Wall clock time and date at job start Tue Mar 31 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99571 * 2 1 4 4 O 1.20829 * 120.00259 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00051 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47235 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47084 * 180.02562 * 6 5 3 8 8 C 1.36941 * 120.00106 * 269.70530 * 7 6 5 9 9 H 1.08000 * 119.99721 * 322.03957 * 8 7 6 10 10 C 1.38804 * 120.00123 * 142.03971 * 8 7 6 11 11 N 1.31615 * 120.00129 * 157.07416 * 10 8 7 12 12 Si 1.86801 * 120.00249 * 337.07234 * 10 8 7 13 13 H 1.48509 * 109.46990 * 95.69712 * 12 10 8 14 14 H 1.48501 * 109.47306 * 215.69966 * 12 10 8 15 15 H 1.48501 * 109.47263 * 335.70512 * 12 10 8 16 16 C 1.46500 * 120.00149 * 89.69926 * 7 6 5 17 17 C 1.50704 * 109.47015 * 90.00036 * 16 7 6 18 18 C 1.38622 * 120.44615 * 94.99791 * 17 16 7 19 19 C 1.38571 * 118.40004 * 179.70516 * 18 17 16 20 20 N 1.32356 * 119.10201 * 0.27129 * 19 18 17 21 21 C 1.31774 * 120.82182 * 0.02562 * 20 19 18 22 22 C 1.50695 * 119.12104 * 180.02562 * 21 20 19 23 23 N 1.31807 * 121.75517 * 359.97438 * 21 20 19 24 24 H 1.09007 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47579 * 299.99835 * 1 2 3 26 26 H 1.08998 * 109.47514 * 60.00119 * 1 2 3 27 27 H 1.09001 * 109.46728 * 60.00302 * 5 3 2 28 28 H 1.09000 * 109.46909 * 300.00598 * 5 3 2 29 29 H 1.08991 * 109.47145 * 60.00361 * 6 5 3 30 30 H 1.08998 * 109.46777 * 299.99801 * 6 5 3 31 31 H 0.97001 * 120.00730 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.47309 * 330.00649 * 16 7 6 33 33 H 1.09003 * 109.47572 * 209.99732 * 16 7 6 34 34 H 1.08003 * 120.80265 * 359.97438 * 18 17 16 35 35 H 1.08000 * 120.45046 * 180.25751 * 19 18 17 36 36 H 1.09008 * 109.46629 * 90.00536 * 22 21 20 37 37 H 1.09008 * 109.47275 * 209.99740 * 22 21 20 38 38 H 1.08990 * 109.47865 * 330.00222 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 0.0006 6 6 4.0000 2.7423 0.0011 7 7 5.4629 2.8190 0.0011 8 6 6.1465 2.8605 1.1869 9 1 5.7480 3.4198 2.0206 10 6 7.3514 2.1840 1.3176 11 7 8.2194 2.5567 2.2340 12 14 7.7410 0.7443 0.1928 13 1 8.5557 1.2189 -0.9545 14 1 8.5017 -0.2829 0.9489 15 1 6.4753 0.1525 -0.3102 16 6 6.1947 2.8512 -1.2677 17 6 6.3712 4.2812 -1.7096 18 6 7.5338 4.9721 -1.4052 19 6 7.6538 6.2830 -1.8378 20 7 6.6589 6.8301 -2.5180 21 6 5.5655 6.1444 -2.7839 22 6 4.4567 6.8050 -3.5618 23 7 5.4163 4.8959 -2.3886 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.9563 0.7808 -0.8892 28 1 3.9556 0.7811 0.8908 29 1 3.6099 3.2361 0.8910 30 1 3.6105 3.2365 -0.8889 31 1 9.0613 2.0837 2.3256 32 1 5.6336 2.3036 -2.0248 33 1 7.1728 2.3887 -1.1349 34 1 8.3288 4.4986 -0.8481 35 1 8.5470 6.8508 -1.6226 36 1 4.6093 6.6350 -4.6276 37 1 3.4987 6.3813 -3.2599 38 1 4.4597 7.8762 -3.3606 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877710940.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:50:32 Heat of formation + Delta-G solvation = -35.771159 kcal Electronic energy + Delta-G solvation = -21829.296777 eV Core-core repulsion = 18479.275459 eV Total energy + Delta-G solvation = -3350.021317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.92805 -41.44230 -38.37473 -37.42829 -34.80172 -34.23861 -34.09150 -32.07272 -29.51054 -28.77249 -28.32585 -26.31653 -24.46582 -23.50664 -22.65642 -21.32574 -19.20869 -18.58813 -18.45121 -17.63823 -17.50092 -17.19500 -16.96438 -16.21909 -16.05531 -15.65172 -15.30027 -14.93457 -14.56895 -14.39814 -14.17780 -14.05237 -13.62079 -13.42688 -13.35778 -13.18668 -12.95744 -12.78646 -12.58768 -12.18346 -11.94023 -11.80242 -11.72443 -11.62332 -11.53101 -11.44983 -10.69875 -10.27850 -10.21831 -8.97347 -8.22740 -5.66768 0.02974 0.15418 1.19351 1.33343 1.47607 1.56810 1.78697 2.40239 2.71951 3.06761 3.08998 3.22550 3.35593 3.68489 3.94250 4.13447 4.15057 4.23218 4.30084 4.34260 4.35469 4.41984 4.57389 4.62054 4.66938 4.67861 4.73453 4.75015 4.93595 5.06599 5.09290 5.16962 5.40352 5.57990 5.87007 6.11292 6.17243 6.73897 6.84813 7.20131 7.50025 7.92698 8.95559 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.011947 B = 0.006996 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.089061 B = 4001.103424 C = 5855.663823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.473 3.527 4 O -0.538 6.538 5 C -0.128 4.128 6 C 0.170 3.830 7 N -0.591 5.591 8 C -0.271 4.271 9 H 0.036 0.964 10 C 0.001 3.999 11 N -0.934 5.934 12 Si 0.924 3.076 13 H -0.268 1.268 14 H -0.305 1.305 15 H -0.239 1.239 16 C 0.176 3.824 17 C 0.161 3.839 18 C -0.227 4.227 19 C 0.147 3.853 20 N -0.541 5.541 21 C 0.291 3.709 22 C -0.075 4.075 23 N -0.528 5.528 24 H 0.132 0.868 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.105 0.895 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.267 0.733 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.138 0.862 35 H 0.196 0.804 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.003 -1.696 -10.698 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.317 3.683 4 O -0.428 6.428 5 C -0.168 4.168 6 C 0.044 3.956 7 N -0.312 5.312 8 C -0.401 4.401 9 H 0.054 0.946 10 C -0.197 4.197 11 N -0.575 5.575 12 Si 0.750 3.250 13 H -0.195 1.195 14 H -0.234 1.234 15 H -0.162 1.162 16 C 0.050 3.950 17 C 0.012 3.988 18 C -0.250 4.250 19 C -0.018 4.018 20 N -0.257 5.257 21 C 0.024 3.976 22 C -0.134 4.134 23 N -0.245 5.245 24 H 0.150 0.850 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.132 0.868 28 H 0.123 0.877 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.213 0.787 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.842 -1.021 -11.097 14.225 hybrid contribution 1.181 -0.880 0.842 1.697 sum -7.661 -1.901 -10.255 12.941 Atomic orbital electron populations 1.23547 0.74961 1.05641 1.02484 1.86534 1.25040 1.32960 1.83808 1.24046 0.92282 0.81107 0.70859 1.90627 1.67918 1.37279 1.46979 1.22096 0.85962 1.02373 1.06362 1.20646 0.82251 0.92118 1.00560 1.44013 1.01672 1.84633 1.00885 1.18517 1.04140 1.26515 0.90883 0.94609 1.25981 0.96200 0.99399 0.98150 1.69995 1.08302 1.40938 1.38274 0.86162 0.79409 0.80773 0.78608 1.19519 1.23374 1.16224 1.20395 0.97726 0.88568 0.88280 1.22934 0.88356 0.99507 0.87968 1.22854 1.00917 0.98023 1.03185 1.23603 0.97234 0.91778 0.89186 1.68287 1.02361 1.38801 1.16207 1.23987 0.93606 0.87129 0.92912 1.20599 0.93044 1.00556 0.99164 1.68146 1.31379 1.11556 1.13379 0.84959 0.92231 0.91805 0.86759 0.87697 0.94167 0.91955 0.92366 0.89456 0.91628 0.84454 0.78748 0.88091 0.89618 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -10.10 10.57 -51.43 -0.54 -10.64 16 3 C 0.47 15.34 7.96 71.24 0.57 15.91 16 4 O -0.54 -20.03 15.73 21.95 0.35 -19.68 16 5 C -0.13 -4.31 6.13 29.85 0.18 -4.12 16 6 C 0.17 6.79 4.96 86.38 0.43 7.22 16 7 N -0.59 -26.32 2.05 -706.36 -1.45 -27.76 16 8 C -0.27 -14.39 9.90 84.03 0.83 -13.55 16 9 H 0.04 2.19 8.06 -2.91 -0.02 2.17 16 10 C 0.00 0.08 5.29 84.86 0.45 0.53 16 11 N -0.93 -53.89 13.97 21.65 0.30 -53.59 16 12 Si 0.92 40.40 25.10 68.60 1.72 42.12 16 13 H -0.27 -11.07 6.68 99.48 0.66 -10.40 16 14 H -0.31 -13.81 7.11 99.48 0.71 -13.11 16 15 H -0.24 -9.50 7.11 99.48 0.71 -8.79 16 16 C 0.18 7.09 4.87 85.63 0.42 7.51 16 17 C 0.16 6.39 6.41 42.58 0.27 6.67 16 18 C -0.23 -8.60 9.84 22.44 0.22 -8.38 16 19 C 0.15 4.80 11.30 84.69 0.96 5.76 16 20 N -0.54 -18.23 10.33 -187.86 -1.94 -20.17 16 21 C 0.29 9.79 7.64 138.75 1.06 10.85 16 22 C -0.08 -1.79 10.32 71.23 0.74 -1.06 16 23 N -0.53 -19.92 10.27 -176.02 -1.81 -21.72 16 24 H 0.13 1.61 8.14 -2.38 -0.02 1.59 16 25 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 26 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 27 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 28 H 0.10 3.65 8.14 -2.39 -0.02 3.64 16 29 H 0.04 1.76 7.99 -2.39 -0.02 1.74 16 30 H 0.06 2.46 8.03 -2.39 -0.02 2.44 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.09 3.08 8.07 -2.39 -0.02 3.06 16 33 H 0.07 2.74 3.30 -2.39 -0.01 2.73 16 34 H 0.14 5.36 8.06 -2.91 -0.02 5.34 16 35 H 0.20 4.80 8.06 -2.91 -0.02 4.77 16 36 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 38 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -66.77 329.09 4.96 -61.81 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 1.02 Total: 20.59 kcal Atomic # 6 Polarization: 21.72 SS G_CDS: 7.32 Total: 29.04 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -4.90 Total: -123.25 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.20 Total: -30.32 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.72 Total: 42.12 kcal Total: -66.77 4.96 -61.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877710940.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.036 kcal (2) G-P(sol) polarization free energy of solvation -66.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds