Wall clock time and date at job start Tue Mar 31 2020 00:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38037 * 126.29162 * 2 1 4 4 C 1.47428 * 126.41654 * 0.02562 * 3 2 1 5 5 O 1.21599 * 120.00010 * 0.02851 * 4 3 2 6 6 N 1.34774 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99990 * 180.02562 * 6 4 3 8 8 C 1.52999 * 113.00124 * 48.17636 * 7 6 4 9 9 C 1.54033 * 113.81784 * 276.19029 * 7 6 4 10 10 O 1.44184 * 85.51930 * 223.19687 * 9 7 6 11 11 C 1.44177 * 93.33846 * 24.18970 * 10 9 7 12 12 C 1.41295 * 107.17157 * 180.02562 * 3 2 1 13 13 N 1.30444 * 108.01985 * 0.02562 * 12 3 2 14 14 N 1.34257 * 126.28756 * 180.02562 * 2 1 3 15 15 C 1.46501 * 125.75897 * 359.94852 * 14 2 1 16 16 C 1.50702 * 109.46841 * 90.00449 * 15 14 2 17 17 H 1.08004 * 119.99932 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99959 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99949 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47388 * 89.99681 * 20 18 16 22 22 H 1.48501 * 109.47366 * 209.99944 * 20 18 16 23 23 H 1.48507 * 109.46968 * 329.99570 * 20 18 16 24 24 H 1.08998 * 109.47277 * 89.97031 * 1 2 3 25 25 H 1.09002 * 109.47256 * 209.97767 * 1 2 3 26 26 H 1.09001 * 109.46740 * 329.96807 * 1 2 3 27 27 H 0.96996 * 120.00519 * 0.02562 * 6 4 3 28 28 H 1.09000 * 109.47140 * 69.66747 * 8 7 6 29 29 H 1.09000 * 109.47282 * 189.67098 * 8 7 6 30 30 H 1.09007 * 109.47013 * 309.66574 * 8 7 6 31 31 H 1.09003 * 113.86525 * 337.34247 * 9 7 6 32 32 H 1.08994 * 113.87049 * 109.04689 * 9 7 6 33 33 H 1.08993 * 113.86319 * 221.66236 * 11 10 9 34 34 H 1.09001 * 113.97755 * 89.96905 * 11 10 9 35 35 H 1.08002 * 125.98990 * 179.73424 * 12 3 2 36 36 H 1.08993 * 109.47679 * 210.00172 * 15 14 2 37 37 H 1.08999 * 109.46901 * 330.00887 * 15 14 2 38 38 H 0.96996 * 119.99779 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 0.0005 5 8 0.6997 2.7877 0.0016 6 7 2.8000 3.5106 -0.0001 7 6 2.3645 4.9094 0.0010 8 6 1.2913 5.2006 1.0519 9 6 2.0330 5.4587 -1.3993 10 8 2.7502 6.6381 -0.9825 11 6 3.5251 5.9222 0.0002 12 6 3.6591 0.6498 -0.0006 13 7 3.6340 -0.6544 -0.0015 14 7 2.3016 -1.0822 -0.0005 15 6 1.8500 -2.4759 0.0000 16 6 1.6943 -2.9538 -1.4207 17 1 1.9105 -2.2863 -2.2418 18 6 1.2758 -4.2432 -1.6723 19 7 1.0130 -5.0562 -0.6725 20 14 1.0834 -4.8359 -3.4333 21 1 2.3641 -5.4251 -3.9000 22 1 0.0137 -5.8641 -3.4956 23 1 0.7194 -3.6896 -4.3044 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5143 27 1 3.7462 3.2973 -0.0012 28 1 1.7317 5.1414 2.0471 29 1 0.8880 6.2005 0.8919 30 1 0.4894 4.4673 0.9651 31 1 2.5140 4.9143 -2.2119 32 1 0.9690 5.6259 -1.5670 33 1 3.6445 6.4568 0.9424 34 1 4.4623 5.5186 -0.3830 35 1 4.5450 1.2676 -0.0048 36 1 2.5849 -3.0958 0.5133 37 1 0.8917 -2.5471 0.5144 38 1 0.7189 -5.9634 -0.8495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899165756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:54 Heat of formation + Delta-G solvation = 19.948878 kcal Electronic energy + Delta-G solvation = -21663.854199 eV Core-core repulsion = 18316.249083 eV Total energy + Delta-G solvation = -3347.605115 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.20002 -40.63800 -38.42824 -34.30135 -33.86995 -32.13287 -31.37654 -30.30571 -27.34778 -26.88407 -26.68681 -26.19264 -23.53755 -22.29748 -20.29862 -19.46881 -18.92581 -17.41637 -16.92904 -16.73015 -16.22320 -15.86159 -15.12675 -14.83439 -14.54607 -14.28412 -13.93125 -13.65543 -13.42339 -12.79160 -12.68022 -12.48198 -12.32767 -12.19744 -12.12554 -11.81239 -11.65408 -11.49995 -11.19308 -11.06678 -10.90986 -10.38263 -10.19225 -10.01740 -9.96491 -9.26788 -9.02331 -8.73514 -8.63058 -7.96399 -6.36103 -4.44089 2.12295 2.74507 3.07624 3.16705 3.23252 3.27451 3.39132 3.50034 3.74647 4.07217 4.22233 4.62383 4.84975 4.97191 5.04781 5.06652 5.20947 5.30055 5.45116 5.59572 5.62529 5.67954 5.72407 5.75136 5.87533 5.88938 6.09178 6.25970 6.40664 6.50619 6.57510 6.76131 6.87667 7.11714 7.53125 7.66198 7.74138 7.75503 8.33398 8.53810 8.61461 9.23020 10.72150 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032109 B = 0.003673 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.820883 B = 7621.492161 C = 7686.894274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.167 3.833 3 C -0.335 4.335 4 C 0.608 3.392 5 O -0.549 6.549 6 N -0.727 5.727 7 C 0.118 3.882 8 C -0.156 4.156 9 C 0.030 3.970 10 O -0.376 6.376 11 C 0.034 3.966 12 C 0.057 3.943 13 N -0.295 5.295 14 N -0.313 5.313 15 C 0.251 3.749 16 C -0.541 4.541 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.271 1.271 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.400 0.600 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.175 0.825 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.821 17.202 2.804 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.029 3.971 3 C -0.351 4.351 4 C 0.399 3.601 5 O -0.429 6.429 6 N -0.381 5.381 7 C 0.031 3.969 8 C -0.214 4.214 9 C -0.048 4.048 10 O -0.293 6.293 11 C -0.043 4.043 12 C -0.130 4.130 13 N -0.115 5.115 14 N -0.090 5.090 15 C 0.134 3.866 16 C -0.579 4.579 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.196 1.196 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.112 0.888 27 H 0.235 0.765 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.192 0.808 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.585 16.216 2.780 16.654 hybrid contribution 0.173 -0.073 -0.931 0.949 sum 2.758 16.143 1.849 16.481 Atomic orbital electron populations 1.20574 0.86772 1.03798 1.03943 1.21489 0.94979 0.86527 0.94072 1.19677 0.93144 0.92480 1.29784 1.17324 0.85018 0.83812 0.73949 1.90606 1.16767 1.84085 1.51402 1.45850 1.09805 1.04748 1.77711 1.23632 0.95798 0.81028 0.96445 1.22051 0.99365 1.03529 0.96447 1.24562 0.98900 0.84682 0.96695 1.89700 1.55651 1.27997 1.55977 1.24400 0.94802 0.91479 0.93649 1.23718 0.96315 0.92656 1.00310 1.77144 0.98650 1.12268 1.23427 1.49385 1.02470 1.08341 1.48820 1.19861 0.96419 0.70878 0.99471 1.21243 1.47498 0.98187 0.90977 0.91665 1.24921 0.94403 0.95986 0.98319 1.69909 1.44460 1.07174 1.31136 0.86319 0.78111 0.78652 0.83427 1.20234 1.20759 1.19594 0.89819 0.90875 0.88794 0.76519 0.92159 0.91404 0.87926 0.89762 0.88450 0.88422 0.89723 0.80810 0.92512 0.92529 0.92082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.57 36.01 0.34 -1.28 16 2 C 0.17 3.29 7.01 -81.60 -0.57 2.72 16 3 C -0.34 -5.85 6.13 -105.07 -0.64 -6.49 16 4 C 0.61 9.36 7.58 -12.52 -0.09 9.26 16 5 O -0.55 -9.50 12.32 5.28 0.07 -9.44 16 6 N -0.73 -8.28 5.34 -54.82 -0.29 -8.58 16 7 C 0.12 1.24 1.35 -130.74 -0.18 1.06 16 8 C -0.16 -1.70 9.01 37.16 0.33 -1.36 16 9 C 0.03 0.32 8.57 37.61 0.32 0.65 16 10 O -0.38 -4.24 12.38 -35.23 -0.44 -4.68 16 11 C 0.03 0.29 8.50 37.61 0.32 0.61 16 12 C 0.06 0.95 11.50 -16.98 -0.20 0.76 16 13 N -0.30 -6.19 12.50 30.86 0.39 -5.80 16 14 N -0.31 -6.94 3.56 -57.78 -0.21 -7.14 16 15 C 0.25 6.16 5.97 -5.19 -0.03 6.13 16 16 C -0.54 -14.41 9.39 -34.44 -0.32 -14.74 16 17 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -24.37 13.29 55.43 0.74 -23.64 16 20 Si 0.91 20.63 29.54 -169.99 -5.02 15.60 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 25 H 0.07 1.25 7.05 -51.93 -0.37 0.89 16 26 H 0.09 1.55 6.50 -51.93 -0.34 1.21 16 27 H 0.40 3.56 7.59 -40.82 -0.31 3.25 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 30 H 0.10 1.38 5.44 -51.93 -0.28 1.10 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.17 2.02 7.50 -52.49 -0.39 1.63 16 36 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.06 1.38 7.02 -51.93 -0.36 1.01 16 38 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 322.43 15.07 4.86 4.86 Total: -1.00 -30.45 322.43 -5.69 -36.15 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -4.97 Total: 3.65 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.81 Total: -0.99 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.62 Total: -45.16 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.37 Total: -14.11 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.45 -5.69 -36.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899165756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds