Wall clock time and date at job start Tue Mar 31 2020 03:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29951 * 126.28455 * 2 1 4 4 O 1.21295 * 110.24897 * 179.68488 * 3 2 1 5 5 C 1.33645 * 109.81120 * 0.47270 * 4 3 2 6 6 C 1.50698 * 126.55038 * 179.80034 * 5 4 3 7 7 C 1.52999 * 109.47302 * 269.68532 * 6 5 4 8 8 H 1.08994 * 109.49879 * 305.06671 * 7 6 5 9 9 C 1.53041 * 109.50060 * 184.99810 * 7 6 5 10 10 C 1.53038 * 109.53645 * 178.65214 * 9 7 6 11 11 C 1.53189 * 109.31669 * 61.37041 * 10 9 7 12 12 N 1.46928 * 108.77168 * 305.36168 * 11 10 9 13 13 C 1.34772 * 120.63451 * 233.58306 * 12 11 10 14 14 O 1.21683 * 120.00511 * 185.26461 * 13 12 11 15 15 C 1.46383 * 119.99594 * 5.26107 * 13 12 11 16 16 H 1.07997 * 119.99859 * 354.32704 * 15 13 12 17 17 C 1.40048 * 119.99629 * 174.59520 * 15 13 12 18 18 N 1.30670 * 120.00103 * 359.73006 * 17 15 13 19 19 Si 1.86798 * 119.99760 * 179.72785 * 17 15 13 20 20 H 1.48498 * 109.47348 * 59.99958 * 19 17 15 21 21 H 1.48497 * 109.47413 * 180.02562 * 19 17 15 22 22 H 1.48504 * 109.46970 * 300.00297 * 19 17 15 23 23 C 1.46926 * 118.73872 * 53.86192 * 12 11 10 24 24 N 1.31128 * 106.89801 * 359.53563 * 5 4 3 25 25 H 1.09003 * 109.46846 * 270.02450 * 1 2 3 26 26 H 1.08998 * 109.46999 * 30.02063 * 1 2 3 27 27 H 1.08998 * 109.46922 * 150.02453 * 1 2 3 28 28 H 1.09004 * 109.47122 * 149.68661 * 6 5 4 29 29 H 1.09004 * 109.47655 * 29.68619 * 6 5 4 30 30 H 1.09007 * 109.45663 * 58.63388 * 9 7 6 31 31 H 1.08999 * 109.44846 * 298.66917 * 9 7 6 32 32 H 1.09001 * 109.49789 * 301.41434 * 10 9 7 33 33 H 1.09005 * 109.49388 * 181.32112 * 10 9 7 34 34 H 1.08998 * 109.59065 * 185.57393 * 11 10 9 35 35 H 1.09000 * 109.70114 * 65.21773 * 11 10 9 36 36 H 0.97004 * 119.99828 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.58861 * 65.92125 * 23 12 11 38 38 H 1.09003 * 109.59159 * 186.35267 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4418 0.7125 0.0063 5 6 3.5299 -0.6211 0.0006 6 6 4.7970 -1.4368 0.0011 7 6 5.2262 -1.7132 -1.4412 8 1 4.4052 -2.1847 -1.9811 9 6 6.4406 -2.6445 -1.4433 10 6 6.8500 -2.9484 -2.8862 11 6 7.2403 -1.6436 -3.5877 12 7 6.1297 -0.6897 -3.4638 13 6 5.6088 -0.0964 -4.5561 14 8 4.7553 0.7622 -4.4336 15 6 6.0700 -0.4849 -5.8900 16 1 6.8905 -1.1790 -5.9967 17 6 5.4509 0.0479 -7.0276 18 7 4.4582 0.8877 -6.8984 19 14 6.0443 -0.4420 -8.7297 20 1 5.9038 -1.9106 -8.8993 21 1 5.2306 0.2556 -9.7575 22 1 7.4709 -0.0601 -8.8855 23 6 5.6017 -0.3901 -2.1258 24 7 2.3030 -1.0841 0.0004 25 1 -0.3633 0.0004 1.0277 26 1 -0.3633 0.8898 -0.5141 27 1 -0.3633 -0.8902 -0.5134 28 1 4.6206 -2.3818 0.5150 29 1 5.5842 -0.8851 0.5150 30 1 6.1860 -3.5743 -0.9346 31 1 7.2690 -2.1618 -0.9247 32 1 6.0136 -3.4083 -3.4125 33 1 7.7004 -3.6303 -2.8871 34 1 7.4374 -1.8401 -4.6416 35 1 8.1330 -1.2279 -3.1204 36 1 4.0296 1.2570 -7.6864 37 1 6.3629 0.1247 -1.5395 38 1 4.7173 0.2408 -2.2147 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887634833.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:04:41 Heat of formation + Delta-G solvation = 19.923665 kcal Electronic energy + Delta-G solvation = -22175.095235 eV Core-core repulsion = 18827.489026 eV Total energy + Delta-G solvation = -3347.606209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.38751 -38.84374 -36.31204 -35.83306 -34.11188 -32.58315 -31.92853 -30.88314 -29.09419 -27.61974 -26.13393 -24.20302 -23.54992 -22.23930 -20.97840 -20.31716 -18.88822 -17.91517 -17.22067 -16.48891 -15.75143 -15.11269 -14.88654 -14.48341 -14.02414 -13.88943 -13.84739 -13.56101 -13.23230 -12.89310 -12.70956 -12.56291 -12.26711 -12.02241 -11.74340 -11.56663 -11.27485 -11.09509 -10.97080 -10.90346 -10.77081 -10.68095 -10.48164 -10.25760 -10.04640 -9.86604 -9.60559 -8.85629 -7.58867 -7.23552 -6.20111 -4.65367 1.33726 2.37357 2.98190 3.14510 3.19604 3.21200 3.76215 4.06897 4.18272 4.48584 4.54833 4.86002 4.95269 4.99029 5.23045 5.31646 5.34680 5.46160 5.48161 5.56280 5.68608 5.76093 5.78297 5.85751 5.95096 5.99879 6.10724 6.14784 6.19495 6.36666 6.47049 6.52271 6.53902 6.78417 7.45003 7.61362 8.12456 8.33641 8.35010 9.01334 9.42698 10.57270 10.75753 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017873 B = 0.005316 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.250949 B = 5265.425745 C = 6383.618564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.163 3.837 3 N -0.384 5.384 4 O 0.082 5.918 5 C 0.192 3.808 6 C -0.021 4.021 7 C -0.101 4.101 8 H 0.081 0.919 9 C -0.105 4.105 10 C -0.135 4.135 11 C 0.119 3.881 12 N -0.641 5.641 13 C 0.558 3.442 14 O -0.577 6.577 15 C -0.545 4.545 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.906 3.094 20 H -0.268 1.268 21 H -0.280 1.280 22 H -0.267 1.267 23 C 0.124 3.876 24 N -0.487 5.487 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.269 0.731 37 H 0.047 0.953 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 -7.409 12.944 14.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.110 4.110 3 N -0.092 5.092 4 O 0.023 5.977 5 C -0.028 4.028 6 C -0.061 4.061 7 C -0.122 4.122 8 H 0.099 0.901 9 C -0.143 4.143 10 C -0.173 4.173 11 C -0.005 4.005 12 N -0.379 5.379 13 C 0.364 3.636 14 O -0.459 6.459 15 C -0.581 4.581 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.731 3.269 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.192 1.192 23 C -0.001 4.001 24 N -0.221 5.221 25 H 0.103 0.897 26 H 0.105 0.895 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.253 -6.267 12.897 14.341 hybrid contribution 0.432 -0.350 -0.867 1.030 sum 0.179 -6.617 12.030 13.731 Atomic orbital electron populations 1.20096 0.83226 1.04745 1.03786 1.25838 1.00514 0.83678 1.00936 1.74615 0.89456 1.23980 1.21192 1.85303 1.22255 1.24764 1.65358 1.28767 0.96999 0.82261 0.94767 1.20369 0.87856 0.97862 1.00009 1.21742 0.99135 0.98833 0.92516 0.90055 1.21472 0.96779 0.98355 0.97648 1.21941 1.01338 0.98547 0.95510 1.21449 0.89081 0.88109 1.01857 1.48163 1.37270 1.47192 1.05299 1.18272 0.81194 0.80680 0.83415 1.90603 1.35379 1.34176 1.85765 1.20940 1.19329 1.28748 0.89103 0.90880 1.25734 0.93726 0.93309 1.00459 1.70010 1.17179 1.22061 1.30445 0.86458 0.79445 0.79362 0.81661 1.19248 1.20563 1.19202 1.21282 0.99423 0.94008 0.85348 1.71838 0.99762 1.29482 1.21066 0.89660 0.89534 0.89159 0.87258 0.87989 0.92127 0.91775 0.91584 0.91691 0.88863 0.94007 0.92037 0.93522 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 36.01 0.38 -0.31 16 2 C 0.16 2.63 8.22 -156.37 -1.28 1.35 16 3 N -0.38 -6.88 12.16 30.90 0.38 -6.50 16 4 O 0.08 1.41 10.96 18.10 0.20 1.61 16 5 C 0.19 2.95 6.95 -13.06 -0.09 2.86 16 6 C -0.02 -0.25 5.32 -27.88 -0.15 -0.40 16 7 C -0.10 -1.49 2.34 -90.27 -0.21 -1.70 16 8 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 9 C -0.10 -1.26 5.16 -26.69 -0.14 -1.40 16 10 C -0.13 -1.89 6.08 -26.61 -0.16 -2.05 16 11 C 0.12 2.12 6.35 -3.71 -0.02 2.10 16 12 N -0.64 -14.43 2.97 -174.16 -0.52 -14.94 16 13 C 0.56 16.01 7.61 -12.99 -0.10 15.91 16 14 O -0.58 -19.05 14.48 5.20 0.08 -18.97 16 15 C -0.54 -15.23 8.88 -35.63 -0.32 -15.55 16 16 H 0.07 1.84 5.64 -52.49 -0.30 1.54 16 17 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 18 N -0.77 -23.28 11.84 55.55 0.66 -22.63 16 19 Si 0.91 20.06 29.56 -169.99 -5.02 15.03 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C 0.12 2.39 5.45 -3.48 -0.02 2.37 16 24 N -0.49 -7.99 11.55 -9.87 -0.11 -8.10 16 25 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.77 5.30 -51.93 -0.28 1.49 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.27 7.42 8.29 -40.82 -0.34 7.09 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.08 1.83 6.19 -51.93 -0.32 1.50 16 LS Contribution 316.33 15.07 4.77 4.77 Total: -1.00 -36.63 316.33 -6.89 -43.52 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -5.10 Total: 0.69 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: -2.21 Total: 5.54 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: 0.40 Total: -52.17 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.27 Total: -17.37 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.63 -6.89 -43.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887634833.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.439 kcal (2) G-P(sol) polarization free energy of solvation -36.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds