Wall clock time and date at job start Tue Mar 31 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35314 * 128.04001 * 2 1 4 4 O 1.34020 * 106.66946 * 180.22339 * 3 2 1 5 5 N 1.20907 * 111.84616 * 359.76507 * 4 3 2 6 6 C 1.30987 * 111.43974 * 359.97438 * 5 4 3 7 7 C 1.48331 * 126.93803 * 179.97438 * 6 5 4 8 8 O 1.21496 * 119.99477 * 180.02562 * 7 6 5 9 9 N 1.34768 * 120.00090 * 0.02616 * 7 6 5 10 10 C 1.46500 * 120.00056 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.46845 * 35.00845 * 10 9 7 12 12 C 1.52997 * 109.47473 * 275.00296 * 10 9 7 13 13 C 1.53006 * 109.47249 * 154.99998 * 10 9 7 14 14 C 1.53951 * 113.74032 * 278.74614 * 13 10 9 15 15 N 1.47814 * 86.03241 * 222.08256 * 14 13 10 16 16 C 1.36936 * 134.45554 * 204.64600 * 15 14 13 17 17 H 1.08000 * 119.99930 * 179.86546 * 16 15 14 18 18 C 1.38813 * 120.00235 * 359.86773 * 16 15 14 19 19 N 1.31620 * 119.99768 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00507 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47080 * 59.99526 * 20 18 16 22 22 H 1.48494 * 109.47519 * 179.97438 * 20 18 16 23 23 H 1.48507 * 109.46842 * 299.99849 * 20 18 16 24 24 C 1.47582 * 91.05472 * 24.54901 * 15 14 13 25 25 H 1.08996 * 109.46780 * 270.15322 * 1 2 3 26 26 H 1.09001 * 109.46954 * 30.15127 * 1 2 3 27 27 H 1.08996 * 109.46770 * 150.15602 * 1 2 3 28 28 H 1.07997 * 126.66671 * 359.96575 * 3 2 1 29 29 H 0.97001 * 120.00396 * 359.97438 * 9 7 6 30 30 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 31 31 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 32 32 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 33 33 H 1.08996 * 112.94085 * 50.33617 * 13 10 9 34 34 H 1.08995 * 113.76589 * 336.34430 * 14 13 10 35 35 H 1.08995 * 113.76867 * 107.74965 * 14 13 10 36 36 H 0.96994 * 120.00624 * 179.97438 * 19 18 16 37 37 H 1.08998 * 113.77067 * 221.15214 * 24 15 14 38 38 H 1.09004 * 113.87049 * 89.76457 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5889 0.5773 -0.0050 5 7 3.5989 -0.6317 -0.0033 6 6 2.3837 -1.1206 0.0034 7 6 1.9993 -2.5532 0.0069 8 8 0.8256 -2.8671 0.0128 9 7 2.9518 -3.5065 0.0034 10 6 2.5721 -4.9215 0.0074 11 1 1.6620 -5.0550 -0.5774 12 6 2.3257 -5.3794 1.4463 13 6 3.6995 -5.7538 -0.6068 14 6 3.6960 -5.7620 -2.1462 15 7 3.9933 -7.2058 -2.0370 16 6 4.5957 -8.1253 -2.8535 17 1 4.6950 -9.1512 -2.5305 18 6 5.0790 -7.7391 -4.0961 19 7 4.9576 -6.4890 -4.4899 20 14 5.9002 -8.9936 -5.2102 21 1 4.9400 -10.0828 -5.5214 22 1 6.3246 -8.3334 -6.4708 23 1 7.0883 -9.5620 -4.5242 24 6 3.3826 -7.2578 -0.6945 25 1 -0.3633 0.0027 1.0276 26 1 -0.3633 0.8886 -0.5162 27 1 -0.3633 -0.8914 -0.5114 28 1 2.0560 2.1074 -0.0005 29 1 3.8889 -3.2559 -0.0017 30 1 1.5225 -4.7865 1.8838 31 1 3.2358 -5.2459 2.0309 32 1 2.0427 -6.4321 1.4491 33 1 4.6745 -5.5355 -0.1712 34 1 2.7217 -5.5459 -2.5844 35 1 4.5025 -5.1786 -2.5905 36 1 5.2955 -6.2189 -5.3580 37 1 3.9392 -7.8664 0.0181 38 1 2.3159 -7.4821 -0.7035 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970703524.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:36 Heat of formation + Delta-G solvation = 52.766621 kcal Electronic energy + Delta-G solvation = -21546.814661 eV Core-core repulsion = 18200.632630 eV Total energy + Delta-G solvation = -3346.182031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -46.13053 -41.10613 -39.70831 -36.39783 -35.64875 -34.29198 -33.46602 -31.68004 -29.40947 -29.08837 -26.84041 -26.00805 -25.37505 -22.93292 -22.65194 -21.59532 -20.83886 -19.22068 -18.83585 -18.76596 -17.60700 -17.42703 -16.93566 -16.07048 -15.84341 -15.76162 -15.07430 -14.82125 -14.71871 -14.21347 -14.13911 -14.07886 -13.48461 -13.33248 -13.29511 -13.13577 -12.93039 -12.71865 -12.59936 -12.36866 -12.07009 -11.79077 -11.59081 -11.38036 -11.35531 -11.18257 -10.88488 -10.38138 -10.19530 -8.95730 -7.92809 -5.27205 0.08809 0.73897 1.43288 1.47369 1.53514 1.82360 2.04215 2.31116 2.45619 2.88744 3.27455 3.33380 3.56676 3.70527 3.85276 3.93930 4.10883 4.22705 4.39518 4.46995 4.53290 4.69541 4.75829 4.79883 4.80732 4.84241 4.94324 4.96940 5.02061 5.21092 5.27730 5.31766 5.39115 5.49950 5.59602 5.90021 6.28732 6.88200 6.91151 7.08718 7.58249 8.53655 9.24099 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.024052 B = 0.003816 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.882820 B = 7336.677764 C = 7965.395439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.174 4.174 3 C -0.036 4.036 4 O 0.132 5.868 5 N -0.351 5.351 6 C -0.059 4.059 7 C 0.594 3.406 8 O -0.551 6.551 9 N -0.699 5.699 10 C 0.159 3.841 11 H 0.069 0.931 12 C -0.149 4.149 13 C -0.113 4.113 14 C 0.167 3.833 15 N -0.644 5.644 16 C -0.239 4.239 17 H 0.087 0.913 18 C -0.069 4.069 19 N -0.957 5.957 20 Si 0.981 3.019 21 H -0.277 1.277 22 H -0.295 1.295 23 H -0.273 1.273 24 C 0.134 3.866 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.278 0.722 29 H 0.410 0.590 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.005 0.995 35 H 0.038 0.962 36 H 0.248 0.752 37 H 0.067 0.933 38 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.416 16.354 13.537 22.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.180 4.180 3 C -0.116 4.116 4 O 0.054 5.946 5 N -0.050 5.050 6 C -0.216 4.216 7 C 0.379 3.621 8 O -0.429 6.429 9 N -0.350 5.350 10 C 0.054 3.946 11 H 0.087 0.913 12 C -0.207 4.207 13 C -0.132 4.132 14 C 0.041 3.959 15 N -0.371 5.371 16 C -0.367 4.367 17 H 0.105 0.895 18 C -0.262 4.262 19 N -0.606 5.606 20 Si 0.809 3.191 21 H -0.203 1.203 22 H -0.221 1.221 23 H -0.198 1.198 24 C 0.009 3.991 25 H 0.101 0.899 26 H 0.121 0.879 27 H 0.076 0.924 28 H 0.294 0.706 29 H 0.246 0.754 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.119 0.881 34 H 0.023 0.977 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.890 15.308 13.265 21.095 hybrid contribution 0.017 -0.462 -1.193 1.279 sum -5.873 14.847 12.072 20.016 Atomic orbital electron populations 1.20217 0.85647 1.03977 1.03595 1.21719 1.00065 0.89947 1.06230 1.26707 0.80385 1.02720 1.01804 1.84744 1.30912 1.14292 1.64696 1.74197 1.21690 0.92759 1.16358 1.23530 0.90764 0.96930 1.10378 1.17164 0.85395 0.83282 0.76292 1.90735 1.18346 1.82304 1.51468 1.45964 1.09953 1.06228 1.72841 1.20994 0.97253 0.78267 0.98081 0.91322 1.22056 1.02285 1.02361 0.93996 1.23469 0.98485 0.95636 0.95642 1.22167 0.96012 0.85517 0.92184 1.46401 1.66234 1.07182 1.17234 1.19461 1.29122 0.91158 0.96963 0.89513 1.25683 1.02809 0.98528 0.99158 1.70022 1.52428 1.17268 1.20868 0.85111 0.78522 0.77799 0.77662 1.20329 1.22113 1.19823 1.22673 0.96663 0.93422 0.86392 0.89923 0.87858 0.92415 0.70616 0.75428 0.92818 0.91021 0.89960 0.88128 0.97748 0.94371 0.94330 0.91472 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.01 71.24 0.71 -0.59 16 2 C -0.17 -3.49 6.34 -19.53 -0.12 -3.62 16 3 C -0.04 -0.45 12.24 67.14 0.82 0.37 16 4 O 0.13 2.53 11.18 71.84 0.80 3.33 16 5 N -0.35 -9.15 11.84 -49.50 -0.59 -9.73 16 6 C -0.06 -1.61 7.19 42.96 0.31 -1.30 16 7 C 0.59 19.23 7.81 86.93 0.68 19.91 16 8 O -0.55 -20.14 15.00 -3.70 -0.06 -20.20 16 9 N -0.70 -21.62 5.07 -444.95 -2.26 -23.88 16 10 C 0.16 5.05 2.38 44.99 0.11 5.15 16 11 H 0.07 2.52 7.41 -2.39 -0.02 2.50 16 12 C -0.15 -3.78 9.31 71.98 0.67 -3.11 16 13 C -0.11 -4.13 3.47 -10.13 -0.04 -4.17 16 14 C 0.17 8.30 7.08 86.44 0.61 8.91 16 15 N -0.64 -34.02 3.70 -716.14 -2.65 -36.67 16 16 C -0.24 -13.76 10.70 84.03 0.90 -12.87 16 17 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 18 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 19 N -0.96 -59.84 11.39 21.65 0.25 -59.60 16 20 Si 0.98 46.71 29.55 68.60 2.03 48.74 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 24 C 0.13 5.29 7.64 86.49 0.66 5.95 16 25 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.06 1.34 6.89 -2.39 -0.02 1.33 16 28 H 0.28 -0.04 8.06 -2.91 -0.02 -0.06 16 29 H 0.41 11.91 8.36 -92.71 -0.78 11.13 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.91 7.52 -2.38 -0.02 1.89 16 33 H 0.10 3.50 8.14 -2.39 -0.02 3.48 16 34 H 0.00 0.25 7.99 -2.39 -0.02 0.23 16 35 H 0.04 2.13 7.17 -2.39 -0.02 2.11 16 36 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.05 1.81 8.10 -2.38 -0.02 1.79 16 Total: -1.00 -76.70 325.23 3.61 -73.09 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.30 Total: 13.86 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 5.78 Total: 11.06 kcal Atomic # 7 Polarization: -124.63 SS G_CDS: -5.25 Total: -129.88 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: 0.75 Total: -16.87 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -76.70 3.61 -73.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970703524.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.852 kcal (2) G-P(sol) polarization free energy of solvation -76.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds