Wall clock time and date at job start Tue Mar 31 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41263 * 126.70455 * 2 1 4 4 C 1.36830 * 103.84432 * 180.02562 * 3 2 1 5 5 C 1.47507 * 126.94427 * 180.02562 * 4 3 2 6 6 O 1.21587 * 119.99959 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00145 * 179.72068 * 5 4 3 8 8 C 1.47020 * 125.64785 * 0.29626 * 7 5 4 9 9 C 1.54318 * 107.27363 * 181.02418 * 8 7 5 10 10 C 1.55160 * 102.94170 * 22.19115 * 9 8 7 11 11 H 1.08996 * 111.00159 * 82.61210 * 10 9 8 12 12 N 1.46500 * 111.00441 * 206.42665 * 10 9 8 13 13 C 1.46499 * 120.00262 * 60.00146 * 12 10 9 14 14 C 1.36938 * 119.99836 * 240.00440 * 12 10 9 15 15 H 1.08000 * 120.00047 * 23.24192 * 14 12 10 16 16 C 1.38810 * 119.99809 * 203.24832 * 14 12 10 17 17 N 1.31618 * 120.00373 * 13.75616 * 16 14 12 18 18 Si 1.86803 * 119.99963 * 193.75579 * 16 14 12 19 19 H 1.48503 * 109.47169 * 59.99607 * 18 16 14 20 20 H 1.48498 * 109.47370 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47305 * 299.99939 * 18 16 14 22 22 C 1.47423 * 125.65191 * 179.97438 * 7 5 4 23 23 O 1.34643 * 106.11123 * 0.25835 * 4 3 2 24 24 N 1.20892 * 111.46650 * 359.53268 * 23 4 3 25 25 H 1.09001 * 109.47212 * 89.99641 * 1 2 3 26 26 H 1.08999 * 109.47439 * 209.99739 * 1 2 3 27 27 H 1.09004 * 109.47151 * 330.00063 * 1 2 3 28 28 H 1.07998 * 128.07899 * 359.97438 * 3 2 1 29 29 H 1.08999 * 109.88378 * 300.44021 * 8 7 5 30 30 H 1.09006 * 109.88111 * 61.45310 * 8 7 5 31 31 H 1.09001 * 110.72404 * 140.55998 * 9 8 7 32 32 H 1.09006 * 110.71804 * 263.65382 * 9 8 7 33 33 H 1.09001 * 109.47314 * 95.15900 * 13 12 10 34 34 H 1.09008 * 109.47134 * 215.16105 * 13 12 10 35 35 H 1.08997 * 109.46743 * 335.15948 * 13 12 10 36 36 H 0.96999 * 120.00278 * 180.02562 * 17 16 14 37 37 H 1.09001 * 110.36672 * 274.75303 * 22 7 5 38 38 H 1.09004 * 110.36551 * 37.07087 * 22 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0006 5 6 4.8871 1.3429 -0.0003 6 8 4.8829 2.5587 0.0000 7 7 6.0566 0.6730 0.0047 8 6 6.2063 -0.7895 0.0040 9 6 7.7185 -1.0954 0.0374 10 6 8.3234 0.2066 0.6260 11 1 8.2593 0.2100 1.7140 12 7 9.7081 0.3889 0.1838 13 6 10.0122 0.5008 -1.2449 14 6 10.7183 0.4547 1.1060 15 1 10.5866 0.0149 2.0835 16 6 11.9115 1.0869 0.7844 17 7 11.9842 1.8510 -0.2849 18 14 13.4142 0.8533 1.8692 19 1 13.7724 -0.5871 1.9153 20 1 14.5517 1.6293 1.3131 21 1 13.1130 1.3326 3.2421 22 6 7.3976 1.2854 0.0050 23 8 3.4539 -0.7361 -0.0067 24 7 2.2847 -1.0433 -0.0005 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 2.0679 2.1747 -0.0004 29 1 5.7232 -1.2121 0.8850 30 1 5.7611 -1.2073 -0.8990 31 1 7.9259 -1.9453 0.6875 32 1 8.0970 -1.2794 -0.9681 33 1 10.0612 1.5531 -1.5247 34 1 10.9712 0.0250 -1.4507 35 1 9.2305 0.0073 -1.8224 36 1 12.8181 2.2924 -0.5098 37 1 7.7095 1.5160 -1.0136 38 1 7.4027 2.1871 0.6175 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971067044.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:41 Heat of formation + Delta-G solvation = 59.974651 kcal Electronic energy + Delta-G solvation = -21758.381805 eV Core-core repulsion = 18412.512338 eV Total energy + Delta-G solvation = -3345.869468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.13827 -39.81219 -37.58195 -35.19413 -34.78150 -32.38313 -31.50269 -29.84554 -28.98137 -28.02360 -26.10494 -24.80102 -23.18885 -22.62645 -21.91608 -19.57399 -19.37030 -17.95131 -17.65605 -17.07727 -16.32146 -15.93511 -15.55162 -14.74411 -14.26331 -14.00678 -13.68128 -13.46714 -13.40699 -13.30941 -13.16860 -12.72408 -12.51920 -12.43699 -12.03574 -11.57847 -11.51253 -10.93798 -10.82592 -10.54653 -10.53298 -10.34256 -10.29935 -10.24793 -9.91335 -9.88440 -9.83685 -8.64431 -8.48182 -6.84871 -5.79895 -3.28146 0.71044 1.85085 2.51511 3.00765 3.12912 3.36234 3.42011 3.42713 3.85281 4.20992 4.43480 4.68852 4.84765 4.95628 5.08435 5.14438 5.23477 5.29659 5.34363 5.44882 5.50930 5.56512 5.75976 5.78792 5.86488 5.97233 6.22829 6.32058 6.39079 6.54486 6.71880 6.82045 7.28726 7.49464 7.66041 7.74630 7.82972 8.05849 8.31490 9.14578 9.76704 10.25325 11.24316 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.045119 B = 0.003513 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.435588 B = 7968.092820 C = 8175.783590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.008 3.992 3 C -0.160 4.160 4 C -0.067 4.067 5 C 0.609 3.391 6 O -0.518 6.518 7 N -0.597 5.597 8 C 0.099 3.901 9 C -0.152 4.152 10 C 0.173 3.827 11 H 0.081 0.919 12 N -0.583 5.583 13 C 0.157 3.843 14 C -0.264 4.264 15 H 0.070 0.930 16 C 0.007 3.993 17 N -0.903 5.903 18 Si 0.908 3.092 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.087 3.913 23 O 0.119 5.881 24 N -0.351 5.351 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.182 0.818 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.003 0.997 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.586 -4.913 -0.639 19.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.149 4.149 3 C -0.183 4.183 4 C -0.133 4.133 5 C 0.394 3.606 6 O -0.396 6.396 7 N -0.329 5.329 8 C -0.024 4.024 9 C -0.192 4.192 10 C 0.062 3.938 11 H 0.099 0.901 12 N -0.303 5.303 13 C 0.013 3.987 14 C -0.393 4.393 15 H 0.088 0.912 16 C -0.193 4.193 17 N -0.547 5.547 18 Si 0.737 3.263 19 H -0.210 1.210 20 H -0.216 1.216 21 H -0.208 1.208 22 C -0.037 4.037 23 O 0.047 5.953 24 N -0.054 5.054 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.200 0.800 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.022 0.978 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.660 -5.426 -0.721 19.447 hybrid contribution 0.718 0.759 0.436 1.132 sum -17.942 -4.668 -0.285 18.541 Atomic orbital electron populations 1.20190 0.85365 1.04037 1.03609 1.23634 0.99313 0.88416 1.03587 1.22838 0.89938 1.01691 1.03800 1.24363 0.97403 0.83790 1.07730 1.16169 0.80243 0.85726 0.78482 1.90874 1.85587 1.11599 1.51492 1.48448 1.06011 1.08660 1.69800 1.22202 0.98957 0.79472 1.01755 1.23241 0.91704 1.01125 1.03179 1.21529 0.84753 0.90106 0.97390 0.90085 1.43855 0.99629 1.83843 1.02976 1.20836 0.96360 0.99219 0.82304 1.19170 0.92987 1.30724 0.96463 0.91184 1.25065 0.99381 0.96828 0.97988 1.70055 1.25944 1.31374 1.27281 0.86298 0.82393 0.77675 0.79923 1.20964 1.21603 1.20828 1.23315 0.78861 0.98973 1.02536 1.85055 1.21137 1.22305 1.66829 1.73726 0.89477 1.24465 1.17706 0.89954 0.90335 0.89749 0.80022 0.91149 0.91379 0.90266 0.90348 0.94781 0.93845 0.97844 0.93496 0.90681 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.47 36.01 0.38 -0.12 16 2 C 0.01 0.09 7.31 -82.17 -0.60 -0.51 16 3 C -0.16 -1.86 10.92 -38.94 -0.43 -2.28 16 4 C -0.07 -0.91 7.08 -36.32 -0.26 -1.17 16 5 C 0.61 9.90 7.85 -12.48 -0.10 9.80 16 6 O -0.52 -9.88 17.17 5.29 0.09 -9.79 16 7 N -0.60 -9.57 3.32 -171.62 -0.57 -10.14 16 8 C 0.10 1.35 5.58 -3.07 -0.02 1.33 16 9 C -0.15 -2.34 6.49 -24.90 -0.16 -2.50 16 10 C 0.17 3.31 3.55 -65.66 -0.23 3.07 16 11 H 0.08 1.56 7.96 -51.93 -0.41 1.15 16 12 N -0.58 -13.76 2.96 -170.89 -0.51 -14.26 16 13 C 0.16 3.65 7.56 59.85 0.45 4.10 16 14 C -0.26 -6.94 9.60 -15.06 -0.14 -7.08 16 15 H 0.07 1.79 7.87 -52.49 -0.41 1.37 16 16 C 0.01 0.18 5.08 -17.43 -0.09 0.09 16 17 N -0.90 -25.56 10.77 55.49 0.60 -24.97 16 18 Si 0.91 21.24 29.58 -169.99 -5.03 16.22 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.09 1.60 6.46 -2.41 -0.02 1.59 16 23 O 0.12 1.57 9.02 15.55 0.14 1.71 16 24 N -0.35 -4.52 12.04 33.52 0.40 -4.12 16 25 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 29 H 0.07 0.87 7.72 -51.93 -0.40 0.47 16 30 H 0.07 0.84 7.83 -51.93 -0.41 0.44 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.24 6.47 -51.93 -0.34 0.91 16 33 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 34 H 0.04 1.09 7.38 -51.92 -0.38 0.70 16 35 H 0.00 0.06 6.37 -51.93 -0.33 -0.27 16 36 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.07 1.47 6.96 -51.93 -0.36 1.10 16 38 H 0.08 1.57 8.03 -51.93 -0.42 1.15 16 LS Contribution 316.99 15.07 4.78 4.78 Total: -1.00 -30.28 316.99 -6.40 -36.68 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.09 Total: -2.44 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -1.21 Total: 6.32 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.07 Total: -53.48 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.23 Total: -8.07 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.28 -6.40 -36.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971067044.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.653 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds