Wall clock time and date at job start Tue Mar 31 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41263 * 126.70779 * 2 1 4 4 C 1.36829 * 103.84732 * 180.02562 * 3 2 1 5 5 C 1.47507 * 126.94303 * 179.97438 * 4 3 2 6 6 O 1.21579 * 120.00146 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00000 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99863 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47696 * 325.00099 * 8 7 5 10 10 C 1.53001 * 109.47105 * 85.00356 * 8 7 5 11 11 C 1.53000 * 109.46935 * 204.99806 * 8 7 5 12 12 C 1.53498 * 114.20476 * 180.02562 * 11 8 7 13 13 N 1.47072 * 87.98531 * 87.52370 * 12 11 8 14 14 C 1.36937 * 136.05474 * 207.08946 * 13 12 11 15 15 H 1.07997 * 120.00175 * 6.65345 * 14 13 12 16 16 C 1.38812 * 119.99799 * 186.65772 * 14 13 12 17 17 N 1.31617 * 119.99791 * 6.44001 * 16 14 13 18 18 Si 1.86796 * 120.00183 * 186.44246 * 16 14 13 19 19 H 1.48498 * 109.47075 * 265.01704 * 18 16 14 20 20 H 1.48500 * 109.46850 * 25.01427 * 18 16 14 21 21 H 1.48496 * 109.47374 * 145.01871 * 18 16 14 22 22 C 1.47066 * 87.88224 * 27.34172 * 13 12 11 23 23 O 1.34642 * 106.11217 * 0.26552 * 4 3 2 24 24 N 1.20893 * 111.46362 * 359.52448 * 23 4 3 25 25 H 1.08998 * 109.46707 * 89.99517 * 1 2 3 26 26 H 1.08994 * 109.46722 * 209.99962 * 1 2 3 27 27 H 1.09001 * 109.46743 * 329.99755 * 1 2 3 28 28 H 1.08001 * 128.07694 * 0.02562 * 3 2 1 29 29 H 0.97005 * 119.99757 * 0.02562 * 7 5 4 30 30 H 1.08999 * 109.46965 * 299.99998 * 10 8 7 31 31 H 1.09004 * 109.47240 * 59.99280 * 10 8 7 32 32 H 1.08995 * 109.47689 * 179.97438 * 10 8 7 33 33 H 1.08994 * 113.41432 * 46.80672 * 11 8 7 34 34 H 1.09000 * 113.47213 * 332.73897 * 12 11 8 35 35 H 1.09002 * 113.52190 * 202.30784 * 12 11 8 36 36 H 0.97000 * 119.99892 * 179.97438 * 17 16 14 37 37 H 1.09000 * 113.46757 * 87.44265 * 22 13 12 38 38 H 1.08999 * 113.46471 * 217.87772 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6122 0.6009 -0.0006 5 6 4.8871 1.3428 -0.0014 6 8 4.8830 2.5586 -0.0011 7 7 6.0567 0.6729 -0.0024 8 6 7.3228 1.4098 -0.0038 9 1 7.2129 2.3200 -0.5932 10 6 7.7018 1.7751 1.4328 11 6 8.4206 0.5362 -0.6143 12 6 9.8006 1.2062 -0.6687 13 7 10.0428 0.6992 0.6904 14 6 10.8018 1.0809 1.7644 15 1 11.3324 2.0212 1.7437 16 6 10.8892 0.2590 2.8796 17 7 10.3485 -0.9408 2.8568 18 14 11.7741 0.8557 4.4126 19 1 13.1802 0.3785 4.3899 20 1 11.7557 2.3401 4.4485 21 1 11.0901 0.3228 5.6181 22 6 9.1161 -0.4015 0.3862 23 8 3.4540 -0.7361 -0.0069 24 7 2.2848 -1.0433 -0.0006 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.0680 2.1746 0.0004 29 1 6.0600 -0.2971 -0.0030 30 1 6.9198 2.3974 1.8678 31 1 7.8117 0.8648 2.0223 32 1 8.6441 2.3230 1.4320 33 1 8.1218 0.0518 -1.5438 34 1 9.7533 2.2937 -0.7244 35 1 10.4645 0.7745 -1.4177 36 1 10.4099 -1.5153 3.6360 37 1 9.5988 -1.2577 -0.0848 38 1 8.4855 -0.6836 1.2294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969269719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:37 Heat of formation + Delta-G solvation = 89.302069 kcal Electronic energy + Delta-G solvation = -21762.974078 eV Core-core repulsion = 18418.376343 eV Total energy + Delta-G solvation = -3344.597735 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.12657 -39.90492 -38.47915 -35.19712 -34.50885 -32.41681 -32.05285 -29.67122 -28.91523 -27.73238 -24.82468 -24.68485 -23.64987 -22.95829 -21.34089 -20.03068 -18.98605 -17.90689 -17.89664 -16.79734 -16.18395 -15.88953 -15.03832 -14.85621 -14.69810 -14.06293 -13.82948 -13.80611 -13.65896 -13.36701 -13.00747 -12.63088 -12.44769 -11.87806 -11.57240 -11.27148 -11.14628 -11.01396 -10.78745 -10.62590 -10.42445 -10.29666 -10.23499 -9.88280 -9.84783 -9.74320 -9.22641 -8.83605 -8.73952 -6.84785 -5.80430 -3.10687 0.72276 1.86826 2.56373 3.03105 3.27102 3.38077 3.44360 3.45709 3.86710 4.32858 4.45074 4.80900 4.89509 5.12709 5.15983 5.23095 5.26410 5.33951 5.36601 5.46961 5.52199 5.79911 5.87722 5.97835 6.26280 6.28832 6.45389 6.58295 6.64985 6.66760 6.92873 7.14327 7.22491 7.41511 7.49049 7.54445 7.93289 7.94976 8.11586 9.01735 9.68540 10.62757 11.37886 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.003870 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.339151 B = 7234.019201 C = 7508.865900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.007 3.993 3 C -0.159 4.159 4 C -0.072 4.072 5 C 0.601 3.399 6 O -0.518 6.518 7 N -0.699 5.699 8 C 0.174 3.826 9 H 0.082 0.918 10 C -0.148 4.148 11 C -0.164 4.164 12 C 0.127 3.873 13 N -0.603 5.603 14 C -0.216 4.216 15 H 0.080 0.920 16 C -0.004 4.004 17 N -0.917 5.917 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.279 1.279 21 H -0.290 1.290 22 C 0.164 3.836 23 O 0.118 5.882 24 N -0.348 5.348 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.182 0.818 29 H 0.406 0.594 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.042 0.958 35 H 0.035 0.965 36 H 0.253 0.747 37 H 0.029 0.971 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.207 1.972 -7.499 17.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C -0.182 4.182 4 C -0.139 4.139 5 C 0.383 3.617 6 O -0.394 6.394 7 N -0.348 5.348 8 C 0.071 3.929 9 H 0.100 0.900 10 C -0.206 4.206 11 C -0.184 4.184 12 C 0.000 4.000 13 N -0.330 5.330 14 C -0.343 4.343 15 H 0.098 0.902 16 C -0.201 4.201 17 N -0.564 5.564 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.205 1.205 21 H -0.217 1.217 22 C 0.039 3.961 23 O 0.045 5.955 24 N -0.050 5.050 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.102 0.898 28 H 0.200 0.800 29 H 0.241 0.759 30 H 0.050 0.950 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.046 0.954 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.253 1.523 -7.144 17.819 hybrid contribution 0.580 0.357 0.814 1.061 sum -15.674 1.880 -6.330 17.008 Atomic orbital electron populations 1.20190 0.85376 1.04070 1.03583 1.23651 0.99340 0.88429 1.03644 1.22840 0.90000 1.01656 1.03656 1.24461 0.97672 0.83854 1.07883 1.16519 0.81088 0.86230 0.77827 1.90859 1.85999 1.11809 1.50752 1.46144 1.05570 1.11060 1.72064 1.20726 0.79617 0.93793 0.98724 0.89970 1.22184 1.01386 1.02929 0.94094 1.23383 0.94936 1.00448 0.99601 1.22344 0.91253 0.97309 0.89116 1.45784 1.51774 1.27671 1.07730 1.18872 1.22815 1.01674 0.90967 0.90192 1.24767 1.00934 0.95758 0.98636 1.69832 1.49245 1.07857 1.29453 0.86182 0.79052 0.78041 0.83009 1.21744 1.20491 1.21663 1.22095 0.89981 0.90290 0.93774 1.84995 1.21349 1.22263 1.66856 1.73741 0.89323 1.24371 1.17550 0.89963 0.90319 0.89752 0.80043 0.75877 0.95047 0.90921 0.89082 0.90865 0.93952 0.94714 0.93689 0.95363 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.47 36.01 0.38 -0.13 16 2 C 0.01 0.08 7.31 -82.16 -0.60 -0.52 16 3 C -0.16 -1.80 10.91 -38.94 -0.43 -2.22 16 4 C -0.07 -0.95 7.29 -36.32 -0.26 -1.22 16 5 C 0.60 9.01 7.78 -12.48 -0.10 8.92 16 6 O -0.52 -9.13 16.58 5.30 0.09 -9.04 16 7 N -0.70 -10.23 5.07 -54.86 -0.28 -10.51 16 8 C 0.17 2.90 2.76 -67.93 -0.19 2.72 16 9 H 0.08 1.38 7.58 -51.93 -0.39 0.99 16 10 C -0.15 -2.90 8.06 37.16 0.30 -2.60 16 11 C -0.16 -2.78 4.25 -89.97 -0.38 -3.16 16 12 C 0.13 2.42 7.86 -8.51 -0.07 2.35 16 13 N -0.60 -14.27 2.16 -184.59 -0.40 -14.67 16 14 C -0.22 -5.71 9.57 -15.06 -0.14 -5.85 16 15 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 16 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 17 N -0.92 -26.14 11.81 55.49 0.66 -25.49 16 18 Si 0.91 21.65 29.56 -169.99 -5.02 16.62 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 C 0.16 3.54 6.22 -8.38 -0.05 3.49 16 23 O 0.12 1.55 11.04 15.55 0.17 1.73 16 24 N -0.35 -4.54 12.04 33.52 0.40 -4.13 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.41 5.30 8.43 -40.82 -0.34 4.96 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.61 6.32 -51.93 -0.33 1.29 16 32 H 0.09 1.96 5.93 -51.93 -0.31 1.66 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.54 6.17 -51.93 -0.32 1.21 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -30.67 321.31 -6.22 -36.90 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.04 Total: 2.20 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.64 Total: 1.56 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: 0.38 Total: -54.80 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.26 Total: -7.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.67 -6.22 -36.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969269719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.199 kcal (2) G-P(sol) polarization free energy of solvation -30.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds