Wall clock time and date at job start Tue Mar 31 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41263 * 126.70779 * 2 1 4 4 C 1.36829 * 103.84732 * 180.02562 * 3 2 1 5 5 C 1.47507 * 126.94303 * 179.97438 * 4 3 2 6 6 O 1.21579 * 120.00146 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00000 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99863 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47696 * 325.00099 * 8 7 5 10 10 C 1.53001 * 109.47105 * 85.00356 * 8 7 5 11 11 C 1.53000 * 109.46935 * 204.99806 * 8 7 5 12 12 C 1.53498 * 114.20476 * 180.02562 * 11 8 7 13 13 N 1.47072 * 87.98531 * 87.52370 * 12 11 8 14 14 C 1.36937 * 136.05474 * 207.08946 * 13 12 11 15 15 H 1.07997 * 120.00175 * 6.65345 * 14 13 12 16 16 C 1.38812 * 119.99799 * 186.65772 * 14 13 12 17 17 N 1.31617 * 119.99791 * 6.44001 * 16 14 13 18 18 Si 1.86796 * 120.00183 * 186.44246 * 16 14 13 19 19 H 1.48498 * 109.47075 * 265.01704 * 18 16 14 20 20 H 1.48500 * 109.46850 * 25.01427 * 18 16 14 21 21 H 1.48496 * 109.47374 * 145.01871 * 18 16 14 22 22 C 1.47066 * 87.88224 * 27.34172 * 13 12 11 23 23 O 1.34642 * 106.11217 * 0.26552 * 4 3 2 24 24 N 1.20893 * 111.46362 * 359.52448 * 23 4 3 25 25 H 1.08998 * 109.46707 * 89.99517 * 1 2 3 26 26 H 1.08994 * 109.46722 * 209.99962 * 1 2 3 27 27 H 1.09001 * 109.46743 * 329.99755 * 1 2 3 28 28 H 1.08001 * 128.07694 * 0.02562 * 3 2 1 29 29 H 0.97005 * 119.99757 * 0.02562 * 7 5 4 30 30 H 1.08999 * 109.46965 * 299.99998 * 10 8 7 31 31 H 1.09004 * 109.47240 * 59.99280 * 10 8 7 32 32 H 1.08995 * 109.47689 * 179.97438 * 10 8 7 33 33 H 1.08994 * 113.41432 * 46.80672 * 11 8 7 34 34 H 1.09000 * 113.47213 * 332.73897 * 12 11 8 35 35 H 1.09002 * 113.52190 * 202.30784 * 12 11 8 36 36 H 0.97000 * 119.99892 * 179.97438 * 17 16 14 37 37 H 1.09000 * 113.46757 * 87.44265 * 22 13 12 38 38 H 1.08999 * 113.46471 * 217.87772 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3514 1.1325 0.0000 4 6 3.6122 0.6009 -0.0006 5 6 4.8871 1.3428 -0.0014 6 8 4.8830 2.5586 -0.0011 7 7 6.0567 0.6729 -0.0024 8 6 7.3228 1.4098 -0.0038 9 1 7.2129 2.3200 -0.5932 10 6 7.7018 1.7751 1.4328 11 6 8.4206 0.5362 -0.6143 12 6 9.8006 1.2062 -0.6687 13 7 10.0428 0.6992 0.6904 14 6 10.8018 1.0809 1.7644 15 1 11.3324 2.0212 1.7437 16 6 10.8892 0.2590 2.8796 17 7 10.3485 -0.9408 2.8568 18 14 11.7741 0.8557 4.4126 19 1 13.1802 0.3785 4.3899 20 1 11.7557 2.3401 4.4485 21 1 11.0901 0.3228 5.6181 22 6 9.1161 -0.4015 0.3862 23 8 3.4540 -0.7361 -0.0069 24 7 2.2848 -1.0433 -0.0006 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 2.0680 2.1746 0.0004 29 1 6.0600 -0.2971 -0.0030 30 1 6.9198 2.3974 1.8678 31 1 7.8117 0.8648 2.0223 32 1 8.6441 2.3230 1.4320 33 1 8.1218 0.0518 -1.5438 34 1 9.7533 2.2937 -0.7244 35 1 10.4645 0.7745 -1.4177 36 1 10.4099 -1.5153 3.6360 37 1 9.5988 -1.2577 -0.0848 38 1 8.4855 -0.6836 1.2294 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969269719.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:37 Heat of formation + Delta-G solvation = 69.646265 kcal Electronic energy + Delta-G solvation = -21763.826417 eV Core-core repulsion = 18418.376343 eV Total energy + Delta-G solvation = -3345.450075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.04751 -41.28128 -39.96762 -36.23566 -35.70956 -34.18391 -33.26166 -31.10557 -29.60352 -29.56289 -26.43501 -26.20314 -25.07510 -23.93883 -22.88373 -21.17135 -20.30246 -19.16938 -18.85183 -18.58849 -17.26756 -17.20864 -16.85554 -16.33835 -16.04223 -15.64949 -15.23861 -14.84211 -14.47112 -14.20322 -14.14776 -13.94599 -13.65830 -13.53700 -13.04634 -12.91828 -12.77070 -12.56215 -12.40638 -12.35762 -12.09174 -11.66306 -11.51251 -11.49594 -11.11357 -10.88302 -10.84735 -10.72545 -10.16783 -8.77313 -7.86350 -5.14821 -0.29131 1.01329 1.46841 1.48129 1.50736 1.56229 1.88774 2.15601 2.51129 3.09641 3.37749 3.41226 3.58783 3.71918 3.83317 3.94468 4.00018 4.35613 4.37721 4.54078 4.71014 4.73015 4.76344 4.81653 4.84058 4.92380 5.04778 5.07710 5.10818 5.20564 5.29453 5.44039 5.56966 5.63409 5.76332 5.98783 6.29929 6.88633 6.98227 7.03425 7.67606 8.69062 9.32182 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.003870 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.339151 B = 7234.019201 C = 7508.865900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.014 3.986 3 C -0.148 4.148 4 C -0.090 4.090 5 C 0.607 3.393 6 O -0.545 6.545 7 N -0.694 5.694 8 C 0.184 3.816 9 H 0.093 0.907 10 C -0.133 4.133 11 C -0.130 4.130 12 C 0.125 3.875 13 N -0.630 5.630 14 C -0.213 4.213 15 H 0.082 0.918 16 C -0.060 4.060 17 N -0.948 5.948 18 Si 0.963 3.037 19 H -0.291 1.291 20 H -0.269 1.269 21 H -0.299 1.299 22 C 0.162 3.838 23 O 0.105 5.895 24 N -0.370 5.370 25 H 0.099 0.901 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.203 0.797 29 H 0.415 0.585 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.245 0.755 37 H 0.017 0.983 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.849 2.939 -8.787 20.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.143 4.143 3 C -0.170 4.170 4 C -0.156 4.156 5 C 0.391 3.609 6 O -0.423 6.423 7 N -0.344 5.344 8 C 0.080 3.920 9 H 0.110 0.890 10 C -0.191 4.191 11 C -0.149 4.149 12 C -0.001 4.001 13 N -0.356 5.356 14 C -0.341 4.341 15 H 0.099 0.901 16 C -0.253 4.253 17 N -0.597 5.597 18 Si 0.793 3.207 19 H -0.219 1.219 20 H -0.194 1.194 21 H -0.226 1.226 22 C 0.036 3.964 23 O 0.035 5.965 24 N -0.075 5.075 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.125 0.875 28 H 0.220 0.780 29 H 0.251 0.749 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.035 0.965 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.883 2.499 -8.466 19.943 hybrid contribution 1.006 0.090 1.165 1.541 sum -16.877 2.590 -7.302 18.570 Atomic orbital electron populations 1.20418 0.82459 1.05362 1.05069 1.24297 1.01028 0.87472 1.01546 1.23216 0.89258 1.02785 1.01735 1.24189 0.97374 0.84225 1.09776 1.16617 0.81511 0.85927 0.76818 1.90841 1.86531 1.12951 1.52010 1.45987 1.04979 1.11409 1.72037 1.20495 0.80407 0.94361 0.96716 0.88953 1.21963 1.00352 1.00965 0.95823 1.23140 0.93988 0.98354 0.99459 1.22531 0.92347 0.98255 0.86923 1.46055 1.51656 1.28676 1.09210 1.19162 1.21616 1.01381 0.91946 0.90075 1.25423 1.02565 0.96162 1.01199 1.69986 1.51254 1.08903 1.29590 0.85280 0.77672 0.78000 0.79769 1.21863 1.19367 1.22554 1.22060 0.89843 0.90429 0.94040 1.84981 1.21709 1.22143 1.67676 1.73743 0.89507 1.25456 1.18792 0.88243 0.89990 0.87520 0.78030 0.74910 0.95048 0.94063 0.91139 0.87093 0.92700 0.93258 0.94605 0.96536 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.47 71.24 0.75 -0.04 16 2 C 0.01 0.28 7.31 43.56 0.32 0.60 16 3 C -0.15 -3.02 10.91 22.68 0.25 -2.77 16 4 C -0.09 -2.24 7.29 24.39 0.18 -2.06 16 5 C 0.61 17.51 7.78 86.69 0.67 18.18 16 6 O -0.54 -18.49 16.58 -3.96 -0.07 -18.56 16 7 N -0.69 -19.57 5.07 -445.75 -2.26 -21.83 16 8 C 0.18 5.89 2.76 44.99 0.12 6.01 16 9 H 0.09 2.89 7.58 -2.39 -0.02 2.87 16 10 C -0.13 -5.24 8.06 71.98 0.58 -4.66 16 11 C -0.13 -4.17 4.25 -10.37 -0.04 -4.21 16 12 C 0.13 4.55 7.86 83.18 0.65 5.20 16 13 N -0.63 -29.77 2.16 -737.93 -1.60 -31.37 16 14 C -0.21 -11.33 9.57 84.03 0.80 -10.52 16 15 H 0.08 4.19 7.84 -2.91 -0.02 4.17 16 16 C -0.06 -3.32 5.50 84.86 0.47 -2.86 16 17 N -0.95 -55.68 11.81 21.65 0.26 -55.42 16 18 Si 0.96 45.31 29.56 68.60 2.03 47.34 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 22 C 0.16 7.00 6.22 83.26 0.52 7.52 16 23 O 0.10 2.68 11.04 65.82 0.73 3.40 16 24 N -0.37 -9.18 12.04 -48.85 -0.59 -9.77 16 25 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.20 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.41 10.47 8.43 -92.70 -0.78 9.69 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 1.88 6.32 -2.38 -0.02 1.86 16 32 H 0.07 3.05 5.93 -2.39 -0.01 3.04 16 33 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.05 1.87 8.12 -2.39 -0.02 1.85 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.04 1.90 6.17 -2.39 -0.01 1.88 16 Total: -1.00 -67.17 321.31 4.07 -63.10 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.30 Total: 12.72 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: 5.27 Total: 10.38 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -4.19 Total: -118.39 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.66 Total: -15.15 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -67.17 4.07 -63.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969269719.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.747 kcal (2) G-P(sol) polarization free energy of solvation -67.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds