Wall clock time and date at job start Tue Mar 31 2020 00:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38048 * 126.28614 * 2 1 4 4 C 1.47431 * 126.41611 * 0.02562 * 3 2 1 5 5 O 1.21595 * 120.00166 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99641 * 179.97438 * 4 3 2 7 7 O 1.41599 * 119.99737 * 179.97438 * 6 4 3 8 8 C 1.42906 * 114.00082 * 180.02562 * 7 6 4 9 9 C 1.53785 * 113.61231 * 254.13967 * 8 7 6 10 10 C 1.53959 * 87.01705 * 220.04411 * 9 8 7 11 11 C 1.53774 * 113.61614 * 156.53169 * 8 7 6 12 12 C 1.41291 * 107.16575 * 179.97438 * 3 2 1 13 13 N 1.30446 * 108.02688 * 0.02562 * 12 3 2 14 14 N 1.34258 * 126.29479 * 179.69357 * 2 1 3 15 15 C 1.46501 * 125.75263 * 359.97438 * 14 2 1 16 16 C 1.50702 * 109.46672 * 90.00199 * 15 14 2 17 17 H 1.07994 * 120.00146 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99956 * 179.97438 * 16 15 14 19 19 N 1.31520 * 119.99754 * 0.02562 * 18 16 15 20 20 Si 1.86793 * 120.00230 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47264 * 0.02562 * 20 18 16 22 22 H 1.48506 * 109.47172 * 120.00374 * 20 18 16 23 23 H 1.48504 * 109.47421 * 240.00035 * 20 18 16 24 24 H 1.08999 * 109.46995 * 90.02312 * 1 2 3 25 25 H 1.08994 * 109.46790 * 210.01999 * 1 2 3 26 26 H 1.08997 * 109.47305 * 330.02440 * 1 2 3 27 27 H 0.97005 * 120.00604 * 0.02562 * 6 4 3 28 28 H 1.09005 * 112.84930 * 25.33026 * 8 7 6 29 29 H 1.09000 * 113.61529 * 334.56498 * 9 8 7 30 30 H 1.09002 * 113.61270 * 105.47120 * 9 8 7 31 31 H 1.09000 * 113.53998 * 270.81181 * 10 9 8 32 32 H 1.08993 * 113.66597 * 139.93127 * 10 9 8 33 33 H 1.09008 * 113.61435 * 254.53004 * 11 8 7 34 34 H 1.08999 * 113.61772 * 25.34718 * 11 8 7 35 35 H 1.08003 * 125.98623 * 179.97438 * 12 3 2 36 36 H 1.08994 * 109.47344 * 210.00108 * 15 14 2 37 37 H 1.09008 * 109.47274 * 330.00735 * 15 14 2 38 38 H 0.97000 * 119.99930 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1128 0.0000 4 6 1.8857 2.5204 0.0005 5 8 0.6995 2.7878 0.0006 6 7 2.7998 3.5108 0.0010 7 8 2.3788 4.8627 0.0009 8 6 3.4524 5.8059 0.0009 9 6 3.6611 6.5018 1.3563 10 6 3.9175 7.7953 0.5618 11 6 3.0622 7.1834 -0.5603 12 6 3.6590 0.6500 0.0006 13 7 3.6341 -0.6543 0.0004 14 7 2.3018 -1.0821 0.0058 15 6 1.8502 -2.4757 0.0138 16 6 1.6950 -2.9615 -1.4043 17 1 1.9114 -2.2986 -2.2290 18 6 1.2776 -4.2526 -1.6490 19 7 1.0145 -5.0600 -0.6447 20 14 1.0858 -4.8550 -3.4067 21 1 1.4420 -3.7617 -4.3463 22 1 1.9853 -6.0147 -3.6335 23 1 -0.3219 -5.2679 -3.6377 24 1 -0.3633 -0.0004 -1.0277 25 1 -0.3633 -0.8898 0.5141 26 1 -0.3634 0.8902 0.5134 27 1 3.7461 3.2975 0.0006 28 1 4.3696 5.4031 -0.4289 29 1 2.7620 6.5381 1.9715 30 1 4.5340 6.1429 1.9015 31 1 4.9625 7.9371 0.2863 32 1 3.4740 8.6821 1.0146 33 1 3.4524 7.3740 -1.5601 34 1 1.9989 7.4059 -0.4714 35 1 4.5449 1.2678 0.0004 36 1 2.5850 -3.0928 0.5308 37 1 0.8916 -2.5442 0.5283 38 1 0.7205 -5.9683 -0.8168 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897811869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:42 Heat of formation + Delta-G solvation = 35.094089 kcal Electronic energy + Delta-G solvation = -21065.158983 eV Core-core repulsion = 17718.210613 eV Total energy + Delta-G solvation = -3346.948370 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.34716 -40.37484 -39.49515 -36.80517 -35.82222 -34.02330 -33.07330 -32.36680 -29.07936 -28.15499 -26.61125 -25.76990 -25.28198 -23.64914 -21.61566 -21.00931 -20.25899 -19.21819 -18.86449 -18.33610 -16.91426 -16.58261 -16.41592 -16.29915 -16.00196 -15.72048 -15.39416 -14.81996 -14.72313 -14.24664 -14.08914 -13.69882 -13.58268 -13.41961 -13.29729 -13.09523 -12.97199 -12.70444 -12.55461 -12.32278 -12.16867 -11.83332 -11.77582 -11.45604 -11.25476 -10.88553 -10.75610 -10.29282 -9.93732 -9.46995 -8.37598 -6.53547 0.62780 0.90826 1.30009 1.37176 1.39589 1.50987 1.73857 2.33184 2.48013 2.94935 3.50862 3.57989 3.63985 3.69717 3.71084 3.89721 3.93160 4.02194 4.19375 4.45026 4.52000 4.62308 4.78464 4.80093 4.81271 4.89527 5.01035 5.05397 5.07487 5.13623 5.14315 5.38140 5.50057 5.61464 5.75120 5.92364 6.00988 6.42870 6.55356 6.80446 7.17630 7.37442 8.70625 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.003151 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.756574 B = 8885.309947 C = 8925.847772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.153 3.847 3 C -0.322 4.322 4 C 0.617 3.383 5 O -0.576 6.576 6 N -0.583 5.583 7 O -0.158 6.158 8 C 0.019 3.981 9 C -0.161 4.161 10 C -0.127 4.127 11 C -0.131 4.131 12 C 0.082 3.918 13 N -0.331 5.331 14 N -0.336 5.336 15 C 0.266 3.734 16 C -0.555 4.555 17 H 0.053 0.947 18 C 0.024 3.976 19 N -0.917 5.917 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.270 1.270 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.423 0.577 28 H 0.126 0.874 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.232 0.768 36 H 0.034 0.966 37 H 0.052 0.948 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.323 21.356 1.803 22.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.017 3.983 3 C -0.338 4.338 4 C 0.407 3.593 5 O -0.456 6.456 6 N -0.286 5.286 7 O -0.162 6.162 8 C -0.039 4.039 9 C -0.199 4.199 10 C -0.164 4.164 11 C -0.169 4.169 12 C -0.105 4.105 13 N -0.150 5.150 14 N -0.112 5.112 15 C 0.147 3.853 16 C -0.593 4.593 17 H 0.071 0.929 18 C -0.178 4.178 19 N -0.555 5.555 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.199 1.199 23 H -0.195 1.195 24 H 0.103 0.897 25 H 0.093 0.907 26 H 0.118 0.882 27 H 0.266 0.734 28 H 0.144 0.856 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.248 0.752 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.929 20.178 1.873 21.417 hybrid contribution -0.076 -0.032 -0.657 0.663 sum 6.853 20.146 1.215 21.314 Atomic orbital electron populations 1.20590 0.85835 1.04168 1.04142 1.21874 0.95924 0.86563 0.93957 1.19472 0.93742 0.91043 1.29524 1.17065 0.84678 0.82621 0.74944 1.90694 1.18087 1.83961 1.52811 1.47021 1.09193 0.94445 1.77917 1.90617 1.27528 1.01487 1.96582 1.24799 0.91930 0.88187 0.99007 1.23575 1.02665 0.97043 0.96584 1.22690 1.01110 0.96853 0.95793 1.23215 1.01486 0.91793 1.00436 1.24569 0.97344 0.91705 0.96872 1.77111 0.98222 1.14249 1.25459 1.49112 1.03368 1.07733 1.51027 1.19419 0.95482 0.72134 0.98220 1.21427 1.47829 0.98443 0.91589 0.92919 1.25719 0.93851 0.96010 1.02172 1.70001 1.44908 1.07753 1.32812 0.85299 0.78399 0.78192 0.78559 1.19683 1.19867 1.19457 0.89657 0.90657 0.88184 0.73382 0.85627 0.90645 0.89688 0.87814 0.89853 0.89158 0.90179 0.75196 0.94756 0.92977 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.31 9.57 71.24 0.68 -2.63 16 2 C 0.15 6.26 7.01 42.14 0.30 6.55 16 3 C -0.32 -11.40 6.13 -20.15 -0.12 -11.53 16 4 C 0.62 21.07 7.96 86.67 0.69 21.76 16 5 O -0.58 -23.91 15.24 13.34 0.20 -23.71 16 6 N -0.58 -14.77 6.38 -175.90 -1.12 -15.89 16 7 O -0.16 -4.14 11.12 -21.43 -0.24 -4.38 16 8 C 0.02 0.29 4.50 31.12 0.14 0.43 16 9 C -0.16 -2.14 7.93 31.18 0.25 -1.90 16 10 C -0.13 -1.19 8.09 31.18 0.25 -0.94 16 11 C -0.13 -1.72 7.91 31.12 0.25 -1.47 16 12 C 0.08 2.59 11.50 85.65 0.99 3.57 16 13 N -0.33 -13.75 12.50 -56.27 -0.70 -14.45 16 14 N -0.34 -15.23 3.56 -336.68 -1.20 -16.43 16 15 C 0.27 13.54 5.97 85.63 0.51 14.05 16 16 C -0.55 -30.26 9.39 25.60 0.24 -30.02 16 17 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 18 C 0.02 1.28 5.46 84.65 0.46 1.74 16 19 N -0.92 -50.91 13.29 21.45 0.28 -50.63 16 20 Si 0.97 42.43 29.54 68.60 2.03 44.45 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 24 H 0.08 3.12 8.14 -2.39 -0.02 3.11 16 25 H 0.07 2.73 7.04 -2.39 -0.02 2.71 16 26 H 0.10 3.58 6.50 -2.39 -0.02 3.56 16 27 H 0.42 7.04 7.34 -92.70 -0.68 6.36 16 28 H 0.13 1.31 7.90 -2.38 -0.02 1.29 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.94 8.14 -2.38 -0.02 0.93 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.23 4.25 7.50 -2.91 -0.02 4.23 16 36 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 2.66 7.01 -2.38 -0.02 2.64 16 38 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -70.57 328.91 4.28 -66.28 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.40 Total: 15.13 kcal Atomic # 6 Polarization: -5.02 SS G_CDS: 4.63 Total: -0.39 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -2.74 Total: -97.40 kcal Atomic # 8 Polarization: -28.05 SS G_CDS: -0.03 Total: -28.08 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -70.57 4.28 -66.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897811869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.378 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds