Wall clock time and date at job start Tue Mar 31 2020 02:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34479 * 126.16600 * 2 1 4 4 C 1.30256 * 108.70107 * 180.26868 * 3 2 1 5 5 O 1.33973 * 108.75809 * 359.75562 * 4 3 2 6 6 C 1.34328 * 126.16672 * 179.85257 * 2 1 3 7 7 C 1.50703 * 126.44097 * 0.02562 * 6 2 1 8 8 N 1.46897 * 109.47390 * 89.70821 * 7 6 2 9 9 C 1.46905 * 110.99826 * 169.99874 * 8 7 6 10 10 C 1.53243 * 109.33672 * 187.25448 * 9 8 7 11 11 N 1.47076 * 108.52280 * 306.17389 * 10 9 8 12 12 C 1.34777 * 120.88062 * 231.18540 * 11 10 9 13 13 O 1.21687 * 120.00006 * 5.22924 * 12 11 10 14 14 C 1.46376 * 120.00313 * 185.22734 * 12 11 10 15 15 H 1.07997 * 119.99552 * 354.99977 * 14 12 11 16 16 C 1.40044 * 120.00321 * 175.00114 * 14 12 11 17 17 N 1.30673 * 119.99689 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00192 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47087 * 179.97438 * 18 16 14 20 20 H 1.48501 * 109.47042 * 299.99758 * 18 16 14 21 21 H 1.48503 * 109.47023 * 59.99987 * 18 16 14 22 22 C 1.47077 * 118.23996 * 51.45605 * 11 10 9 23 23 C 1.46898 * 111.00153 * 294.30172 * 8 7 6 24 24 H 1.08999 * 109.47303 * 270.14680 * 1 2 3 25 25 H 1.09001 * 109.47040 * 30.14942 * 1 2 3 26 26 H 1.09002 * 109.47396 * 150.14130 * 1 2 3 27 27 H 1.07995 * 125.62386 * 179.73686 * 4 3 2 28 28 H 1.09003 * 109.46865 * 329.70842 * 7 6 2 29 29 H 1.09003 * 109.47067 * 209.71418 * 7 6 2 30 30 H 1.08994 * 109.49159 * 67.30254 * 9 8 7 31 31 H 1.08996 * 109.49043 * 307.21370 * 9 8 7 32 32 H 1.08999 * 109.62657 * 186.46027 * 10 9 8 33 33 H 1.09002 * 109.78902 * 65.97743 * 10 9 8 34 34 H 0.97000 * 120.00181 * 180.02562 * 17 16 14 35 35 H 1.09007 * 109.62715 * 68.25082 * 22 11 10 36 36 H 1.09000 * 109.63081 * 188.83321 * 22 11 10 37 37 H 1.09001 * 109.49368 * 292.70476 * 23 8 7 38 38 H 1.08999 * 109.49029 * 52.75792 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 -0.0058 5 8 3.5733 -0.6446 -0.0042 6 6 2.2997 -1.0844 0.0028 7 6 1.8492 -2.5226 0.0059 8 7 1.6966 -2.9910 -1.3779 9 6 1.4906 -4.4448 -1.4219 10 6 1.5175 -4.9173 -2.8794 11 7 0.5411 -4.1273 -3.6448 12 6 -0.3815 -4.7309 -4.4200 13 8 -0.4765 -5.9440 -4.4203 14 6 -1.2693 -3.9271 -5.2617 15 1 -1.2405 -2.8492 -5.2016 16 6 -2.1560 -4.5559 -6.1447 17 7 -2.1904 -5.8601 -6.2176 18 14 -3.2884 -3.5301 -7.2193 19 1 -4.1216 -4.4281 -8.0588 20 1 -4.1681 -2.6987 -6.3590 21 1 -2.4753 -2.6482 -8.0947 22 6 0.6021 -2.6611 -3.5465 23 6 0.6074 -2.2776 -2.0581 24 1 -0.3634 0.0026 1.0276 25 1 -0.3633 0.8887 -0.5162 26 1 -0.3634 -0.8913 -0.5116 27 1 4.4066 1.3433 -0.0113 28 1 0.8936 -2.6028 0.5242 29 1 2.5922 -3.1349 0.5170 30 1 0.5255 -4.6890 -0.9783 31 1 2.2842 -4.9416 -0.8638 32 1 1.2520 -5.9734 -2.9269 33 1 2.5140 -4.7713 -3.2964 34 1 -2.8042 -6.2956 -6.8295 35 1 1.5128 -2.2997 -4.0241 36 1 -0.2690 -2.2248 -4.0352 37 1 -0.3455 -2.5520 -1.6055 38 1 0.7602 -1.2028 -1.9609 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895065771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:36:31 Heat of formation + Delta-G solvation = -22.975214 kcal Electronic energy + Delta-G solvation = -22138.740154 eV Core-core repulsion = 18789.273710 eV Total energy + Delta-G solvation = -3349.466444 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.28616 -40.48705 -38.51063 -36.14517 -35.44818 -34.62579 -32.97192 -31.81039 -30.20089 -28.55989 -27.36996 -25.39159 -24.63183 -23.13506 -22.49959 -21.54062 -20.58234 -18.57503 -18.07693 -17.90986 -17.56035 -16.48360 -16.34315 -16.02341 -15.88476 -15.84571 -15.55260 -15.32095 -14.49329 -14.40287 -14.23445 -13.93336 -13.45882 -13.35970 -13.18695 -13.11517 -12.75512 -12.67833 -12.57175 -12.24058 -12.03290 -12.00260 -11.96166 -11.81828 -11.43511 -10.91826 -9.80610 -9.76022 -9.49950 -9.02962 -8.29319 -6.84478 0.48471 1.40244 1.43245 1.54764 1.69402 1.88033 2.23554 2.45445 2.71107 2.99060 3.34622 3.58488 3.77816 3.86079 3.93750 4.08281 4.09094 4.28514 4.34418 4.41257 4.52578 4.62956 4.66679 4.70518 4.75182 4.82184 4.84849 4.93757 5.04056 5.14684 5.18454 5.37181 5.45876 5.70788 5.89477 5.92250 6.12004 6.39983 6.77765 6.87652 7.40471 8.45614 8.66636 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024751 B = 0.004447 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.985621 B = 6294.907254 C = 7045.626210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.021 4.021 3 N -0.522 5.522 4 C 0.182 3.818 5 O -0.207 6.207 6 C -0.044 4.044 7 C 0.140 3.860 8 N -0.540 5.540 9 C 0.061 3.939 10 C 0.121 3.879 11 N -0.647 5.647 12 C 0.541 3.459 13 O -0.631 6.631 14 C -0.570 4.570 15 H 0.093 0.907 16 C 0.031 3.969 17 N -0.822 5.822 18 Si 0.993 3.007 19 H -0.275 1.275 20 H -0.252 1.252 21 H -0.255 1.255 22 C 0.126 3.874 23 C 0.047 3.953 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.292 0.708 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.031 0.969 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.274 0.726 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.203 12.993 13.267 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.140 4.140 3 N -0.251 5.251 4 C -0.044 4.044 5 O -0.093 6.093 6 C -0.098 4.098 7 C 0.012 3.988 8 N -0.265 5.265 9 C -0.067 4.067 10 C -0.003 4.003 11 N -0.384 5.384 12 C 0.348 3.652 13 O -0.519 6.519 14 C -0.606 4.606 15 H 0.110 0.890 16 C -0.184 4.184 17 N -0.452 5.452 18 Si 0.813 3.187 19 H -0.200 1.200 20 H -0.176 1.176 21 H -0.179 1.179 22 C 0.003 3.997 23 C -0.081 4.081 24 H 0.105 0.895 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.307 0.693 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.049 0.951 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.364 12.853 12.956 20.075 hybrid contribution -0.781 -0.678 -0.251 1.065 sum 7.583 12.174 12.705 19.161 Atomic orbital electron populations 1.20416 0.85825 1.03968 1.03794 1.21796 0.98677 0.87763 1.05782 1.70359 1.02614 1.32307 1.19841 1.29024 0.98154 0.79177 0.98070 1.84442 1.30078 1.25313 1.69465 1.23096 0.80935 0.97645 1.08102 1.20454 1.01703 0.86826 0.89768 1.61864 1.44731 1.04805 1.15129 1.22369 1.00980 0.87128 0.96265 1.21337 0.91992 0.95868 0.91112 1.48126 1.34358 1.06437 1.49511 1.18644 0.80077 0.87166 0.79330 1.90535 1.74044 1.16808 1.70501 1.21464 1.21480 0.94626 1.23048 0.88962 1.26961 0.97924 0.95982 0.97581 1.70178 1.31998 1.11660 1.31337 0.85134 0.77616 0.78181 0.77803 1.19989 1.17634 1.17857 1.21702 1.01805 0.80683 0.95547 1.22758 0.91920 0.99211 0.94239 0.89514 0.90399 0.90185 0.69309 0.90042 0.87084 0.95111 0.87085 0.92132 0.92397 0.91602 0.92779 0.89474 0.94415 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 9.42 71.24 0.67 -0.96 16 2 C -0.02 -0.48 6.16 41.26 0.25 -0.23 16 3 N -0.52 -12.36 11.29 -304.07 -3.43 -15.80 16 4 C 0.18 3.23 13.23 130.48 1.73 4.95 16 5 O -0.21 -4.55 10.78 -3.70 -0.04 -4.59 16 6 C -0.04 -1.01 6.29 24.79 0.16 -0.86 16 7 C 0.14 2.92 5.20 85.56 0.44 3.37 16 8 N -0.54 -14.65 4.62 -898.87 -4.15 -18.80 16 9 C 0.06 1.77 5.62 86.38 0.49 2.26 16 10 C 0.12 4.75 6.61 86.35 0.57 5.32 16 11 N -0.65 -29.91 3.00 -822.13 -2.47 -32.38 16 12 C 0.54 31.67 7.63 86.36 0.66 32.33 16 13 O -0.63 -42.54 14.49 -4.31 -0.06 -42.61 16 14 C -0.57 -32.10 8.86 24.83 0.22 -31.88 16 15 H 0.09 4.63 5.74 -2.91 -0.02 4.61 16 16 C 0.03 1.70 5.50 85.30 0.47 2.17 16 17 N -0.82 -50.36 11.84 21.83 0.26 -50.11 16 18 Si 0.99 40.63 29.56 68.60 2.03 42.66 16 19 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 21 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 22 C 0.13 4.72 6.50 86.50 0.56 5.28 16 23 C 0.05 1.39 4.10 86.54 0.36 1.75 16 24 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.58 4.79 -2.39 -0.01 1.57 16 27 H 0.29 1.78 8.06 -2.91 -0.02 1.75 16 28 H 0.08 1.51 7.79 -2.39 -0.02 1.49 16 29 H 0.11 1.93 7.97 -2.39 -0.02 1.91 16 30 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 2.50 7.99 -2.39 -0.02 2.48 16 32 H 0.06 2.71 7.04 -2.39 -0.02 2.69 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 35 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.09 3.37 5.46 -2.39 -0.01 3.35 16 37 H 0.04 1.15 7.50 -2.39 -0.02 1.13 16 38 H 0.10 2.56 4.95 -2.39 -0.01 2.55 16 Total: -1.00 -80.19 308.29 -0.21 -80.40 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 1.09 Total: 17.71 kcal Atomic # 6 Polarization: 16.94 SS G_CDS: 6.57 Total: 23.51 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -9.80 Total: -117.08 kcal Atomic # 8 Polarization: -47.10 SS G_CDS: -0.10 Total: -47.20 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -80.19 -0.21 -80.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.428 kcal (2) G-P(sol) polarization free energy of solvation -80.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds