Wall clock time and date at job start Tue Mar 31 2020 01:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30018 * 127.33617 * 2 1 4 4 O 1.20657 * 112.29970 * 180.02562 * 3 2 1 5 5 C 1.33493 * 113.16058 * 359.75359 * 4 3 2 6 6 C 1.37364 * 106.33919 * 0.39149 * 5 4 3 7 7 C 1.47400 * 128.56224 * 179.90759 * 6 5 4 8 8 O 1.21605 * 119.99357 * 173.53700 * 7 6 5 9 9 N 1.34768 * 120.00083 * 353.53420 * 7 6 5 10 10 C 1.47025 * 125.64498 * 174.43439 * 9 7 6 11 11 C 1.54326 * 107.26825 * 178.97908 * 10 9 7 12 12 H 1.09000 * 110.72362 * 96.34911 * 11 10 9 13 13 C 1.53005 * 110.71969 * 219.44511 * 11 10 9 14 14 C 1.55156 * 103.10580 * 337.89517 * 11 10 9 15 15 H 1.08999 * 111.00471 * 277.34442 * 14 11 10 16 16 N 1.46499 * 111.00523 * 153.48818 * 14 11 10 17 17 C 1.36933 * 119.99973 * 155.00136 * 16 14 11 18 18 H 1.08000 * 120.00018 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00086 * 179.97438 * 17 16 14 20 20 N 1.31614 * 119.99717 * 0.02562 * 19 17 16 21 21 Si 1.86808 * 120.00012 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46872 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46721 * 120.00600 * 21 19 17 24 24 H 1.48495 * 109.47011 * 240.00674 * 21 19 17 25 25 C 1.47423 * 125.65283 * 354.47870 * 9 7 6 26 26 H 1.09003 * 109.46715 * 269.99814 * 1 2 3 27 27 H 1.08997 * 109.46929 * 29.99210 * 1 2 3 28 28 H 1.08997 * 109.47298 * 149.99845 * 1 2 3 29 29 H 1.07995 * 126.83324 * 180.30187 * 5 4 3 30 30 H 1.08998 * 109.88274 * 59.56804 * 10 9 7 31 31 H 1.09001 * 110.01295 * 298.46797 * 10 9 7 32 32 H 1.08996 * 109.47383 * 56.15516 * 13 11 10 33 33 H 1.09010 * 109.46762 * 296.15653 * 13 11 10 34 34 H 1.09003 * 109.47347 * 176.16103 * 13 11 10 35 35 H 0.96999 * 120.00019 * 334.99659 * 16 14 11 36 36 H 0.97007 * 119.99890 * 179.97438 * 20 19 17 37 37 H 1.08996 * 110.36489 * 322.93274 * 25 9 7 38 38 H 1.09001 * 110.36539 * 85.13857 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6495 -0.6008 0.0044 6 6 2.3992 -1.1697 -0.0006 7 6 2.0401 -2.5993 -0.0002 8 8 0.8765 -2.9338 0.1135 9 7 3.0013 -3.5355 -0.1258 10 6 2.8004 -4.9885 -0.0261 11 6 4.1709 -5.6577 -0.2616 12 1 4.6574 -5.8847 0.6871 13 6 4.0168 -6.9247 -1.1054 14 6 4.9629 -4.5735 -1.0390 15 1 4.7236 -4.6018 -2.1020 16 7 6.4045 -4.7204 -0.8234 17 6 7.2881 -4.2482 -1.7568 18 1 6.9222 -3.7670 -2.6518 19 6 8.6540 -4.3869 -1.5522 20 7 9.0998 -4.9728 -0.4613 21 14 9.8594 -3.7433 -2.8260 22 1 9.1095 -3.1322 -3.9527 23 1 10.7378 -2.7203 -2.2038 24 1 10.6889 -4.8654 -3.3339 25 6 4.4285 -3.2723 -0.3851 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8900 -0.5137 28 1 -0.3634 -0.8899 -0.5138 29 1 4.5966 -1.1195 0.0095 30 1 2.0917 -5.3177 -0.7860 31 1 2.4274 -5.2464 0.9651 32 1 3.5179 -6.6786 -2.0427 33 1 3.4215 -7.6557 -0.5579 34 1 5.0012 -7.3427 -1.3164 35 1 6.7331 -5.1521 -0.0193 36 1 10.0544 -5.0701 -0.3184 37 1 4.5411 -2.4298 -1.0674 38 1 4.9538 -3.0754 0.5495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000939049160.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:47 Heat of formation + Delta-G solvation = 23.665473 kcal Electronic energy + Delta-G solvation = -21946.895556 eV Core-core repulsion = 18599.451604 eV Total energy + Delta-G solvation = -3347.443952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.99431 -41.14898 -38.94239 -35.89622 -35.54668 -34.33706 -32.99321 -32.31414 -29.79597 -29.23645 -27.75828 -26.06076 -25.10870 -23.11863 -22.17528 -21.38265 -20.97302 -19.12333 -18.81712 -18.48147 -17.82682 -17.33033 -16.98050 -16.31335 -15.60448 -15.44615 -15.18067 -14.53968 -14.44121 -14.38153 -14.25384 -14.09577 -13.96503 -13.49014 -13.21940 -13.03129 -12.86638 -12.85670 -12.41763 -12.17049 -12.09720 -11.97750 -11.69266 -11.44399 -11.25422 -11.02125 -10.93711 -10.82456 -9.75691 -9.02088 -7.92230 -5.21419 -0.02399 0.67009 1.51884 1.54672 1.61419 1.62925 2.02733 2.17395 2.59088 2.93795 3.23708 3.38348 3.41929 3.78580 3.79597 3.84777 3.91869 4.19229 4.33557 4.34161 4.48281 4.53644 4.55020 4.60783 4.70028 4.74810 4.83264 4.89480 5.09445 5.10928 5.14167 5.19289 5.36211 5.48169 5.59584 6.28553 6.34670 6.93730 7.10688 7.37872 8.08076 8.32372 9.30404 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017092 B = 0.005128 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.784751 B = 5459.191811 C = 6818.536259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.062 3.938 3 N -0.378 5.378 4 O 0.091 5.909 5 C 0.016 3.984 6 C -0.275 4.275 7 C 0.608 3.392 8 O -0.565 6.565 9 N -0.604 5.604 10 C 0.121 3.879 11 C -0.105 4.105 12 H 0.083 0.917 13 C -0.130 4.130 14 C 0.173 3.827 15 H 0.067 0.933 16 N -0.716 5.716 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.063 4.063 20 N -0.964 5.964 21 Si 0.962 3.038 22 H -0.266 1.266 23 H -0.296 1.296 24 H -0.299 1.299 25 C 0.066 3.934 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.252 0.748 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.378 0.622 36 H 0.250 0.750 37 H 0.083 0.917 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.411 4.260 0.964 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 N -0.088 5.088 4 O 0.035 5.965 5 C -0.066 4.066 6 C -0.282 4.282 7 C 0.397 3.603 8 O -0.446 6.446 9 N -0.336 5.336 10 C -0.001 4.001 11 C -0.124 4.124 12 H 0.101 0.899 13 C -0.187 4.187 14 C 0.062 3.938 15 H 0.085 0.915 16 N -0.355 5.355 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.256 4.256 20 N -0.614 5.614 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.227 1.227 25 C -0.060 4.060 26 H 0.112 0.888 27 H 0.111 0.889 28 H 0.105 0.895 29 H 0.268 0.732 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.211 0.789 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.151 5.519 0.853 15.213 hybrid contribution 1.253 -0.750 -0.179 1.472 sum -12.898 4.768 0.674 13.768 Atomic orbital electron populations 1.20306 0.83460 1.04584 1.04617 1.25261 0.99974 0.86102 0.98704 1.73661 0.89666 1.24078 1.21368 1.84569 1.21235 1.23683 1.67042 1.27518 1.01242 0.83181 0.94618 1.22256 0.93665 0.95022 1.17264 1.16561 0.84026 0.83183 0.76490 1.90739 1.18899 1.82271 1.52728 1.48240 1.08760 1.07133 1.69456 1.22054 0.97576 0.78085 1.02365 1.22449 0.93845 0.95955 1.00200 0.89898 1.21623 1.01787 0.95935 0.99384 1.21512 0.83524 0.91379 0.97400 0.91519 1.42376 0.99716 1.69683 1.23730 1.19619 0.87568 1.29847 1.00075 0.90208 1.25396 0.98637 1.02273 0.99281 1.69790 1.13154 1.50123 1.28294 0.85249 0.79410 0.77055 0.79070 1.19032 1.22339 1.22698 1.23658 0.79030 1.02168 1.01100 0.88784 0.88851 0.89529 0.73199 0.90642 0.90735 0.92214 0.90850 0.93305 0.78890 0.94061 0.89853 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.52 10.11 71.24 0.72 -0.80 16 2 C 0.06 1.65 7.58 45.16 0.34 2.00 16 3 N -0.38 -10.35 12.01 -44.78 -0.54 -10.89 16 4 O 0.09 2.32 11.06 76.98 0.85 3.18 16 5 C 0.02 0.38 10.66 67.61 0.72 1.10 16 6 C -0.27 -7.49 6.37 -18.74 -0.12 -7.61 16 7 C 0.61 18.27 7.83 86.66 0.68 18.95 16 8 O -0.57 -19.44 16.12 -4.05 -0.07 -19.50 16 9 N -0.60 -16.70 3.33 -815.28 -2.71 -19.41 16 10 C 0.12 3.08 6.47 86.73 0.56 3.64 16 11 C -0.10 -2.81 3.19 -9.60 -0.03 -2.84 16 12 H 0.08 2.31 8.00 -2.39 -0.02 2.29 16 13 C -0.13 -3.18 9.14 71.98 0.66 -2.53 16 14 C 0.17 5.59 3.17 46.46 0.15 5.74 16 15 H 0.07 2.24 8.00 -2.39 -0.02 2.22 16 16 N -0.72 -30.33 5.25 -316.03 -1.66 -31.99 16 17 C -0.24 -11.55 9.96 84.03 0.84 -10.72 16 18 H 0.08 3.69 7.83 -2.91 -0.02 3.67 16 19 C -0.06 -3.25 5.50 84.86 0.47 -2.78 16 20 N -0.96 -53.93 13.06 21.65 0.28 -53.65 16 21 Si 0.96 42.47 29.55 68.60 2.03 44.50 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 23 H -0.30 -13.24 7.11 99.48 0.71 -12.53 16 24 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 25 C 0.07 1.84 4.90 86.93 0.43 2.26 16 26 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 1.96 7.24 -2.39 -0.02 1.94 16 29 H 0.25 4.88 5.18 -2.91 -0.02 4.87 16 30 H 0.08 1.86 7.80 -2.39 -0.02 1.84 16 31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 33 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.38 17.51 7.76 -92.71 -0.72 16.79 16 36 H 0.25 13.79 8.31 -92.70 -0.77 13.02 16 37 H 0.08 2.17 5.98 -2.39 -0.01 2.16 16 38 H 0.08 2.17 7.85 -2.39 -0.02 2.15 16 Total: -1.00 -60.75 319.36 3.96 -56.78 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 0.37 Total: 24.57 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: 5.41 Total: 6.42 kcal Atomic # 7 Polarization: -111.32 SS G_CDS: -4.63 Total: -115.94 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.79 Total: -16.33 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -60.75 3.96 -56.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000939049160.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.449 kcal (2) G-P(sol) polarization free energy of solvation -60.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds