Wall clock time and date at job start Tue Mar 31 2020 02:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30249 * 125.62000 * 2 1 4 4 C 1.34476 * 108.70349 * 180.02562 * 3 2 1 5 5 C 1.34335 * 107.66429 * 0.02562 * 4 3 2 6 6 C 1.50703 * 126.44028 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47306 * 89.99652 * 6 5 4 8 8 C 1.46905 * 110.99826 * 189.99830 * 7 6 5 9 9 C 1.53243 * 109.33672 * 187.25448 * 8 7 6 10 10 N 1.47076 * 108.52280 * 306.17389 * 9 8 7 11 11 C 1.34777 * 120.88062 * 231.18540 * 10 9 8 12 12 O 1.21687 * 120.00006 * 5.22924 * 11 10 9 13 13 C 1.46376 * 120.00313 * 185.22734 * 11 10 9 14 14 H 1.07997 * 119.99552 * 354.99977 * 13 11 10 15 15 C 1.40044 * 120.00321 * 175.00114 * 13 11 10 16 16 N 1.30673 * 119.99689 * 359.97438 * 15 13 11 17 17 Si 1.86795 * 120.00192 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47234 * 269.99511 * 17 15 13 19 19 H 1.48504 * 109.46981 * 29.99629 * 17 15 13 20 20 H 1.48500 * 109.47228 * 149.99275 * 17 15 13 21 21 C 1.47077 * 118.23996 * 51.45605 * 10 9 8 22 22 C 1.46898 * 111.00153 * 314.30128 * 7 6 5 23 23 O 1.33977 * 125.61680 * 180.33804 * 2 1 3 24 24 H 1.08991 * 109.47303 * 89.97387 * 1 2 3 25 25 H 1.09005 * 109.46814 * 209.97182 * 1 2 3 26 26 H 1.08997 * 109.46965 * 329.96978 * 1 2 3 27 27 H 1.07999 * 126.16868 * 180.02562 * 4 3 2 28 28 H 1.09008 * 109.47033 * 329.99731 * 6 5 4 29 29 H 1.09000 * 109.46752 * 210.00150 * 6 5 4 30 30 H 1.08994 * 109.49159 * 67.30254 * 8 7 6 31 31 H 1.08996 * 109.49043 * 307.21370 * 8 7 6 32 32 H 1.08999 * 109.62657 * 186.46027 * 9 8 7 33 33 H 1.09002 * 109.78902 * 65.97743 * 9 8 7 34 34 H 0.97000 * 120.00181 * 180.02562 * 16 15 13 35 35 H 1.09007 * 109.62715 * 68.25082 * 21 10 9 36 36 H 1.09000 * 109.63081 * 188.83321 * 21 10 9 37 37 H 1.09001 * 109.49368 * 292.70476 * 22 7 6 38 38 H 1.08999 * 109.49029 * 52.75792 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6675 -0.0006 5 6 3.5698 -0.6757 -0.0015 6 6 4.7937 -1.5550 -0.0018 7 7 5.1912 -1.8416 1.3830 8 6 6.5068 -2.4936 1.4288 9 6 6.8033 -2.9377 2.8652 10 7 6.6538 -1.7753 3.7539 11 6 7.6266 -1.4405 4.6245 12 8 8.6835 -2.0437 4.6174 13 6 7.4121 -0.3513 5.5786 14 1 6.5074 0.2367 5.5322 15 6 8.3798 -0.0718 6.5515 16 7 9.4742 -0.7837 6.6079 17 14 8.1056 1.3177 7.7694 18 1 8.6581 2.5792 7.2139 19 1 6.6502 1.4806 8.0151 20 1 8.7906 0.9979 9.0476 21 6 5.4120 -0.9915 3.6717 22 6 5.1728 -0.6205 2.1994 23 8 2.2873 -1.0891 -0.0064 24 1 -0.3633 0.0005 -1.0276 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 4.4157 1.3162 -0.0003 28 1 5.6082 -1.0438 -0.5152 29 1 4.5696 -2.4894 -0.5164 30 1 7.2725 -1.7910 1.1001 31 1 6.5046 -3.3636 0.7722 32 1 7.8229 -3.3178 2.9279 33 1 6.1027 -3.7181 3.1622 34 1 10.1444 -0.5903 7.2820 35 1 4.5778 -1.5872 4.0425 36 1 5.5113 -0.0844 4.2677 37 1 5.9571 0.0559 1.8598 38 1 4.2034 -0.1320 2.1012 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895065866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:53:04 Heat of formation + Delta-G solvation = -23.007521 kcal Electronic energy + Delta-G solvation = -21875.395333 eV Core-core repulsion = 18525.927488 eV Total energy + Delta-G solvation = -3349.467845 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.37292 -40.48665 -38.50161 -35.77847 -35.52310 -34.64284 -33.17060 -32.06211 -30.36673 -28.74567 -27.36947 -25.22723 -24.51642 -23.20346 -22.55368 -21.82555 -20.58251 -18.61398 -18.04051 -17.85710 -17.64680 -16.49499 -16.42392 -16.04272 -15.90385 -15.74483 -15.50013 -14.92850 -14.76808 -14.42505 -14.06626 -13.83326 -13.66129 -13.38226 -13.22710 -13.11191 -12.89421 -12.72344 -12.71429 -12.33353 -12.23127 -12.03290 -12.00653 -11.87288 -11.52418 -10.94767 -9.85103 -9.79514 -9.45895 -9.05584 -8.31022 -6.86107 0.38358 1.38909 1.39952 1.55208 1.61778 1.68493 2.22238 2.43801 2.69170 2.96496 3.16047 3.56886 3.67703 3.92020 3.98463 4.06506 4.11341 4.27103 4.34198 4.39234 4.49552 4.61868 4.66238 4.67082 4.70752 4.74589 4.83760 4.92124 5.02176 5.04945 5.13577 5.35728 5.38818 5.69158 5.85797 5.90586 6.10486 6.38739 6.71511 6.86164 7.38532 8.44026 8.65125 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.022855 B = 0.004269 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.820904 B = 6557.046871 C = 7448.341967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.187 3.813 3 N -0.516 5.516 4 C -0.043 4.043 5 C -0.044 4.044 6 C 0.140 3.860 7 N -0.538 5.538 8 C 0.060 3.940 9 C 0.120 3.880 10 N -0.647 5.647 11 C 0.542 3.458 12 O -0.631 6.631 13 C -0.571 4.571 14 H 0.091 0.909 15 C 0.030 3.970 16 N -0.822 5.822 17 Si 0.994 3.006 18 H -0.261 1.261 19 H -0.248 1.248 20 H -0.272 1.272 21 C 0.128 3.872 22 C 0.051 3.949 23 O -0.204 6.204 24 H 0.112 0.888 25 H 0.104 0.896 26 H 0.109 0.891 27 H 0.190 0.810 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.029 0.971 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.274 0.726 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.032 0.968 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.893 1.676 -13.915 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.246 5.246 4 C -0.182 4.182 5 C -0.097 4.097 6 C 0.014 3.986 7 N -0.263 5.263 8 C -0.068 4.068 9 C -0.003 4.003 10 N -0.384 5.384 11 C 0.348 3.652 12 O -0.518 6.518 13 C -0.607 4.607 14 H 0.109 0.891 15 C -0.185 4.185 16 N -0.451 5.451 17 Si 0.813 3.187 18 H -0.186 1.186 19 H -0.172 1.172 20 H -0.197 1.197 21 C 0.004 3.996 22 C -0.078 4.078 23 O -0.091 6.091 24 H 0.130 0.870 25 H 0.123 0.877 26 H 0.127 0.873 27 H 0.207 0.793 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.047 0.953 31 H 0.133 0.867 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.050 0.950 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.752 1.528 -13.658 21.668 hybrid contribution 1.301 0.332 0.345 1.387 sum -15.450 1.860 -13.312 20.479 Atomic orbital electron populations 1.20535 0.78216 1.06378 1.06200 1.27307 0.98054 0.78063 0.98566 1.70463 1.02551 1.31365 1.20228 1.23328 0.95457 0.93408 1.06032 1.23339 0.83905 0.95068 1.07396 1.20594 0.88929 0.99062 0.90059 1.62085 1.28810 1.25628 1.09823 1.22389 0.87978 0.99624 0.96842 1.21349 1.00719 0.88961 0.89307 1.48125 1.18720 1.30819 1.40772 1.18633 0.81818 0.84384 0.80362 1.90534 1.28393 1.58795 1.74083 1.21493 1.06701 1.17094 1.15386 0.89111 1.26965 0.93262 0.98991 0.99274 1.70181 1.07481 1.36750 1.30719 0.85072 0.80044 0.77065 0.76495 1.18610 1.17166 1.19715 1.21676 0.86017 0.96270 0.95642 1.22571 1.00889 0.90939 0.93370 1.84410 1.16787 1.38186 1.69763 0.86977 0.87705 0.87266 0.79325 0.89774 0.86831 0.95253 0.86740 0.92065 0.92135 0.91566 0.92522 0.89750 0.94992 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.60 10.51 71.24 0.75 0.15 16 2 C 0.19 4.00 8.34 88.35 0.74 4.73 16 3 N -0.52 -13.26 11.29 -303.81 -3.43 -16.69 16 4 C -0.04 -1.06 10.14 83.40 0.85 -0.21 16 5 C -0.04 -1.03 5.54 24.79 0.14 -0.89 16 6 C 0.14 2.94 5.82 85.56 0.50 3.44 16 7 N -0.54 -14.81 4.77 -898.87 -4.29 -19.10 16 8 C 0.06 1.76 5.58 86.38 0.48 2.24 16 9 C 0.12 4.75 6.61 86.35 0.57 5.32 16 10 N -0.65 -30.26 3.00 -822.13 -2.47 -32.73 16 11 C 0.54 31.98 7.63 86.36 0.66 32.64 16 12 O -0.63 -42.72 14.49 -4.31 -0.06 -42.78 16 13 C -0.57 -32.56 8.86 24.83 0.22 -32.34 16 14 H 0.09 4.66 5.74 -2.91 -0.02 4.64 16 15 C 0.03 1.69 5.50 85.30 0.47 2.16 16 16 N -0.82 -50.65 11.84 21.83 0.26 -50.39 16 17 Si 0.99 41.15 29.56 68.60 2.03 43.18 16 18 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 19 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 20 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 21 C 0.13 4.89 6.50 86.50 0.56 5.45 16 22 C 0.05 1.59 4.98 86.54 0.43 2.02 16 23 O -0.20 -4.90 10.78 -3.74 -0.04 -4.94 16 24 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 26 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.19 4.04 8.06 -2.91 -0.02 4.02 16 28 H 0.08 1.54 8.08 -2.38 -0.02 1.52 16 29 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.11 2.54 8.11 -2.39 -0.02 2.52 16 32 H 0.06 2.74 7.04 -2.39 -0.02 2.73 16 33 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.27 15.31 8.29 -92.71 -0.77 14.54 16 35 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.08 3.38 5.46 -2.39 -0.01 3.37 16 37 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 2.52 5.56 -2.39 -0.01 2.51 16 Total: -1.00 -80.37 314.53 -0.57 -80.94 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 1.07 Total: 17.81 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 6.36 Total: 24.72 kcal Atomic # 7 Polarization: -108.99 SS G_CDS: -9.93 Total: -118.92 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.10 Total: -47.72 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -80.37 -0.57 -80.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895065866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.931 kcal (2) G-P(sol) polarization free energy of solvation -80.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds