Wall clock time and date at job start Tue Mar 31 2020 02:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33689 * 126.27397 * 2 1 4 4 C 1.30616 * 109.00167 * 180.02562 * 3 2 1 5 5 O 1.33675 * 109.15045 * 359.72694 * 4 3 2 6 6 C 1.35346 * 107.67907 * 0.43578 * 5 4 3 7 7 C 1.46726 * 126.63803 * 179.84037 * 6 5 4 8 8 O 1.21689 * 119.99912 * 179.69083 * 7 6 5 9 9 N 1.34777 * 120.00068 * 359.68414 * 7 6 5 10 10 C 1.47425 * 125.64882 * 0.04448 * 9 7 6 11 11 C 1.54909 * 104.83015 * 204.09094 * 10 9 7 12 12 C 1.55158 * 101.58373 * 322.99259 * 11 10 9 13 13 H 1.09008 * 110.86877 * 277.06540 * 12 11 10 14 14 N 1.46495 * 110.71882 * 153.86526 * 12 11 10 15 15 C 1.46499 * 120.00399 * 305.02113 * 14 12 11 16 16 C 1.36946 * 119.99853 * 125.02118 * 14 12 11 17 17 H 1.08003 * 120.00068 * 339.54456 * 16 14 12 18 18 C 1.38805 * 119.99760 * 159.26334 * 16 14 12 19 19 N 1.31618 * 120.00465 * 345.39950 * 18 16 14 20 20 Si 1.86803 * 119.99675 * 165.40088 * 18 16 14 21 21 H 1.48500 * 109.47324 * 94.72303 * 20 18 16 22 22 H 1.48510 * 109.46837 * 214.72001 * 20 18 16 23 23 H 1.48500 * 109.47379 * 334.71709 * 20 18 16 24 24 C 1.47024 * 125.64485 * 180.02562 * 9 7 6 25 25 H 1.09002 * 109.46861 * 269.95739 * 1 2 3 26 26 H 1.08991 * 109.47085 * 29.96100 * 1 2 3 27 27 H 1.09007 * 109.46903 * 149.96194 * 1 2 3 28 28 H 1.07999 * 125.42908 * 179.97438 * 4 3 2 29 29 H 1.08998 * 110.36516 * 322.92707 * 10 9 7 30 30 H 1.09000 * 110.36763 * 85.14110 * 10 9 7 31 31 H 1.08999 * 111.00543 * 204.91458 * 11 10 9 32 32 H 1.08998 * 111.00424 * 81.06777 * 11 10 9 33 33 H 1.08991 * 109.47126 * 264.83817 * 15 14 12 34 34 H 1.09006 * 109.46756 * 24.83767 * 15 14 12 35 35 H 1.08998 * 109.47240 * 144.83269 * 15 14 12 36 36 H 0.96996 * 120.00602 * 179.97438 * 19 18 16 37 37 H 1.09003 * 109.88173 * 59.56670 * 24 9 7 38 38 H 1.08991 * 110.01151 * 298.46789 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6900 -0.0006 5 8 3.5891 -0.6460 0.0051 6 6 2.3137 -1.0991 -0.0005 7 6 1.8828 -2.5017 -0.0006 8 8 0.6967 -2.7738 -0.0004 9 7 2.8006 -3.4887 -0.0012 10 6 4.2630 -3.3021 -0.0008 11 6 4.8294 -4.6075 -0.6129 12 6 3.8624 -5.6709 -0.0284 13 1 4.1646 -5.9588 0.9786 14 7 3.7933 -6.8446 -0.9023 15 6 3.4415 -6.6860 -2.3155 16 6 4.0576 -8.0901 -0.3981 17 1 4.6233 -8.1938 0.5161 18 6 3.5934 -9.2191 -1.0588 19 7 2.6716 -9.1036 -1.9912 20 14 4.2770 -10.9025 -0.6248 21 1 3.3937 -11.5524 0.3765 22 1 4.3397 -11.7418 -1.8483 23 1 5.6412 -10.7516 -0.0577 24 6 2.5091 -4.9297 -0.0019 25 1 -0.3633 -0.0008 1.0277 26 1 -0.3633 0.8903 -0.5132 27 1 -0.3633 -0.8897 -0.5145 28 1 4.4044 1.3444 -0.0011 29 1 4.5361 -2.4449 -0.6161 30 1 4.6281 -3.1690 1.0176 31 1 5.8520 -4.7839 -0.2792 32 1 4.7737 -4.5850 -1.7012 33 1 2.3723 -6.8535 -2.4447 34 1 3.6932 -5.6767 -2.6415 35 1 3.9973 -7.4096 -2.9117 36 1 2.3474 -9.8925 -2.4532 37 1 1.9266 -5.1897 -0.8858 38 1 1.9567 -5.1990 0.8983 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971282572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:37:57 Heat of formation + Delta-G solvation = 24.772202 kcal Electronic energy + Delta-G solvation = -22032.425157 eV Core-core repulsion = 18685.029196 eV Total energy + Delta-G solvation = -3347.395960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.57365 -39.69669 -37.58449 -35.53892 -34.76676 -31.96755 -31.50135 -29.87351 -28.53694 -27.41962 -26.09296 -24.47262 -23.06580 -22.34309 -21.66823 -19.90392 -19.28137 -17.50419 -17.19146 -16.94886 -16.69602 -15.86012 -15.40687 -14.89339 -14.67741 -14.08383 -13.52169 -13.42273 -13.34705 -13.08976 -12.73659 -12.60398 -12.28544 -12.21570 -11.94549 -11.57389 -11.25342 -11.01377 -10.95780 -10.81867 -10.62460 -10.50510 -10.33148 -10.08488 -9.87818 -9.85618 -9.12164 -8.61561 -8.41093 -6.89305 -5.80363 -3.26237 0.73725 2.28025 2.34199 3.12168 3.13300 3.34478 3.41605 3.43263 3.86355 4.42518 4.52115 4.60277 4.94365 5.13629 5.21460 5.31828 5.36496 5.50777 5.54333 5.57170 5.72874 5.74379 5.81935 5.86642 5.95745 6.18419 6.26203 6.29729 6.42017 6.56449 6.75728 6.79600 7.29803 7.34806 7.59807 7.66120 7.74382 8.09593 8.29334 9.13752 9.76500 10.24230 11.24211 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039272 B = 0.003863 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.805036 B = 7246.446048 C = 7636.942896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.071 3.929 3 N -0.494 5.494 4 C 0.191 3.809 5 O -0.186 6.186 6 C -0.100 4.100 7 C 0.612 3.388 8 O -0.519 6.519 9 N -0.600 5.600 10 C 0.100 3.900 11 C -0.153 4.153 12 C 0.173 3.827 13 H 0.081 0.919 14 N -0.585 5.585 15 C 0.159 3.841 16 C -0.263 4.263 17 H 0.072 0.928 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.086 3.914 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.254 0.746 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.002 0.998 35 H 0.045 0.955 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 17.477 3.415 18.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.053 4.053 3 N -0.224 5.224 4 C -0.034 4.034 5 O -0.072 6.072 6 C -0.155 4.155 7 C 0.399 3.601 8 O -0.397 6.397 9 N -0.332 5.332 10 C -0.023 4.023 11 C -0.193 4.193 12 C 0.062 3.938 13 H 0.099 0.901 14 N -0.305 5.305 15 C 0.015 3.985 16 C -0.393 4.393 17 H 0.090 0.910 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.204 1.204 24 C -0.038 4.038 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.115 0.885 28 H 0.270 0.730 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.021 0.979 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.568 17.750 3.279 18.233 hybrid contribution 0.716 -1.371 0.181 1.557 sum 3.284 16.379 3.461 17.060 Atomic orbital electron populations 1.20381 0.85356 1.04346 1.03659 1.22034 0.98382 0.86315 0.98557 1.70325 1.01375 1.31535 1.19117 1.28302 0.97567 0.79879 0.97696 1.84623 1.29682 1.24009 1.68892 1.23059 0.81226 0.96304 1.14893 1.16015 0.85110 0.80782 0.78211 1.90861 1.15336 1.81585 1.51943 1.48451 1.07004 1.07355 1.70372 1.22457 0.79353 0.99481 1.00984 1.23368 1.00287 0.93843 1.01755 1.21368 0.90273 0.87028 0.95102 0.90127 1.43963 1.80115 1.01704 1.04742 1.20821 0.99506 0.94594 0.83591 1.19243 1.28322 0.82323 1.09379 0.91028 1.25009 0.96973 0.98145 0.99262 1.70090 1.28629 1.28498 1.27523 0.86223 0.78752 0.84014 0.77413 1.21422 1.21545 1.20406 1.23067 1.01613 0.76491 1.02599 0.90108 0.90615 0.88549 0.73012 0.90684 0.91381 0.90151 0.90334 0.95002 0.97943 0.93596 0.93581 0.90433 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 9.87 36.01 0.36 -0.60 16 2 C 0.07 0.96 7.16 -82.47 -0.59 0.37 16 3 N -0.49 -6.03 11.26 -10.88 -0.12 -6.15 16 4 C 0.19 1.74 13.21 52.25 0.69 2.43 16 5 O -0.19 -2.18 8.07 4.39 0.04 -2.14 16 6 C -0.10 -1.43 6.96 -36.84 -0.26 -1.69 16 7 C 0.61 10.38 7.82 -12.83 -0.10 10.28 16 8 O -0.52 -10.02 15.12 5.20 0.08 -9.94 16 9 N -0.60 -9.94 3.33 -172.04 -0.57 -10.52 16 10 C 0.10 1.37 6.18 -2.53 -0.02 1.35 16 11 C -0.15 -2.36 6.59 -24.58 -0.16 -2.52 16 12 C 0.17 3.31 3.45 -66.10 -0.23 3.09 16 13 H 0.08 1.51 7.91 -51.92 -0.41 1.10 16 14 N -0.59 -13.94 2.94 -171.39 -0.50 -14.44 16 15 C 0.16 3.79 7.73 59.85 0.46 4.25 16 16 C -0.26 -6.93 9.63 -15.06 -0.15 -7.08 16 17 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 18 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 19 N -0.90 -25.76 10.67 55.49 0.59 -25.17 16 20 Si 0.91 21.24 29.58 -169.99 -5.03 16.21 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C 0.09 1.64 6.50 -3.06 -0.02 1.62 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.27 6.47 -51.93 -0.34 0.94 16 28 H 0.25 0.84 8.06 -52.49 -0.42 0.42 16 29 H 0.07 0.93 6.25 -51.93 -0.32 0.60 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.30 6.14 -51.93 -0.32 0.98 16 33 H 0.03 0.84 7.31 -51.93 -0.38 0.46 16 34 H 0.00 0.05 6.13 -51.93 -0.32 -0.27 16 35 H 0.05 1.18 7.23 -51.93 -0.38 0.80 16 36 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.08 1.68 7.06 -51.93 -0.37 1.31 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 311.87 15.07 4.70 4.70 Total: -1.00 -31.65 311.87 -5.83 -37.48 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.91 Total: -1.59 kcal Atomic # 6 Polarization: 11.66 SS G_CDS: -0.10 Total: 11.56 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.61 Total: -56.28 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.11 Total: -12.08 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.65 -5.83 -37.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971282572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.253 kcal (2) G-P(sol) polarization free energy of solvation -31.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds