Wall clock time and date at job start Tue Mar 31 2020 00:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38045 * 126.29151 * 2 1 4 4 C 1.47434 * 126.41434 * 359.71264 * 3 2 1 5 5 O 1.21611 * 119.99825 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00031 * 180.02562 * 4 3 2 7 7 C 1.47061 * 136.05747 * 359.62375 * 6 4 3 8 8 C 1.53238 * 88.08228 * 207.20481 * 7 6 4 9 9 C 1.53004 * 114.32643 * 220.46979 * 8 7 6 10 10 O 1.42901 * 114.01542 * 87.72175 * 8 7 6 11 11 C 1.47066 * 136.05592 * 180.02562 * 6 4 3 12 12 C 1.41284 * 107.17463 * 179.97438 * 3 2 1 13 13 N 1.30451 * 108.02018 * 0.02562 * 12 3 2 14 14 N 1.34258 * 126.29173 * 179.97438 * 2 1 3 15 15 C 1.46492 * 125.75615 * 0.04979 * 14 2 1 16 16 C 1.50700 * 109.47260 * 89.99308 * 15 14 2 17 17 H 1.07994 * 119.99866 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99697 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00263 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99546 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46954 * 60.00426 * 20 18 16 22 22 H 1.48504 * 109.46831 * 179.97438 * 20 18 16 23 23 H 1.48490 * 109.47354 * 300.00002 * 20 18 16 24 24 H 1.09001 * 109.46968 * 90.00141 * 1 2 3 25 25 H 1.08999 * 109.47400 * 209.99751 * 1 2 3 26 26 H 1.09004 * 109.47597 * 330.00452 * 1 2 3 27 27 H 1.08998 * 113.46816 * 321.93765 * 7 6 4 28 28 H 1.09000 * 113.46690 * 92.37996 * 7 6 4 29 29 H 1.08996 * 109.46929 * 153.76449 * 9 8 7 30 30 H 1.09003 * 109.46928 * 273.76144 * 9 8 7 31 31 H 1.08993 * 109.47266 * 33.75811 * 9 8 7 32 32 H 0.96695 * 114.00585 * 86.38432 * 10 8 7 33 33 H 1.09003 * 113.47001 * 267.61973 * 11 6 4 34 34 H 1.09005 * 113.46986 * 38.05844 * 11 6 4 35 35 H 1.08001 * 125.99432 * 179.97438 * 12 3 2 36 36 H 1.09003 * 109.47266 * 210.00022 * 15 14 2 37 37 H 1.09004 * 109.46784 * 329.99622 * 15 14 2 38 38 H 0.96997 * 119.99635 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0060 5 8 0.6995 2.7878 -0.0120 6 7 2.7999 3.5107 -0.0057 7 6 4.2679 3.5967 0.0060 8 6 4.1312 4.9588 0.6948 9 6 5.1138 6.0195 0.1945 10 8 4.0527 4.8846 2.1197 11 6 2.7681 4.9810 -0.0099 12 6 3.6590 0.6500 0.0006 13 7 3.6340 -0.6543 0.0004 14 7 2.3017 -1.0821 0.0005 15 6 1.8501 -2.4757 0.0001 16 6 1.6961 -2.9535 -1.4209 17 1 1.9133 -2.2859 -2.2415 18 6 1.2779 -4.2429 -1.6731 19 7 1.0130 -5.0557 -0.6737 20 14 1.0877 -4.8353 -3.4345 21 1 2.3947 -4.7389 -4.1330 22 1 0.6299 -6.2480 -3.4348 23 1 0.0881 -3.9904 -4.1357 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 4.7420 2.8410 0.6322 28 1 4.7072 3.6560 -0.9898 29 1 4.6890 7.0110 0.3512 30 1 6.0511 5.9347 0.7444 31 1 5.3014 5.8684 -0.8685 32 1 4.9130 4.8708 2.5609 33 1 2.8035 5.4132 -1.0100 34 1 1.9696 5.3998 0.6027 35 1 4.5449 1.2677 0.0004 36 1 2.5844 -3.0958 0.5144 37 1 0.8911 -2.5471 0.5133 38 1 0.7191 -5.9629 -0.8512 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897694023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:17 Heat of formation + Delta-G solvation = 27.333562 kcal Electronic energy + Delta-G solvation = -21670.600682 eV Core-core repulsion = 18323.315791 eV Total energy + Delta-G solvation = -3347.284891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.97889 -40.25450 -37.73307 -35.37580 -33.87632 -32.14119 -31.26977 -30.81876 -28.08371 -26.91238 -26.31655 -25.91184 -23.35663 -21.83685 -20.56040 -19.58754 -18.53400 -16.93117 -16.90310 -16.67592 -15.85575 -15.48755 -15.23730 -14.77805 -14.44538 -14.36418 -14.08573 -13.50239 -13.09661 -12.93302 -12.61657 -12.56636 -12.38480 -12.23699 -12.11174 -12.01149 -11.65308 -11.44853 -11.12870 -11.03626 -10.85942 -10.36834 -10.21039 -10.07631 -9.94290 -9.34375 -8.69775 -8.65982 -8.54755 -7.87399 -6.32531 -4.40438 2.21198 2.80666 2.90928 3.20655 3.24473 3.27352 3.42974 3.61403 3.91106 4.00955 4.25041 4.54140 4.65917 4.93528 5.03176 5.16075 5.20538 5.24953 5.34108 5.40750 5.47936 5.56931 5.59321 5.70234 5.72901 5.87125 6.10389 6.17922 6.48754 6.60606 6.82492 6.92402 7.18560 7.34961 7.57163 7.78370 7.80573 7.91425 8.38757 8.60856 8.65449 9.26256 10.75677 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.033082 B = 0.003783 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.173600 B = 7399.823132 C = 7545.980064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 C -0.325 4.325 4 C 0.635 3.365 5 O -0.553 6.553 6 N -0.640 5.640 7 C 0.071 3.929 8 C 0.087 3.913 9 C -0.165 4.165 10 O -0.531 6.531 11 C 0.118 3.882 12 C 0.054 3.946 13 N -0.297 5.297 14 N -0.313 5.313 15 C 0.251 3.749 16 C -0.541 4.541 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.890 5.890 20 Si 0.909 3.091 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.381 0.619 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.176 0.824 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.710 19.120 2.241 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.341 4.341 4 C 0.430 3.570 5 O -0.432 6.432 6 N -0.375 5.375 7 C -0.053 4.053 8 C 0.045 3.955 9 C -0.223 4.223 10 O -0.337 6.337 11 C -0.005 4.005 12 C -0.132 4.132 13 N -0.117 5.117 14 N -0.090 5.090 15 C 0.134 3.866 16 C -0.579 4.579 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.111 0.889 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.229 0.771 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.193 0.807 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.871 17.584 2.167 19.003 hybrid contribution 0.246 0.190 -0.901 0.953 sum 7.117 17.775 1.267 19.188 Atomic orbital electron populations 1.20570 0.86760 1.03800 1.03934 1.21453 0.94960 0.86472 0.94359 1.19546 0.93208 0.91969 1.29332 1.16797 0.83532 0.82719 0.73988 1.90701 1.16001 1.83917 1.52614 1.48982 1.06934 1.06071 1.75560 1.23819 0.82898 0.97560 1.01021 1.22416 0.96628 0.94233 0.82219 1.22192 0.98721 0.98992 1.02411 1.86586 1.34441 1.96430 1.16218 1.22956 0.96183 0.81782 0.99593 1.23943 0.96546 0.92511 1.00228 1.77133 0.98652 1.12248 1.23670 1.49356 1.02480 1.08262 1.48939 1.19849 0.96419 0.70880 0.99420 1.21213 1.47524 0.98165 0.90997 0.91727 1.24924 0.94426 0.95972 0.98315 1.69905 1.44414 1.07218 1.31192 0.86373 0.78868 0.77745 0.83488 1.19911 1.20853 1.19841 0.89815 0.90787 0.88871 0.89623 0.89004 0.91118 0.91491 0.90674 0.77129 0.88747 0.89835 0.80722 0.92508 0.92541 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.77 9.56 36.00 0.34 -1.43 16 2 C 0.16 3.55 7.01 -81.60 -0.57 2.98 16 3 C -0.33 -6.48 6.13 -105.07 -0.64 -7.12 16 4 C 0.64 11.97 8.07 -12.52 -0.10 11.87 16 5 O -0.55 -11.77 15.62 5.27 0.08 -11.69 16 6 N -0.64 -9.22 3.69 -186.68 -0.69 -9.91 16 7 C 0.07 0.70 6.50 -8.65 -0.06 0.64 16 8 C 0.09 0.72 2.03 -90.25 -0.18 0.54 16 9 C -0.17 -0.79 9.54 37.16 0.35 -0.43 16 10 O -0.53 -5.09 13.55 -35.23 -0.48 -5.57 16 11 C 0.12 1.28 8.05 -8.52 -0.07 1.22 16 12 C 0.05 1.01 11.13 -16.98 -0.19 0.83 16 13 N -0.30 -6.64 12.50 30.86 0.39 -6.25 16 14 N -0.31 -7.35 3.56 -57.78 -0.21 -7.56 16 15 C 0.25 6.40 5.97 -5.20 -0.03 6.37 16 16 C -0.54 -14.80 9.39 -34.44 -0.32 -15.12 16 17 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -24.85 13.29 55.43 0.74 -24.12 16 20 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.07 1.36 7.05 -51.93 -0.37 1.00 16 26 H 0.09 1.73 6.51 -51.93 -0.34 1.39 16 27 H 0.09 0.83 6.18 -51.93 -0.32 0.51 16 28 H 0.09 0.71 7.94 -51.93 -0.41 0.30 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.30 7.90 -51.93 -0.41 -0.11 16 32 H 0.38 1.86 9.04 45.56 0.41 2.27 16 33 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.18 2.48 5.23 -52.49 -0.27 2.21 16 36 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 37 H 0.06 1.43 7.02 -51.93 -0.36 1.06 16 38 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -34.14 323.68 -6.03 -40.18 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.15 Total: 1.99 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.57 Total: 2.07 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: 0.23 Total: -47.83 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.40 Total: -17.26 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.14 -6.03 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897694023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.509 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds