Wall clock time and date at job start Tue Mar 31 2020 01:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 110.65886 * 2 1 4 4 C 1.54602 * 110.74138 * 236.60323 * 2 1 3 5 5 N 1.47904 * 102.63153 * 216.05668 * 4 2 1 6 6 C 1.46898 * 110.99507 * 265.34751 * 5 4 2 7 7 C 1.53001 * 109.47056 * 282.65625 * 6 5 4 8 8 H 1.09001 * 109.47009 * 57.17532 * 7 6 5 9 9 O 1.42893 * 109.47684 * 297.17396 * 7 6 5 10 10 C 1.50707 * 109.47026 * 177.17184 * 7 6 5 11 11 H 1.08001 * 119.99693 * 359.97438 * 10 7 6 12 12 C 1.37872 * 119.99929 * 179.73247 * 10 7 6 13 13 N 1.31513 * 119.99957 * 0.26945 * 12 10 7 14 14 Si 1.86804 * 120.00126 * 180.27750 * 12 10 7 15 15 H 1.48497 * 109.47147 * 59.99144 * 14 12 10 16 16 H 1.48498 * 109.47114 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46615 * 299.99528 * 14 12 10 18 18 C 1.40035 * 107.90731 * 27.18146 * 5 4 2 19 19 C 1.39366 * 129.91801 * 161.92157 * 18 5 4 20 20 C 1.38124 * 120.17900 * 179.76466 * 19 18 5 21 21 F 1.35102 * 119.89412 * 179.97438 * 20 19 18 22 22 C 1.38538 * 120.21181 * 359.97004 * 20 19 18 23 23 C 1.38257 * 119.85378 * 0.11286 * 22 20 19 24 24 C 1.37937 * 120.11613 * 0.02562 * 23 22 20 25 25 H 1.08994 * 109.46569 * 298.24889 * 1 2 3 26 26 H 1.09001 * 109.46898 * 58.24901 * 1 2 3 27 27 H 1.09003 * 109.46999 * 178.25171 * 1 2 3 28 28 H 1.09007 * 109.46998 * 175.98428 * 3 2 1 29 29 H 1.08994 * 109.47629 * 295.98160 * 3 2 1 30 30 H 1.09002 * 109.47222 * 55.98746 * 3 2 1 31 31 H 1.09001 * 110.77971 * 97.76813 * 4 2 1 32 32 H 1.09004 * 110.77604 * 334.34017 * 4 2 1 33 33 H 1.09000 * 109.46861 * 162.66044 * 6 5 4 34 34 H 1.08995 * 109.47546 * 42.66542 * 6 5 4 35 35 H 0.96706 * 113.99676 * 300.00025 * 9 7 6 36 36 H 0.97009 * 119.99589 * 180.02562 * 13 12 10 37 37 H 1.08003 * 119.91220 * 359.70452 * 19 18 5 38 38 H 1.08000 * 120.07222 * 180.09067 * 22 20 19 39 39 H 1.08003 * 119.94405 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0699 1.4316 0.0000 4 6 2.0776 -0.7958 -1.2071 5 7 3.2833 -1.4441 -0.6471 6 6 4.4848 -0.6431 -0.9166 7 6 4.9152 -0.8429 -2.3712 8 1 4.0927 -0.5732 -3.0337 9 8 5.2661 -2.2121 -2.5804 10 6 6.1062 0.0318 -2.6673 11 1 6.5149 0.6670 -1.8953 12 6 6.6770 0.0174 -3.9222 13 7 6.1789 -0.7556 -4.8623 14 14 8.1581 1.0958 -4.2871 15 1 9.2748 0.7263 -3.3806 16 1 8.5794 0.8976 -5.6972 17 1 7.7976 2.5205 -4.0732 18 6 3.0856 -1.6046 0.7299 19 6 3.7411 -2.4356 1.6367 20 6 3.3812 -2.4288 2.9702 21 9 4.0202 -3.2371 3.8441 22 6 2.3673 -1.5959 3.4145 23 6 1.7125 -0.7707 2.5190 24 6 2.0669 -0.7765 1.1860 25 1 -0.3632 0.4864 0.9052 26 1 -0.3633 0.5408 -0.8739 27 1 -0.3633 -1.0272 -0.0314 28 1 3.1573 1.4099 0.0720 29 1 1.7768 1.9305 -0.9237 30 1 1.6602 1.9744 0.8519 31 1 2.3434 -0.1250 -2.0241 32 1 1.3554 -1.5424 -1.5377 33 1 5.2892 -0.9601 -0.2529 34 1 4.2654 0.4105 -0.7440 35 1 5.9930 -2.5215 -2.0227 36 1 6.5809 -0.7660 -5.7452 37 1 4.5319 -3.0873 1.2955 38 1 2.0888 -1.5914 4.4579 39 1 0.9216 -0.1210 2.8638 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930852472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:57 Heat of formation + Delta-G solvation = -60.307541 kcal Electronic energy + Delta-G solvation = -22261.977072 eV Core-core repulsion = 18890.971816 eV Total energy + Delta-G solvation = -3371.005256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -48.81101 -41.00096 -36.87220 -35.62387 -33.89057 -32.11603 -30.19458 -29.57175 -28.11811 -27.30364 -25.90995 -24.07922 -22.81854 -21.51784 -20.35354 -19.36528 -17.42734 -16.84444 -16.35165 -15.86622 -15.54015 -15.17990 -14.71868 -14.51454 -14.37018 -13.87169 -13.53145 -13.46761 -13.33395 -13.06174 -12.78926 -12.62067 -12.45322 -11.87371 -11.71693 -11.44334 -11.38591 -11.00281 -10.96146 -10.86528 -10.84758 -10.63660 -10.45422 -10.10784 -9.49580 -8.93937 -8.62183 -8.60195 -8.07865 -7.55953 -6.04206 -4.23654 1.22828 1.33136 3.26396 3.32235 3.33414 3.59392 3.84757 4.35436 4.45779 4.48025 4.79889 4.97675 5.02424 5.08890 5.17938 5.23325 5.42345 5.56558 5.61176 5.68760 5.77938 5.87997 5.91132 5.94913 6.00336 6.04534 6.10621 6.18287 6.27972 6.34227 6.36610 6.44574 6.57383 6.73124 6.83554 7.27387 7.52096 7.70115 7.81710 8.13200 8.79564 9.41241 9.57178 10.99747 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.019506 B = 0.005155 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.087437 B = 5430.349303 C = 6162.455294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 C -0.139 4.139 4 C 0.059 3.941 5 N -0.480 5.480 6 C 0.029 3.971 7 C 0.240 3.760 8 H 0.056 0.944 9 O -0.554 6.554 10 C -0.577 4.577 11 H 0.054 0.946 12 C 0.082 3.918 13 N -0.857 5.857 14 Si 0.889 3.111 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.141 3.859 19 C -0.157 4.157 20 C 0.114 3.886 21 F -0.142 7.142 22 C -0.181 4.181 23 C -0.058 4.058 24 C -0.146 4.146 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.049 0.951 35 H 0.342 0.658 36 H 0.262 0.738 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.276 1.529 12.938 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.068 4.068 5 N -0.194 5.194 6 C -0.095 4.095 7 C 0.182 3.818 8 H 0.073 0.927 9 O -0.356 6.356 10 C -0.616 4.616 11 H 0.073 0.927 12 C -0.125 4.125 13 N -0.492 5.492 14 Si 0.716 3.284 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.202 1.202 18 C 0.043 3.957 19 C -0.178 4.178 20 C 0.094 3.906 21 F -0.120 7.120 22 C -0.200 4.200 23 C -0.077 4.077 24 C -0.149 4.149 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.067 0.933 35 H 0.185 0.815 36 H 0.071 0.929 37 H 0.154 0.846 38 H 0.150 0.850 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.612 0.998 11.987 16.041 hybrid contribution 1.345 1.116 0.729 1.893 sum -9.268 2.114 12.715 15.876 Atomic orbital electron populations 1.21722 0.93161 1.02053 1.01839 1.20763 0.96331 0.95504 0.92713 1.21951 1.01708 0.93960 1.01983 1.23338 0.90916 0.96581 0.95941 1.60108 1.04898 1.47828 1.06601 1.23457 0.88783 0.94243 1.03009 1.19327 0.94866 0.80852 0.86774 0.92666 1.86578 1.54660 1.28574 1.65765 1.21570 1.15978 1.26639 0.97399 0.92748 1.25000 0.96775 0.94614 0.96063 1.70072 1.39738 1.36326 1.03052 0.86735 0.83203 0.81004 0.77425 1.20119 1.21131 1.20161 1.19512 0.93869 0.92571 0.89730 1.20358 1.04126 1.02529 0.90767 1.17279 0.94091 0.92384 0.86818 1.91482 1.80761 1.71321 1.68480 1.20880 0.98588 0.99940 1.00634 1.20108 0.98654 0.97708 0.91185 1.21046 1.00916 0.98489 0.94432 0.92622 0.92025 0.92327 0.91797 0.91700 0.92600 0.88886 0.89632 0.91680 0.93324 0.81456 0.92854 0.84553 0.85000 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 8.47 37.16 0.31 -1.05 16 2 C -0.05 -0.68 0.95 -154.38 -0.15 -0.83 16 3 C -0.14 -1.76 8.35 37.16 0.31 -1.45 16 4 C 0.06 0.94 5.84 -2.43 -0.01 0.93 16 5 N -0.48 -8.70 4.90 -169.03 -0.83 -9.53 16 6 C 0.03 0.59 4.32 -3.82 -0.02 0.57 16 7 C 0.24 5.90 2.90 -27.88 -0.08 5.82 16 8 H 0.06 1.48 7.05 -51.93 -0.37 1.12 16 9 O -0.55 -14.28 12.64 -35.23 -0.45 -14.73 16 10 C -0.58 -15.42 8.76 -34.44 -0.30 -15.72 16 11 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 12 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 13 N -0.86 -24.93 12.83 55.43 0.71 -24.22 16 14 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 C 0.14 2.32 5.48 -83.41 -0.46 1.86 16 19 C -0.16 -2.46 10.01 -39.20 -0.39 -2.85 16 20 C 0.11 1.62 7.28 -39.51 -0.29 1.33 16 21 F -0.14 -2.03 17.26 2.25 0.04 -1.99 16 22 C -0.18 -2.21 10.04 -39.46 -0.40 -2.61 16 23 C -0.06 -0.70 9.88 -39.68 -0.39 -1.09 16 24 C -0.15 -2.05 5.01 -104.02 -0.52 -2.57 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 28 H 0.06 0.93 5.74 -51.92 -0.30 0.63 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 1.56 6.56 -51.93 -0.34 1.22 16 32 H 0.09 1.30 7.89 -51.93 -0.41 0.89 16 33 H 0.06 1.31 7.92 -51.93 -0.41 0.90 16 34 H 0.05 0.95 5.25 -51.93 -0.27 0.67 16 35 H 0.34 7.95 9.04 45.56 0.41 8.36 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.14 2.12 8.06 -52.48 -0.42 1.70 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 39 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -29.73 321.53 -7.79 -37.51 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.61 Total: 7.84 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -2.48 Total: -15.51 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: -0.12 Total: -33.75 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: -0.45 Total: -14.73 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.73 -7.79 -37.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930852472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.795 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds