Wall clock time and date at job start Tue Mar 31 2020 00:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50710 * 119.99746 * 2 1 4 4 C 1.52998 * 109.46877 * 124.99870 * 3 2 1 5 5 O 1.42907 * 109.46893 * 179.97438 * 4 3 2 6 6 N 1.41591 * 114.00107 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00046 * 180.02562 * 6 5 4 8 8 O 1.21603 * 120.00160 * 0.02562 * 7 6 5 9 9 C 1.47429 * 120.00013 * 179.97438 * 7 6 5 10 10 C 1.41293 * 126.41485 * 0.02562 * 9 7 6 11 11 N 1.30448 * 108.02361 * 179.71995 * 10 9 7 12 12 N 1.39944 * 108.89724 * 0.40720 * 11 10 9 13 13 C 1.46491 * 125.75406 * 179.85047 * 12 11 10 14 14 C 1.50702 * 109.46957 * 269.68786 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48504 * 109.47196 * 60.00645 * 18 16 14 20 20 H 1.48504 * 109.46887 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47679 * 300.00280 * 18 16 14 22 22 C 1.34263 * 108.48668 * 359.58371 * 12 11 10 23 23 C 1.50694 * 126.28562 * 180.22136 * 22 12 11 24 24 H 1.08001 * 119.99700 * 179.97438 * 1 2 3 25 25 H 1.08000 * 120.00428 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00428 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.46906 * 4.99910 * 3 2 1 28 28 H 1.09000 * 109.46655 * 244.99521 * 3 2 1 29 29 H 1.09000 * 109.47320 * 60.00294 * 4 3 2 30 30 H 1.08996 * 109.46966 * 299.99739 * 4 3 2 31 31 H 0.97008 * 120.00292 * 359.97438 * 6 5 4 32 32 H 1.07999 * 125.98923 * 359.95357 * 10 9 7 33 33 H 1.09004 * 109.47166 * 149.69052 * 13 12 11 34 34 H 1.08994 * 109.47507 * 29.68759 * 13 12 11 35 35 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 36 36 H 1.08995 * 109.47253 * 90.00157 * 23 22 12 37 37 H 1.09009 * 109.47074 * 210.00037 * 23 22 12 38 38 H 1.09002 * 109.47486 * 330.00194 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0349 1.3332 1.1816 5 8 3.7498 2.5706 1.1813 6 7 4.6807 2.6982 2.2405 7 6 5.4209 3.8186 2.3559 8 8 5.2889 4.7201 1.5505 9 6 6.3898 3.9517 3.4591 10 6 6.6517 2.9950 4.4653 11 7 7.5742 3.4779 5.2511 12 7 7.9346 4.7518 4.7975 13 6 8.9366 5.6270 5.4107 14 6 8.2727 6.5094 6.4362 15 1 7.2107 6.4262 6.6139 16 6 9.0223 7.4185 7.1523 17 7 10.3157 7.5195 6.9363 18 14 8.2007 8.5068 8.4290 19 1 7.5732 7.6577 9.4733 20 1 9.2173 9.3906 9.0540 21 1 7.1584 9.3377 7.7744 22 6 7.2113 5.0341 3.7021 23 6 7.2828 6.3002 2.8881 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3584 2.1317 0.0896 28 1 2.6213 1.4026 -0.9314 29 1 3.7399 0.5067 1.0921 30 1 2.4771 1.2357 2.1130 31 1 4.7853 1.9795 2.8837 32 1 6.1748 2.0311 4.5642 33 1 9.3970 6.2470 4.6414 34 1 9.7019 5.0201 5.8944 35 1 10.8429 8.1594 7.4398 36 1 8.0290 6.1851 2.1020 37 1 6.3096 6.4988 2.4389 38 1 7.5614 7.1326 3.5343 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898939215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:57:56 Heat of formation + Delta-G solvation = 49.940140 kcal Electronic energy + Delta-G solvation = -20670.508576 eV Core-core repulsion = 17324.203979 eV Total energy + Delta-G solvation = -3346.304597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.82914 -38.82573 -37.37295 -35.31289 -33.95928 -32.50717 -31.85550 -31.03798 -29.26240 -27.20879 -26.60126 -23.60655 -23.36200 -22.25800 -20.37968 -19.90233 -19.19043 -17.88206 -17.03137 -16.74375 -16.29780 -15.38671 -15.14622 -14.73654 -14.66692 -14.44414 -13.96444 -13.88295 -13.38530 -13.29467 -12.60067 -12.50838 -12.41200 -12.11221 -12.01862 -11.81589 -11.51696 -11.49574 -11.15265 -10.93813 -10.89008 -10.38355 -10.24238 -9.98261 -9.82706 -9.46958 -8.80904 -8.72144 -8.64005 -7.99808 -6.35020 -4.43248 1.70091 2.08119 2.13539 2.73148 3.19735 3.23789 3.24676 3.35128 3.86715 4.23271 4.29315 4.53968 4.73935 4.81016 4.89686 4.97015 5.03873 5.05636 5.19836 5.40518 5.45449 5.53497 5.65620 5.71517 5.84859 6.09130 6.19179 6.31305 6.48384 6.52189 6.73064 6.86890 6.92729 7.09101 7.51964 7.55133 7.73813 7.75455 8.30965 8.60628 8.62791 9.23859 10.73084 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.035264 B = 0.002874 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 793.809131 B = 9738.767167 C = 9789.690843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.154 4.154 3 C -0.087 4.087 4 C 0.036 3.964 5 O -0.146 6.146 6 N -0.601 5.601 7 C 0.617 3.383 8 O -0.537 6.537 9 C -0.324 4.324 10 C 0.057 3.943 11 N -0.292 5.292 12 N -0.312 5.312 13 C 0.251 3.749 14 C -0.543 4.543 15 H 0.065 0.935 16 C 0.068 3.932 17 N -0.889 5.889 18 Si 0.909 3.091 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.273 1.273 22 C 0.173 3.827 23 C -0.100 4.100 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.404 0.596 32 H 0.176 0.824 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.270 0.730 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.924 -12.745 -10.495 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.172 4.172 3 C -0.126 4.126 4 C -0.041 4.041 5 O -0.150 6.150 6 N -0.304 5.304 7 C 0.408 3.592 8 O -0.413 6.413 9 C -0.340 4.340 10 C -0.131 4.131 11 N -0.112 5.112 12 N -0.089 5.089 13 C 0.134 3.866 14 C -0.581 4.581 15 H 0.084 0.916 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.735 3.265 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C 0.035 3.965 23 C -0.158 4.158 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.244 0.756 32 H 0.193 0.807 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.997 -11.958 -10.016 19.679 hybrid contribution -0.960 -0.128 0.480 1.081 sum -12.957 -12.086 -9.537 20.122 Atomic orbital electron populations 1.23937 0.95868 1.02210 1.00122 1.22753 0.95990 0.97757 1.00741 1.20583 0.97658 0.96420 0.97925 1.22896 0.94468 0.87157 0.99600 1.90541 1.50374 1.36808 1.37302 1.47333 1.37476 1.20871 1.24720 1.17233 0.78257 0.79858 0.83867 1.90718 1.67991 1.39260 1.43315 1.19299 1.10766 0.99508 1.04469 1.23737 0.97028 0.99197 0.93112 1.77152 1.16977 0.94602 1.22463 1.49395 1.29318 1.11986 1.18170 1.19885 0.84989 0.87367 0.94369 1.21216 0.95587 1.19929 1.21349 0.91642 1.24926 0.94816 0.96867 0.97020 1.69905 1.05488 1.35991 1.41232 0.86371 0.79059 0.79966 0.81076 1.19900 1.20871 1.19801 1.21423 0.90549 0.95841 0.88659 1.20657 1.04740 0.92051 0.98389 0.88167 0.88293 0.86992 0.90175 0.89632 0.92050 0.92046 0.75593 0.80686 0.92415 0.92382 0.92019 0.90264 0.88494 0.89672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.10 14.32 29.02 0.42 -0.68 16 2 C -0.15 -0.99 9.52 -36.02 -0.34 -1.33 16 3 C -0.09 -0.68 6.03 -27.88 -0.17 -0.85 16 4 C 0.04 0.32 6.21 37.16 0.23 0.55 16 5 O -0.15 -2.01 11.11 -29.61 -0.33 -2.34 16 6 N -0.60 -8.29 6.38 30.43 0.19 -8.09 16 7 C 0.62 10.88 7.96 -12.52 -0.10 10.78 16 8 O -0.54 -11.15 15.24 -12.87 -0.20 -11.34 16 9 C -0.32 -5.90 6.13 -105.07 -0.64 -6.55 16 10 C 0.06 0.95 11.50 -16.98 -0.20 0.76 16 11 N -0.29 -6.13 12.50 30.86 0.39 -5.74 16 12 N -0.31 -6.93 3.56 -57.78 -0.21 -7.13 16 13 C 0.25 6.14 5.78 -5.20 -0.03 6.11 16 14 C -0.54 -14.42 9.39 -34.44 -0.32 -14.74 16 15 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 16 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 17 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 18 Si 0.91 20.64 29.54 -169.99 -5.02 15.62 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 C 0.17 3.49 7.01 -81.60 -0.57 2.92 16 23 C -0.10 -1.81 9.34 36.00 0.34 -1.47 16 24 H 0.10 0.48 8.06 -52.49 -0.42 0.05 16 25 H 0.10 0.57 7.84 -52.49 -0.41 0.16 16 26 H 0.11 0.59 8.06 -52.49 -0.42 0.17 16 27 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 28 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.40 4.07 7.50 -40.82 -0.31 3.77 16 32 H 0.18 2.01 7.50 -52.49 -0.39 1.62 16 33 H 0.06 1.40 7.62 -51.93 -0.40 1.01 16 34 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.10 1.74 6.50 -51.92 -0.34 1.41 16 38 H 0.08 1.58 7.70 -51.93 -0.40 1.18 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -31.88 336.98 -6.00 -37.88 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -5.15 Total: 2.48 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -1.49 Total: -2.80 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 1.11 Total: -44.57 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.53 Total: -13.68 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.88 -6.00 -37.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898939215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.817 kcal (2) G-P(sol) polarization free energy of solvation -31.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds