Wall clock time and date at job start Tue Mar 31 2020 01:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30173 * 126.80964 * 2 1 4 4 O 1.20899 * 111.74031 * 180.29196 * 3 2 1 5 5 C 1.34281 * 111.62957 * 359.69872 * 4 3 2 6 6 C 1.35855 * 106.35915 * 0.02562 * 5 4 3 7 7 N 1.40782 * 128.05366 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00259 * 0.30057 * 7 6 5 9 9 O 1.21595 * 119.99863 * 354.63726 * 8 7 6 10 10 N 1.34775 * 119.99682 * 174.63782 * 8 7 6 11 11 C 1.46918 * 120.63657 * 4.74132 * 10 8 7 12 12 C 1.52760 * 109.00850 * 233.58299 * 11 10 8 13 13 C 1.53034 * 109.38585 * 305.58299 * 12 11 10 14 14 C 1.53045 * 109.53489 * 61.23637 * 13 12 11 15 15 H 1.08998 * 109.49473 * 58.59411 * 14 13 12 16 16 C 1.50707 * 109.49708 * 178.68480 * 14 13 12 17 17 H 1.08004 * 119.99575 * 359.84091 * 16 14 13 18 18 C 1.37872 * 120.00150 * 179.84080 * 16 14 13 19 19 N 1.31523 * 119.99847 * 0.02562 * 18 16 14 20 20 Si 1.86796 * 120.00332 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.47191 * 89.99739 * 20 18 16 22 22 H 1.48497 * 109.47255 * 210.00314 * 20 18 16 23 23 H 1.48507 * 109.46979 * 330.00311 * 20 18 16 24 24 C 1.46933 * 120.62967 * 185.01406 * 10 8 7 25 25 H 1.08996 * 109.47300 * 270.19927 * 1 2 3 26 26 H 1.09004 * 109.47072 * 30.19763 * 1 2 3 27 27 H 1.08999 * 109.47030 * 150.19770 * 1 2 3 28 28 H 1.08003 * 126.82306 * 179.97438 * 5 4 3 29 29 H 0.97000 * 119.99601 * 180.02562 * 7 6 5 30 30 H 1.09004 * 109.58491 * 353.41345 * 11 10 8 31 31 H 1.08993 * 109.59166 * 113.83946 * 11 10 8 32 32 H 1.09005 * 109.56673 * 185.54574 * 12 11 10 33 33 H 1.09002 * 109.36520 * 65.49822 * 12 11 10 34 34 H 1.09006 * 109.45929 * 301.22169 * 13 12 11 35 35 H 1.08999 * 109.46589 * 181.26231 * 13 12 11 36 36 H 0.96996 * 120.00008 * 180.02562 * 19 18 16 37 37 H 1.08997 * 109.59081 * 246.15984 * 24 10 8 38 38 H 1.09005 * 109.58507 * 6.44479 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2870 1.0422 0.0000 4 8 3.4544 0.7279 -0.0057 5 6 3.6078 -0.6061 -0.0039 6 6 2.3565 -1.1352 0.0034 7 7 1.9890 -2.4942 0.0075 8 6 2.9397 -3.4494 0.0102 9 8 4.1117 -3.1410 -0.0893 10 7 2.5914 -4.7465 0.1231 11 6 1.1768 -5.1431 0.1398 12 6 0.9134 -5.9943 1.3806 13 6 1.8957 -7.1675 1.4097 14 6 3.3282 -6.6338 1.4830 15 1 3.4415 -6.0173 2.3747 16 6 4.2931 -7.7898 1.5442 17 1 3.9220 -8.8040 1.5345 18 6 5.6496 -7.5527 1.6124 19 7 6.1015 -6.3176 1.6246 20 14 6.8457 -8.9855 1.6874 21 1 7.2352 -9.3780 0.3092 22 1 8.0556 -8.5811 2.4476 23 1 6.1971 -10.1368 2.3652 24 6 3.6191 -5.7904 0.2378 25 1 -0.3634 0.0036 1.0276 26 1 -0.3633 0.8882 -0.5169 27 1 -0.3633 -0.8917 -0.5108 28 1 4.5407 -1.1504 -0.0082 29 1 1.0515 -2.7430 0.0123 30 1 0.5482 -4.2531 0.1688 31 1 0.9497 -5.7244 -0.7537 32 1 -0.1075 -6.3753 1.3519 33 1 1.0494 -5.3838 2.2733 34 1 1.7762 -7.7637 0.5049 35 1 1.6943 -7.7883 2.2826 36 1 7.0558 -6.1507 1.6722 37 1 3.5951 -6.4256 -0.6476 38 1 4.6017 -5.3273 0.3289 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888720294.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:53:52 Heat of formation + Delta-G solvation = 14.265370 kcal Electronic energy + Delta-G solvation = -22189.684134 eV Core-core repulsion = 18841.832563 eV Total energy + Delta-G solvation = -3347.851571 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.89732 -41.57013 -38.76613 -36.82988 -35.41901 -34.53461 -33.53495 -31.79164 -31.32213 -29.53494 -27.09213 -26.42054 -23.96807 -23.44146 -22.75181 -21.55841 -20.23883 -19.61517 -18.69104 -18.60338 -18.03867 -17.58444 -16.66935 -16.44758 -16.03405 -15.26037 -15.24735 -14.88145 -14.51751 -14.33480 -14.25093 -14.08408 -13.99977 -13.57834 -13.41436 -12.87806 -12.70956 -12.56157 -12.32276 -12.27706 -12.22161 -11.87261 -11.63912 -11.31986 -10.97037 -10.86782 -10.80752 -10.51193 -9.77728 -9.19868 -8.10029 -6.26348 0.44097 1.08935 1.26984 1.42942 1.43732 1.53592 2.17984 2.39567 2.44476 2.79477 3.18825 3.22275 3.42851 3.95264 4.01754 4.15747 4.29551 4.46133 4.60274 4.67985 4.70117 4.73785 4.79517 4.83674 4.85822 5.11925 5.13402 5.24427 5.27492 5.31671 5.40145 5.54129 5.59980 5.82513 5.93279 6.07484 6.35153 6.84661 6.88894 7.17939 7.40662 7.44690 8.93323 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.004663 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.217999 B = 6002.686140 C = 6957.954127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.016 3.984 3 N -0.375 5.375 4 O 0.085 5.915 5 C -0.085 4.085 6 C 0.041 3.959 7 N -0.635 5.635 8 C 0.695 3.305 9 O -0.613 6.613 10 N -0.616 5.616 11 C 0.105 3.895 12 C -0.126 4.126 13 C -0.106 4.106 14 C 0.038 3.962 15 H -0.013 1.013 16 C -0.535 4.535 17 H 0.062 0.938 18 C 0.012 3.988 19 N -0.914 5.914 20 Si 0.955 3.045 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.264 1.264 24 C 0.142 3.858 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.221 0.779 29 H 0.425 0.575 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.260 0.740 37 H 0.040 0.960 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 7.028 -3.970 17.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.146 4.146 3 N -0.085 5.085 4 O 0.025 5.975 5 C -0.169 4.169 6 C -0.059 4.059 7 N -0.289 5.289 8 C 0.397 3.603 9 O -0.493 6.493 10 N -0.350 5.350 11 C -0.017 4.017 12 C -0.164 4.164 13 C -0.144 4.144 14 C 0.018 3.982 15 H 0.006 0.994 16 C -0.574 4.574 17 H 0.080 0.920 18 C -0.187 4.187 19 N -0.553 5.553 20 Si 0.780 3.220 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.188 1.188 24 C 0.020 3.980 25 H 0.116 0.884 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.237 0.763 29 H 0.268 0.732 30 H 0.120 0.880 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.050 8.568 -4.022 17.779 hybrid contribution 1.070 -1.717 0.231 2.037 sum -13.980 6.851 -3.791 16.023 Atomic orbital electron populations 1.20400 0.82348 1.05472 1.04989 1.23854 1.00532 0.85996 1.04256 1.73756 0.89835 1.24512 1.20371 1.84825 1.21102 1.22719 1.68856 1.26140 1.01355 0.82283 1.07172 1.18529 0.93228 0.85447 1.08733 1.41804 1.09991 1.00303 1.76810 1.16003 0.84308 0.81634 0.78357 1.90804 1.18754 1.81163 1.58627 1.47666 1.09272 1.03643 1.74457 1.21907 0.79591 1.00284 0.99893 1.21845 1.00509 0.96830 0.97265 1.21517 0.94411 0.97401 1.01061 1.18931 0.93299 0.93679 0.92275 0.99448 1.21518 0.91621 0.93377 1.50877 0.91961 1.25846 1.00468 0.97808 0.94618 1.70065 1.14148 1.20518 1.50521 0.85606 0.78343 0.79827 0.78200 1.20061 1.21513 1.18788 1.21708 0.91334 0.87174 0.97802 0.88431 0.89090 0.88043 0.76270 0.73249 0.87983 0.89464 0.87403 0.93060 0.92223 0.93030 0.93125 0.94213 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.01 10.48 71.24 0.75 -0.26 16 2 C 0.02 0.38 7.34 43.68 0.32 0.70 16 3 N -0.38 -10.81 12.06 -48.97 -0.59 -11.40 16 4 O 0.09 2.62 11.20 69.36 0.78 3.40 16 5 C -0.09 -2.77 11.17 67.27 0.75 -2.02 16 6 C 0.04 1.20 7.16 38.03 0.27 1.47 16 7 N -0.63 -17.61 5.39 -316.44 -1.70 -19.31 16 8 C 0.70 26.56 8.27 179.06 1.48 28.04 16 9 O -0.61 -29.15 13.20 -4.02 -0.05 -29.21 16 10 N -0.62 -22.61 2.98 -837.76 -2.49 -25.11 16 11 C 0.10 2.53 6.40 86.22 0.55 3.08 16 12 C -0.13 -3.24 6.06 30.53 0.19 -3.05 16 13 C -0.11 -3.78 5.11 30.62 0.16 -3.62 16 14 C 0.04 1.80 2.25 -11.46 -0.03 1.78 16 15 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 16 C -0.54 -28.52 8.56 25.60 0.22 -28.30 16 17 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 18 C 0.01 0.67 5.30 84.65 0.45 1.12 16 19 N -0.91 -54.21 11.39 21.45 0.24 -53.96 16 20 Si 0.95 43.34 29.54 68.60 2.03 45.37 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 C 0.14 6.72 5.39 86.36 0.47 7.18 16 25 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.10 0.88 8.10 -2.39 -0.02 0.86 16 28 H 0.22 7.95 6.16 -2.91 -0.02 7.93 16 29 H 0.43 7.97 6.24 -92.71 -0.58 7.39 16 30 H 0.10 1.58 5.57 -2.38 -0.01 1.56 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 37 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.08 4.53 5.16 -2.38 -0.01 4.52 16 Total: -1.00 -71.35 311.13 4.29 -67.06 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.51 Total: 17.04 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 5.57 Total: 6.12 kcal Atomic # 7 Polarization: -105.24 SS G_CDS: -4.55 Total: -109.79 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: 0.72 Total: -25.81 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -71.35 4.29 -67.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888720294.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.330 kcal (2) G-P(sol) polarization free energy of solvation -71.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds