Wall clock time and date at job start Tue Mar 31 2020 00:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38037 * 126.29162 * 2 1 4 4 C 1.47428 * 126.41654 * 0.02562 * 3 2 1 5 5 O 1.21599 * 120.00010 * 0.02851 * 4 3 2 6 6 N 1.34774 * 120.00037 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99990 * 180.02562 * 6 4 3 8 8 C 1.52999 * 113.00124 * 48.17636 * 7 6 4 9 9 C 1.54033 * 113.81784 * 276.19029 * 7 6 4 10 10 O 1.44184 * 85.51930 * 223.19687 * 9 7 6 11 11 C 1.44177 * 93.33846 * 24.18970 * 10 9 7 12 12 C 1.41295 * 107.17157 * 180.02562 * 3 2 1 13 13 N 1.30444 * 108.01985 * 0.02562 * 12 3 2 14 14 N 1.34257 * 126.28756 * 180.02562 * 2 1 3 15 15 C 1.46501 * 125.75897 * 359.94852 * 14 2 1 16 16 C 1.50702 * 109.46841 * 90.00449 * 15 14 2 17 17 H 1.08004 * 119.99932 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99959 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99998 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99949 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47388 * 89.99681 * 20 18 16 22 22 H 1.48501 * 109.47366 * 209.99944 * 20 18 16 23 23 H 1.48507 * 109.46968 * 329.99570 * 20 18 16 24 24 H 1.08998 * 109.47277 * 89.97031 * 1 2 3 25 25 H 1.09002 * 109.47256 * 209.97767 * 1 2 3 26 26 H 1.09001 * 109.46740 * 329.96807 * 1 2 3 27 27 H 0.96996 * 120.00519 * 0.02562 * 6 4 3 28 28 H 1.09000 * 109.47140 * 69.66747 * 8 7 6 29 29 H 1.09000 * 109.47282 * 189.67098 * 8 7 6 30 30 H 1.09007 * 109.47013 * 309.66574 * 8 7 6 31 31 H 1.09003 * 113.86525 * 337.34247 * 9 7 6 32 32 H 1.08994 * 113.87049 * 109.04689 * 9 7 6 33 33 H 1.08993 * 113.86319 * 221.66236 * 11 10 9 34 34 H 1.09001 * 113.97755 * 89.96905 * 11 10 9 35 35 H 1.08002 * 125.98990 * 179.73424 * 12 3 2 36 36 H 1.08993 * 109.47679 * 210.00172 * 15 14 2 37 37 H 1.08999 * 109.46901 * 330.00887 * 15 14 2 38 38 H 0.96996 * 119.99779 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5202 0.0005 5 8 0.6997 2.7877 0.0016 6 7 2.8000 3.5106 -0.0001 7 6 2.3645 4.9094 0.0010 8 6 1.2913 5.2006 1.0519 9 6 2.0330 5.4587 -1.3993 10 8 2.7502 6.6381 -0.9825 11 6 3.5251 5.9222 0.0002 12 6 3.6591 0.6498 -0.0006 13 7 3.6340 -0.6544 -0.0015 14 7 2.3016 -1.0822 -0.0005 15 6 1.8500 -2.4759 0.0000 16 6 1.6943 -2.9538 -1.4207 17 1 1.9105 -2.2863 -2.2418 18 6 1.2758 -4.2432 -1.6723 19 7 1.0130 -5.0562 -0.6725 20 14 1.0834 -4.8359 -3.4333 21 1 2.3641 -5.4251 -3.9000 22 1 0.0137 -5.8641 -3.4956 23 1 0.7194 -3.6896 -4.3044 24 1 -0.3634 0.0005 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3633 0.8897 0.5143 27 1 3.7462 3.2973 -0.0012 28 1 1.7317 5.1414 2.0471 29 1 0.8880 6.2005 0.8919 30 1 0.4894 4.4673 0.9651 31 1 2.5140 4.9143 -2.2119 32 1 0.9690 5.6259 -1.5670 33 1 3.6445 6.4568 0.9424 34 1 4.4623 5.5186 -0.3830 35 1 4.5450 1.2676 -0.0048 36 1 2.5849 -3.0958 0.5133 37 1 0.8917 -2.5471 0.5144 38 1 0.7189 -5.9634 -0.8495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899165756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:56:54 Heat of formation + Delta-G solvation = -2.085193 kcal Electronic energy + Delta-G solvation = -21664.809667 eV Core-core repulsion = 18316.249083 eV Total energy + Delta-G solvation = -3348.560584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.38105 -41.78174 -39.60517 -35.82905 -35.28545 -33.81068 -32.81562 -31.42325 -29.04994 -28.14618 -27.60174 -27.09623 -25.37980 -23.60488 -21.60594 -20.62558 -20.17927 -18.86789 -18.58399 -17.85325 -17.02265 -16.96073 -16.58891 -16.25302 -16.12897 -15.62812 -15.24316 -14.90052 -14.48771 -14.30448 -14.06345 -13.73512 -13.65738 -13.55159 -13.23507 -13.09790 -13.02341 -12.89292 -12.70493 -12.52014 -12.31116 -11.99020 -11.85241 -11.64561 -10.82565 -10.76643 -10.47735 -10.25512 -10.04832 -9.43242 -8.38271 -6.54682 0.69441 1.33910 1.37263 1.39375 1.48772 1.66018 2.28340 2.33592 2.52959 2.65147 2.94092 3.21587 3.75295 3.76602 3.87159 4.10967 4.16356 4.25229 4.36307 4.50803 4.60427 4.63577 4.73209 4.80510 4.84513 4.85399 4.90755 4.96742 5.09577 5.12249 5.19325 5.37871 5.48913 5.58508 5.70041 5.74653 6.05344 6.54559 6.65413 6.86688 7.16581 7.38722 8.69637 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.032109 B = 0.003673 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.820883 B = 7621.492161 C = 7686.894274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.145 3.855 3 C -0.331 4.331 4 C 0.609 3.391 5 O -0.570 6.570 6 N -0.707 5.707 7 C 0.111 3.889 8 C -0.154 4.154 9 C 0.026 3.974 10 O -0.393 6.393 11 C 0.044 3.956 12 C 0.079 3.921 13 N -0.338 5.338 14 N -0.339 5.339 15 C 0.267 3.733 16 C -0.556 4.556 17 H 0.052 0.948 18 C 0.024 3.976 19 N -0.917 5.917 20 Si 0.971 3.029 21 H -0.273 1.273 22 H -0.272 1.272 23 H -0.270 1.270 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.104 0.896 27 H 0.415 0.585 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.228 0.772 36 H 0.031 0.969 37 H 0.050 0.950 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.015 19.035 2.281 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.009 3.991 3 C -0.347 4.347 4 C 0.399 3.601 5 O -0.451 6.451 6 N -0.361 5.361 7 C 0.024 3.976 8 C -0.211 4.211 9 C -0.052 4.052 10 O -0.311 6.311 11 C -0.033 4.033 12 C -0.108 4.108 13 N -0.158 5.158 14 N -0.116 5.116 15 C 0.148 3.852 16 C -0.594 4.594 17 H 0.070 0.930 18 C -0.177 4.177 19 N -0.555 5.555 20 Si 0.795 3.205 21 H -0.198 1.198 22 H -0.196 1.196 23 H -0.194 1.194 24 H 0.100 0.900 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.253 0.747 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.244 0.756 36 H 0.049 0.951 37 H 0.068 0.932 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.807 18.085 2.266 18.620 hybrid contribution -0.159 -0.487 -0.718 0.882 sum 3.648 17.598 1.548 18.039 Atomic orbital electron populations 1.20548 0.85943 1.04038 1.03849 1.21983 0.95922 0.86794 0.94419 1.19990 0.93210 0.93141 1.28314 1.17108 0.85192 0.83614 0.74214 1.90617 1.17865 1.84249 1.52386 1.45662 1.10010 1.04469 1.75977 1.23804 0.97107 0.80486 0.96166 1.21980 0.98793 1.03084 0.97264 1.24575 0.98743 0.84823 0.97025 1.89695 1.56253 1.28433 1.56740 1.24611 0.94472 0.90093 0.94080 1.24536 0.97717 0.91574 0.96934 1.77096 0.98309 1.14577 1.25773 1.49099 1.03431 1.07738 1.51342 1.19351 0.95248 0.72454 0.98102 1.21398 1.47896 0.98502 0.91586 0.92991 1.25723 0.93815 0.95956 1.02239 1.69992 1.44857 1.07590 1.33039 0.85353 0.78338 0.78216 0.78604 1.19798 1.19636 1.19419 0.90021 0.91272 0.87786 0.74736 0.91069 0.90617 0.90655 0.89409 0.89116 0.86445 0.87343 0.75579 0.95118 0.93213 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.06 9.57 71.24 0.68 -2.38 16 2 C 0.14 5.75 7.01 42.14 0.30 6.04 16 3 C -0.33 -11.09 6.13 -20.15 -0.12 -11.21 16 4 C 0.61 17.61 7.58 86.66 0.66 18.26 16 5 O -0.57 -19.20 12.32 -4.03 -0.05 -19.25 16 6 N -0.71 -13.91 5.34 -456.64 -2.44 -16.35 16 7 C 0.11 2.02 1.35 4.30 0.01 2.02 16 8 C -0.15 -3.04 9.01 71.98 0.65 -2.39 16 9 C 0.03 0.52 8.57 72.27 0.62 1.14 16 10 O -0.39 -7.80 12.38 -148.98 -1.85 -9.65 16 11 C 0.04 0.57 8.50 72.28 0.61 1.19 16 12 C 0.08 2.46 11.50 85.65 0.99 3.45 16 13 N -0.34 -14.08 12.50 -56.27 -0.70 -14.79 16 14 N -0.34 -15.34 3.56 -336.71 -1.20 -16.54 16 15 C 0.27 13.67 5.97 85.63 0.51 14.18 16 16 C -0.56 -30.39 9.39 25.60 0.24 -30.15 16 17 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 18 C 0.02 1.29 5.46 84.66 0.46 1.76 16 19 N -0.92 -51.02 13.29 21.45 0.28 -50.74 16 20 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H 0.08 2.90 8.14 -2.39 -0.02 2.89 16 25 H 0.07 2.47 7.05 -2.39 -0.02 2.45 16 26 H 0.10 3.45 6.50 -2.39 -0.02 3.43 16 27 H 0.41 5.59 7.59 -92.71 -0.70 4.88 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.36 8.06 -2.39 -0.02 1.34 16 30 H 0.07 1.96 5.44 -2.38 -0.01 1.95 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.89 8.10 -2.39 -0.02 1.87 16 33 H 0.12 1.10 8.10 -2.39 -0.02 1.08 16 34 H 0.11 0.92 8.11 -2.39 -0.02 0.90 16 35 H 0.23 4.24 7.50 -2.91 -0.02 4.22 16 36 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 2.55 7.02 -2.39 -0.02 2.54 16 38 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -67.06 322.43 2.06 -65.01 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.39 Total: 16.02 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 5.60 Total: 1.91 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -4.06 Total: -98.40 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.89 Total: -28.90 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -67.06 2.06 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899165756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.921 kcal (2) G-P(sol) polarization free energy of solvation -67.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds