Wall clock time and date at job start Tue Mar 31 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30173 * 126.80964 * 2 1 4 4 O 1.20899 * 111.74031 * 180.29196 * 3 2 1 5 5 C 1.34281 * 111.62957 * 359.69872 * 4 3 2 6 6 C 1.35855 * 106.35915 * 0.02562 * 5 4 3 7 7 N 1.40782 * 128.05366 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00259 * 0.30057 * 7 6 5 9 9 O 1.21595 * 119.99863 * 354.63726 * 8 7 6 10 10 N 1.34775 * 119.99682 * 174.63782 * 8 7 6 11 11 C 1.46918 * 120.63657 * 4.74132 * 10 8 7 12 12 C 1.52760 * 109.00850 * 233.58299 * 11 10 8 13 13 C 1.53034 * 109.38585 * 305.58299 * 12 11 10 14 14 C 1.53045 * 109.53489 * 61.23637 * 13 12 11 15 15 H 1.08998 * 109.49473 * 58.59411 * 14 13 12 16 16 C 1.50707 * 109.49708 * 178.68480 * 14 13 12 17 17 H 1.08004 * 119.99575 * 359.84091 * 16 14 13 18 18 C 1.37872 * 120.00150 * 179.84080 * 16 14 13 19 19 N 1.31523 * 119.99847 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00332 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47191 * 89.99739 * 20 18 16 22 22 H 1.48497 * 109.47255 * 210.00314 * 20 18 16 23 23 H 1.48507 * 109.46979 * 330.00311 * 20 18 16 24 24 C 1.46933 * 120.62967 * 185.01406 * 10 8 7 25 25 H 1.08996 * 109.47300 * 270.19927 * 1 2 3 26 26 H 1.09004 * 109.47072 * 30.19763 * 1 2 3 27 27 H 1.08999 * 109.47030 * 150.19770 * 1 2 3 28 28 H 1.08003 * 126.82306 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99601 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.58491 * 353.41345 * 11 10 8 31 31 H 1.08993 * 109.59166 * 113.83946 * 11 10 8 32 32 H 1.09005 * 109.56673 * 185.54574 * 12 11 10 33 33 H 1.09002 * 109.36520 * 65.49822 * 12 11 10 34 34 H 1.09006 * 109.45929 * 301.22169 * 13 12 11 35 35 H 1.08999 * 109.46589 * 181.26231 * 13 12 11 36 36 H 0.96996 * 120.00008 * 180.02562 * 19 18 16 37 37 H 1.08997 * 109.59081 * 246.15984 * 24 10 8 38 38 H 1.09005 * 109.58507 * 6.44479 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4544 0.7279 -0.0057 5 6 3.6078 -0.6061 -0.0039 6 6 2.3565 -1.1352 0.0034 7 7 1.9890 -2.4942 0.0075 8 6 2.9397 -3.4494 0.0102 9 8 4.1117 -3.1410 -0.0893 10 7 2.5914 -4.7465 0.1231 11 6 1.1768 -5.1431 0.1398 12 6 0.9134 -5.9943 1.3806 13 6 1.8957 -7.1675 1.4097 14 6 3.3282 -6.6338 1.4830 15 1 3.4415 -6.0173 2.3747 16 6 4.2931 -7.7898 1.5442 17 1 3.9220 -8.8040 1.5345 18 6 5.6496 -7.5527 1.6124 19 7 6.1015 -6.3176 1.6246 20 14 6.8457 -8.9855 1.6874 21 1 7.2352 -9.3780 0.3092 22 1 8.0556 -8.5811 2.4476 23 1 6.1971 -10.1368 2.3652 24 6 3.6191 -5.7904 0.2378 25 1 -0.3634 0.0036 1.0276 26 1 -0.3633 0.8882 -0.5169 27 1 -0.3633 -0.8917 -0.5108 28 1 4.5407 -1.1504 -0.0082 29 1 1.0515 -2.7430 0.0123 30 1 0.5482 -4.2531 0.1688 31 1 0.9497 -5.7244 -0.7537 32 1 -0.1075 -6.3753 1.3519 33 1 1.0494 -5.3838 2.2733 34 1 1.7762 -7.7637 0.5049 35 1 1.6943 -7.7883 2.2826 36 1 7.0558 -6.1507 1.6722 37 1 3.5951 -6.4256 -0.6476 38 1 4.6017 -5.3273 0.3289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888720294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:53 Heat of formation + Delta-G solvation = 33.867799 kcal Electronic energy + Delta-G solvation = -22188.834109 eV Core-core repulsion = 18841.832563 eV Total energy + Delta-G solvation = -3347.001546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.75706 -40.11265 -37.27711 -35.52019 -33.78149 -33.16040 -31.99361 -30.44600 -29.76298 -28.68100 -25.20689 -24.97213 -22.61245 -21.95225 -21.62349 -20.03398 -18.82329 -18.30646 -17.45678 -17.19581 -16.35452 -16.19257 -15.04686 -14.81935 -14.45941 -13.94129 -13.73492 -13.67209 -13.51622 -13.24332 -12.94731 -12.70951 -12.48997 -12.46062 -12.05727 -11.25890 -11.25505 -11.07588 -10.96333 -10.59025 -10.49958 -10.31196 -9.99616 -9.74303 -9.69831 -9.20353 -9.05728 -8.51774 -8.35016 -7.78500 -6.05339 -4.14259 1.64511 2.24829 2.62374 3.28228 3.35942 3.37743 3.62585 3.66882 4.00217 4.29022 4.39435 4.45026 5.02480 5.08985 5.25044 5.29637 5.35249 5.38346 5.49535 5.53182 5.82124 5.88257 6.01754 6.05283 6.20479 6.43049 6.53458 6.63968 6.68544 6.87219 6.90462 7.15907 7.25555 7.62879 7.80977 7.95486 8.24529 8.31909 8.35431 8.85690 8.91273 9.51923 11.00080 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.004663 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.217999 B = 6002.686140 C = 6957.954127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.006 4.006 3 N -0.359 5.359 4 O 0.097 5.903 5 C -0.073 4.073 6 C 0.054 3.946 7 N -0.658 5.658 8 C 0.702 3.298 9 O -0.568 6.568 10 N -0.612 5.612 11 C 0.112 3.888 12 C -0.134 4.134 13 C -0.111 4.111 14 C 0.039 3.961 15 H 0.029 0.971 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.880 5.880 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.127 3.873 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.238 0.762 29 H 0.406 0.594 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.053 0.947 36 H 0.264 0.736 37 H 0.044 0.956 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.408 7.465 -3.503 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.167 4.167 3 N -0.066 5.066 4 O 0.033 5.967 5 C -0.158 4.158 6 C -0.047 4.047 7 N -0.311 5.311 8 C 0.404 3.596 9 O -0.445 6.445 10 N -0.348 5.348 11 C -0.012 4.012 12 C -0.173 4.173 13 C -0.148 4.148 14 C 0.020 3.980 15 H 0.047 0.953 16 C -0.561 4.561 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.007 3.993 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.094 0.906 28 H 0.253 0.747 29 H 0.244 0.756 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.575 9.007 -3.554 15.091 hybrid contribution 0.053 -1.883 0.073 1.885 sum -11.522 7.124 -3.481 13.986 Atomic orbital electron populations 1.20105 0.85981 1.03557 1.03288 1.23215 0.98652 0.87699 1.07130 1.73758 0.89856 1.23754 1.19185 1.84830 1.20556 1.23317 1.68040 1.26293 1.01114 0.81670 1.06689 1.18335 0.92987 0.85057 1.08276 1.42238 1.09881 1.01189 1.77771 1.15830 0.84308 0.80988 0.78522 1.90818 1.16444 1.80331 1.56871 1.47809 1.07823 1.04532 1.74636 1.21501 0.82288 0.98065 0.99297 1.21885 0.99416 0.98613 0.97367 1.21623 0.96750 0.95688 1.00760 1.18999 0.90205 0.94845 0.93954 0.95259 1.21061 0.90813 0.92362 1.51833 0.92281 1.25051 0.98543 0.95666 0.94707 1.69873 1.14337 1.18457 1.49083 0.86578 0.80662 0.82556 0.78128 1.20594 1.21170 1.19929 1.22338 0.91866 0.86663 0.98399 0.90213 0.90279 0.90610 0.74651 0.75597 0.92302 0.91527 0.91997 0.92079 0.93044 0.92851 0.92558 0.93779 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.48 36.01 0.38 -0.26 16 2 C -0.01 -0.08 7.34 -81.94 -0.60 -0.68 16 3 N -0.36 -5.37 12.06 33.56 0.40 -4.96 16 4 O 0.10 1.47 11.20 16.54 0.19 1.66 16 5 C -0.07 -1.16 11.17 29.88 0.33 -0.82 16 6 C 0.05 0.82 7.16 -83.24 -0.60 0.23 16 7 N -0.66 -9.77 5.39 -13.99 -0.08 -9.85 16 8 C 0.70 13.42 8.27 -86.92 -0.72 12.70 16 9 O -0.57 -12.87 13.20 5.28 0.07 -12.80 16 10 N -0.61 -11.46 2.98 -178.77 -0.53 -12.00 16 11 C 0.11 1.57 6.40 -3.94 -0.03 1.54 16 12 C -0.13 -1.96 6.06 -26.84 -0.16 -2.13 16 13 C -0.11 -2.05 5.11 -26.69 -0.14 -2.19 16 14 C 0.04 0.92 2.25 -91.65 -0.21 0.72 16 15 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 16 C -0.52 -13.64 8.56 -34.44 -0.29 -13.94 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -24.89 11.39 55.43 0.63 -24.26 16 20 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.13 2.92 5.39 -3.71 -0.02 2.90 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 28 H 0.24 3.93 6.16 -52.48 -0.32 3.61 16 29 H 0.41 4.64 6.24 -40.82 -0.25 4.38 16 30 H 0.06 0.62 5.57 -51.93 -0.29 0.33 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.13 3.37 5.16 -51.93 -0.27 3.11 16 LS Contribution 311.13 15.07 4.69 4.69 Total: -1.00 -30.42 311.13 -6.70 -37.12 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -4.90 Total: 5.02 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -2.15 Total: -0.32 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.43 Total: -51.07 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.26 Total: -11.14 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.42 -6.70 -37.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888720294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.983 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds