Wall clock time and date at job start Tue Mar 31 2020 02:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35448 * 128.00901 * 2 1 4 4 O 1.34040 * 106.44733 * 180.02562 * 3 2 1 5 5 N 1.20915 * 111.56837 * 359.71074 * 4 3 2 6 6 C 1.30172 * 111.60261 * 0.48082 * 5 4 3 7 7 C 1.50703 * 126.80188 * 179.79654 * 6 5 4 8 8 N 1.46897 * 109.47390 * 269.68873 * 7 6 5 9 9 C 1.46905 * 110.99826 * 169.99874 * 8 7 6 10 10 C 1.53243 * 109.33672 * 187.25448 * 9 8 7 11 11 N 1.47076 * 108.52280 * 306.17389 * 10 9 8 12 12 C 1.34777 * 120.88062 * 231.18540 * 11 10 9 13 13 O 1.21687 * 120.00006 * 5.22924 * 12 11 10 14 14 C 1.46376 * 120.00313 * 185.22734 * 12 11 10 15 15 H 1.07997 * 119.99552 * 354.99977 * 14 12 11 16 16 C 1.40044 * 120.00321 * 175.00114 * 14 12 11 17 17 N 1.30673 * 119.99689 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00192 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47087 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47042 * 299.99758 * 18 16 14 21 21 H 1.48503 * 109.47023 * 59.99987 * 18 16 14 22 22 C 1.47077 * 118.23996 * 51.45605 * 11 10 9 23 23 C 1.46898 * 111.00153 * 294.30172 * 8 7 6 24 24 H 1.08994 * 109.46787 * 269.95934 * 1 2 3 25 25 H 1.08996 * 109.46788 * 29.96099 * 1 2 3 26 26 H 1.08999 * 109.47002 * 149.95599 * 1 2 3 27 27 H 1.08000 * 126.77584 * 0.05102 * 3 2 1 28 28 H 1.09003 * 109.46865 * 149.68895 * 7 6 5 29 29 H 1.09003 * 109.47067 * 29.69471 * 7 6 5 30 30 H 1.08994 * 109.49159 * 67.30254 * 9 8 7 31 31 H 1.08996 * 109.49043 * 307.21370 * 9 8 7 32 32 H 1.08999 * 109.62657 * 186.46027 * 10 9 8 33 33 H 1.09002 * 109.78902 * 65.97743 * 10 9 8 34 34 H 0.97000 * 120.00181 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.62715 * 68.25082 * 22 11 10 36 36 H 1.09000 * 109.63081 * 188.83321 * 22 11 10 37 37 H 1.09001 * 109.49368 * 292.70476 * 23 8 7 38 38 H 1.08999 * 109.49029 * 52.75792 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3411 1.0672 0.0000 4 8 3.5877 0.5746 -0.0006 5 7 3.5878 -0.6345 0.0048 6 6 2.3776 -1.1140 -0.0006 7 6 1.9827 -2.5683 -0.0009 8 7 1.8539 -3.0405 -1.3859 9 6 1.7041 -4.5012 -1.4324 10 6 1.7551 -4.9704 -2.8903 11 7 0.7522 -4.2175 -3.6588 12 6 -0.1433 -4.8551 -4.4385 13 8 -0.1917 -6.0710 -4.4405 14 6 -1.0579 -4.0850 -5.2829 15 1 -1.0708 -3.0068 -5.2216 16 6 -1.9162 -4.7462 -6.1703 17 7 -1.9001 -6.0507 -6.2448 18 14 -3.0827 -3.7633 -7.2484 19 1 -3.8774 -4.6916 -8.0924 20 1 -3.9973 -2.9674 -6.3909 21 1 -2.3006 -2.8497 -8.1195 22 6 0.7564 -2.7502 -3.5586 23 6 0.7409 -2.3687 -2.0698 24 1 -0.3633 -0.0007 1.0276 25 1 -0.3633 0.8903 -0.5132 26 1 -0.3633 -0.8896 -0.5145 27 1 2.0577 2.1094 0.0008 28 1 1.0288 -2.6859 0.5133 29 1 2.7466 -3.1523 0.5126 30 1 0.7472 -4.7827 -0.9930 31 1 2.5138 -4.9678 -0.8715 32 1 1.5305 -6.0358 -2.9401 33 1 2.7469 -4.7857 -3.3029 34 1 -2.4943 -6.5087 -6.8597 35 1 1.6545 -2.3534 -4.0321 36 1 -0.1288 -2.3471 -4.0505 37 1 -0.2026 -2.6800 -1.6215 38 1 0.8519 -1.2889 -1.9708 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878671259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:42:34 Heat of formation + Delta-G solvation = 41.283049 kcal Electronic energy + Delta-G solvation = -22109.546317 eV Core-core repulsion = 18762.866321 eV Total energy + Delta-G solvation = -3346.679996 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.99645 -38.96860 -36.86419 -35.01906 -33.33562 -32.53953 -32.11187 -30.63647 -28.64399 -27.83969 -26.34484 -24.44380 -23.14178 -21.69270 -21.30436 -20.53477 -18.84515 -17.66381 -17.52049 -16.65735 -15.81355 -15.23942 -14.96465 -14.54283 -14.51616 -14.30168 -14.07050 -13.80835 -13.41614 -13.36213 -12.68467 -12.53316 -12.38193 -12.20246 -11.66803 -11.43359 -11.27519 -11.01480 -10.98174 -10.90738 -10.78580 -10.55757 -10.26117 -10.05121 -9.90665 -9.46068 -8.87447 -8.26020 -7.60795 -7.20451 -6.21756 -4.67087 1.42932 2.09326 3.13236 3.18468 3.19339 3.19960 3.97222 4.06835 4.14768 4.47029 4.53106 4.60134 4.77061 4.94656 5.19444 5.34861 5.38123 5.41774 5.49173 5.53683 5.60956 5.66783 5.68912 5.77548 5.83336 5.84915 6.03088 6.08212 6.22363 6.42942 6.52496 6.69360 7.11585 7.21889 7.42750 7.59045 8.10745 8.24096 8.34252 8.99666 9.42263 10.55461 10.73980 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024474 B = 0.004435 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.808214 B = 6312.399175 C = 7077.839136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.195 4.195 3 C -0.070 4.070 4 O 0.099 5.901 5 N -0.350 5.350 6 C 0.032 3.968 7 C 0.131 3.869 8 N -0.530 5.530 9 C 0.047 3.953 10 C 0.125 3.875 11 N -0.644 5.644 12 C 0.560 3.440 13 O -0.578 6.578 14 C -0.545 4.545 15 H 0.072 0.928 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.906 3.094 19 H -0.280 1.280 20 H -0.268 1.268 21 H -0.267 1.267 22 C 0.130 3.870 23 C 0.036 3.964 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.214 0.786 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.049 0.951 36 H 0.095 0.905 37 H 0.038 0.962 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 13.814 12.490 19.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.200 4.200 3 C -0.151 4.151 4 O 0.032 5.968 5 N -0.053 5.053 6 C -0.128 4.128 7 C 0.002 3.998 8 N -0.256 5.256 9 C -0.081 4.081 10 C 0.001 3.999 11 N -0.383 5.383 12 C 0.366 3.634 13 O -0.461 6.461 14 C -0.582 4.582 15 H 0.090 0.910 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.731 3.269 19 H -0.205 1.205 20 H -0.193 1.193 21 H -0.192 1.192 22 C 0.005 3.995 23 C -0.092 4.092 24 H 0.090 0.910 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.230 0.770 28 H 0.073 0.927 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.113 0.887 37 H 0.056 0.944 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.722 12.489 12.145 18.336 hybrid contribution -2.072 0.705 -0.053 2.189 sum 3.650 13.193 12.092 18.265 Atomic orbital electron populations 1.20296 0.87472 1.03949 1.02682 1.21356 0.98657 0.91772 1.08166 1.25714 0.83357 1.01017 1.05045 1.84828 1.29023 1.15710 1.67253 1.73839 1.22355 0.91000 1.18094 1.23320 0.88401 0.98092 1.02993 1.20297 1.00621 0.87602 0.91247 1.61903 1.44526 1.06253 1.12953 1.22535 1.00085 0.86296 0.99228 1.21201 0.92287 0.97921 0.88496 1.48246 1.35207 1.04810 1.50048 1.18249 0.79259 0.87275 0.78647 1.90588 1.72493 1.14308 1.68734 1.20927 1.21152 0.93582 1.22497 0.91043 1.25720 0.96446 0.94672 0.96330 1.70003 1.31550 1.08181 1.29917 0.86458 0.80337 0.80048 0.80080 1.20523 1.19265 1.19218 1.21561 1.02016 0.83090 0.92871 1.22870 0.91245 0.98478 0.96613 0.91001 0.90776 0.90309 0.76994 0.92725 0.89237 0.94446 0.90633 0.89392 0.93214 0.92015 0.93307 0.88715 0.94375 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.88 36.01 0.36 -0.38 16 2 C -0.20 -2.06 5.32 -104.42 -0.56 -2.61 16 3 C -0.07 -0.63 12.26 29.74 0.36 -0.26 16 4 O 0.10 1.18 11.20 17.18 0.19 1.37 16 5 N -0.35 -4.97 12.07 33.42 0.40 -4.56 16 6 C 0.03 0.42 6.15 -82.10 -0.50 -0.09 16 7 C 0.13 1.71 5.47 -4.98 -0.03 1.68 16 8 N -0.53 -8.25 4.62 -235.46 -1.09 -9.34 16 9 C 0.05 0.77 5.62 -3.70 -0.02 0.74 16 10 C 0.13 2.53 6.61 -3.60 -0.02 2.50 16 11 N -0.64 -14.90 3.00 -173.84 -0.52 -15.42 16 12 C 0.56 15.96 7.63 -12.99 -0.10 15.86 16 13 O -0.58 -18.72 14.49 5.20 0.08 -18.65 16 14 C -0.55 -15.15 8.86 -35.63 -0.32 -15.47 16 15 H 0.07 1.80 5.74 -52.49 -0.30 1.50 16 16 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 17 N -0.77 -22.88 11.84 55.55 0.66 -22.22 16 18 Si 0.91 19.82 29.56 -169.99 -5.02 14.79 16 19 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 C 0.13 2.48 6.50 -3.36 -0.02 2.46 16 23 C 0.04 0.58 4.28 -3.46 -0.01 0.56 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.77 5.58 -51.93 -0.29 0.48 16 27 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 28 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.09 1.11 7.97 -51.93 -0.41 0.70 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.05 7.99 -51.93 -0.41 0.63 16 32 H 0.09 1.94 7.04 -51.93 -0.37 1.57 16 33 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 35 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 36 H 0.09 1.85 5.46 -51.93 -0.28 1.56 16 37 H 0.04 0.62 7.69 -51.93 -0.40 0.22 16 38 H 0.08 1.09 5.01 -51.93 -0.26 0.83 16 LS Contribution 309.83 15.07 4.67 4.67 Total: -1.00 -35.14 309.83 -6.42 -41.56 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.82 Total: 0.46 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.96 Total: 7.33 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.55 Total: -51.54 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: 0.27 Total: -17.28 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -35.14 -6.42 -41.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878671259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.840 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds