.279 16 C 0.183 3.817 17 C -0.183 4.183 18 C 0.144 3.856 19 N -0.527 5.527 20 C 0.278 3.722 21 C -0.075 4.075 22 N -0.537 5.537 23 C 0.151 3.849 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.131 0.869 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.256 0.744 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.178 0.822 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 -10.394 -6.010 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.316 3.684 4 O -0.424 6.424 5 C -0.162 4.162 6 C 0.037 3.963 7 N -0.300 5.300 8 C -0.400 4.400 9 H 0.076 0.924 10 C -0.219 4.219 11 N -0.548 5.548 12 Si 0.771 3.229 13 H -0.205 1.205 14 H -0.216 1.216 15 H -0.205 1.205 16 C 0.055 3.945 17 C -0.190 4.190 18 C -0.022 4.022 19 N -0.242 5.242 20 C 0.010 3.990 21 C -0.133 4.133 22 N -0.252 5.252 23 C -0.015 4.015 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.149 0.851 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.195 0.805 35 H 0.114 0.886 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.456 -10.841 -6.359 14.129 hybrid contribution 0.386 1.043 1.325 1.730 sum -6.070 -9.797 -5.034 12.576 Atomic orbital electron populations 1.23550 0.74874 1.05638 1.02567 1.86537 1.25137 1.33088 1.83791 1.24028 0.92270 0.81114 0.70985 1.90626 1.67843 1.37150 1.46805 1.22087 0.85880 1.03042 1.05191 1.20630 0.83953 0.91182 1.00519 1.43891 0.99972 1.83905 1.02187 1.19146 1.05918 1.21206 0.93732 0.92397 1.25558 1.01897 0.94617 0.99786 1.70052 1.26188 1.15098 1.43423 0.85731 0.79349 0.77836 0.79942 1.20480 1.21636 1.20512 1.19876 0.99935 0.89076 0.85566 1.22731 0.95791 1.02656 0.97827 1.23290 0.98504 0.89758 0.90698 1.68259 1.19405 1.10926 1.25563 1.23888 0.86002 0.98127 0.90943 1.20583 1.03718 0.87556 1.01422 1.68250 1.34332 1.11278 1.11299 1.23011 0.95317 0.89552 0.93634 0.92081 0.91753 0.85051 0.88306 0.88573 0.94117 0.92412 0.93411 0.89353 0.92674 0.80511 0.88579 0.89377 0.88711 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.30 10.56 -51.37 -0.54 -10.84 16 3 C 0.47 15.27 7.96 71.23 0.57 15.84 16 4 O -0.53 -19.59 15.73 21.97 0.35 -19.24 16 5 C -0.12 -4.10 6.10 29.85 0.18 -3.92 16 6 C 0.16 6.42 5.01 86.38 0.43 6.86 16 7 N -0.58 -25.86 2.44 -706.35 -1.73 -27.58 16 8 C -0.27 -13.46 9.48 84.03 0.80 -12.66 16 9 H 0.06 2.91 7.93 -2.91 -0.02 2.89 16 10 C -0.02 -1.01 4.95 84.86 0.42 -0.59 16 11 N -0.90 -48.05 11.31 21.65 0.24 -47.81 16 12 Si 0.94 41.68 29.61 68.60 2.03 43.71 16 13 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 14 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 16 C 0.18 7.60 5.51 85.63 0.47 8.07 16 17 C -0.18 -6.86 5.47 -19.69 -0.11 -6.96 16 18 C 0.14 4.74 9.21 84.70 0.78 5.52 16 19 N -0.53 -17.26 10.33 -187.84 -1.94 -19.20 16 20 C 0.28 8.99 7.64 138.75 1.06 10.05 16 21 C -0.07 -1.66 10.32 71.24 0.74 -0.93 16 22 N -0.54 -19.75 10.33 -187.84 -1.94 -21.69 16 23 C 0.15 5.91 11.01 84.70 0.93 6.84 16 24 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 25 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 26 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.10 3.22 6.16 -2.39 -0.01 3.21 16 28 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 29 H 0.04 1.74 8.04 -2.39 -0.02 1.73 16 30 H 0.06 2.16 7.79 -2.39 -0.02 2.14 16 31 H 0.26 13.28 8.31 -92.70 -0.77 12.51 16 32 H 0.09 4.25 5.28 -2.39 -0.01 4.24 16 33 H 0.05 2.11 7.82 -2.39 -0.02 2.10 16 34 H 0.18 4.94 8.02 -2.91 -0.02 4.91 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.15 6.15 8.06 -2.91 -0.02 6.13 16 Total: -1.00 -60.42 329.26 5.00 -55.42 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.06 Total: 17.39 kcal Atomic # 6 Polarization: 22.37 SS G_CDS: 7.47 Total: 29.84 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -5.36 Total: -116.28 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.20 Total: -30.09 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -60.42 5.00 -55.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709132.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.754 kcal (2) G-P(sol) polarization free energy of solvation -60.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds