Wall clock time and date at job start Tue Mar 31 2020 02:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29935 * 125.37605 * 2 1 4 4 C 1.36068 * 108.47785 * 180.16258 * 3 2 1 5 5 C 1.47415 * 126.45179 * 179.82643 * 4 3 2 6 6 O 1.21615 * 120.00156 * 179.69175 * 5 4 3 7 7 N 1.34779 * 119.99900 * 359.68880 * 5 4 3 8 8 C 1.47424 * 125.64981 * 0.04592 * 7 5 4 9 9 C 1.54910 * 104.83272 * 204.09238 * 8 7 5 10 10 C 1.55160 * 101.58066 * 322.98680 * 9 8 7 11 11 H 1.08997 * 110.87259 * 277.07182 * 10 9 8 12 12 N 1.46499 * 110.71899 * 153.86642 * 10 9 8 13 13 C 1.46504 * 119.99903 * 305.02433 * 12 10 9 14 14 C 1.36933 * 120.00116 * 125.02768 * 12 10 9 15 15 H 1.08005 * 119.99447 * 334.73862 * 14 12 10 16 16 C 1.38815 * 120.00325 * 154.74051 * 14 12 10 17 17 N 1.31622 * 119.99508 * 4.29032 * 16 14 12 18 18 Si 1.86797 * 120.00036 * 184.28747 * 16 14 12 19 19 H 1.48505 * 109.46927 * 60.00157 * 18 16 14 20 20 H 1.48497 * 109.47163 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47291 * 300.00203 * 18 16 14 22 22 C 1.47027 * 125.64567 * 180.02562 * 7 5 4 23 23 C 1.36091 * 107.09829 * 359.56763 * 4 3 2 24 24 O 1.34046 * 125.37843 * 179.68096 * 2 1 3 25 25 H 1.09003 * 109.47171 * 180.29463 * 1 2 3 26 26 H 1.08995 * 109.47137 * 300.29754 * 1 2 3 27 27 H 1.09004 * 109.47135 * 60.30029 * 1 2 3 28 28 H 1.09002 * 110.36502 * 322.92893 * 8 7 5 29 29 H 1.08999 * 110.36758 * 85.14206 * 8 7 5 30 30 H 1.08997 * 111.00406 * 204.91220 * 9 8 7 31 31 H 1.08999 * 111.00441 * 81.06123 * 9 8 7 32 32 H 1.08998 * 109.46931 * 264.50866 * 13 12 10 33 33 H 1.09002 * 109.47415 * 24.50892 * 13 12 10 34 34 H 1.09004 * 109.46808 * 144.51152 * 13 12 10 35 35 H 0.97005 * 119.99235 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.87907 * 59.56177 * 22 7 5 37 37 H 1.09001 * 109.88021 * 298.39200 * 22 7 5 38 38 H 1.08003 * 126.52743 * 180.28507 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0037 5 6 4.7439 1.5439 -0.0085 6 8 5.8604 1.0619 -0.0058 7 7 4.5878 2.8826 -0.0161 8 6 3.2983 3.5973 -0.0192 9 6 3.6137 4.9817 -0.6386 10 6 5.0225 5.2701 -0.0557 11 1 4.9493 5.6861 0.9491 12 7 5.7725 6.1710 -0.9344 13 6 5.9621 5.8275 -2.3459 14 6 6.2963 7.3340 -0.4364 15 1 5.8517 7.7983 0.4315 16 6 7.3986 7.9162 -1.0470 17 7 7.8884 7.3976 -2.1531 18 14 8.1867 9.4356 -0.2988 19 1 8.6603 9.1228 1.0735 20 1 9.3386 9.8585 -1.1351 21 1 7.1881 10.5330 -0.2397 22 6 5.6752 3.8720 -0.0221 23 6 3.5660 -0.6969 0.0039 24 8 2.2831 -1.0929 0.0061 25 1 -0.3634 -1.0277 0.0053 26 1 -0.3633 0.5184 0.8873 27 1 -0.3633 0.5092 -0.8927 28 1 2.5708 3.0645 -0.6316 29 1 2.9253 3.7113 0.9986 30 1 2.8936 5.7305 -0.3088 31 1 3.6452 4.9248 -1.7267 32 1 6.9258 5.3346 -2.4736 33 1 5.1654 5.1564 -2.6668 34 1 5.9362 6.7361 -2.9475 35 1 8.6590 7.8043 -2.5796 36 1 6.2985 3.7324 -0.9054 37 1 6.2778 3.7661 0.8800 38 1 4.4361 -1.3367 0.0079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971402082.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:54:31 Heat of formation + Delta-G solvation = 4.029476 kcal Electronic energy + Delta-G solvation = -21837.392626 eV Core-core repulsion = 18489.097193 eV Total energy + Delta-G solvation = -3348.295432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.45462 -41.01789 -38.95016 -36.62481 -35.91504 -33.52389 -33.06256 -31.27500 -29.62098 -28.71443 -28.09609 -26.10077 -24.35442 -23.53792 -22.53591 -20.91572 -20.65996 -18.99345 -18.72765 -17.98276 -17.68129 -17.34899 -16.75140 -16.48714 -15.66839 -15.18829 -15.05684 -14.87837 -14.71420 -14.39437 -14.12574 -13.86602 -13.74754 -13.33149 -13.23712 -13.18265 -12.71315 -12.55992 -12.41877 -12.33879 -12.23002 -12.13693 -11.92194 -11.70549 -11.39876 -11.27273 -10.60526 -10.11932 -9.66853 -8.80614 -7.85121 -5.35491 0.03932 0.96246 1.47621 1.50900 1.56694 1.57624 1.86788 2.15014 2.50042 2.85190 3.28550 3.51657 3.57661 3.79266 3.85614 4.03413 4.27472 4.34819 4.40419 4.44128 4.53990 4.65990 4.73367 4.78135 4.79947 4.82573 4.96099 5.04886 5.17194 5.20656 5.30382 5.37145 5.42646 5.63954 5.74425 6.31950 6.35409 6.50233 6.93446 7.13896 7.82226 8.28660 9.18192 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.003734 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.399215 B = 7496.166658 C = 7834.176701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.203 3.797 3 N -0.483 5.483 4 C -0.093 4.093 5 C 0.601 3.399 6 O -0.583 6.583 7 N -0.598 5.598 8 C 0.118 3.882 9 C -0.141 4.141 10 C 0.168 3.832 11 H 0.086 0.914 12 N -0.604 5.604 13 C 0.185 3.815 14 C -0.270 4.270 15 H 0.081 0.919 16 C -0.050 4.050 17 N -0.940 5.940 18 Si 0.974 3.026 19 H -0.277 1.277 20 H -0.297 1.297 21 H -0.272 1.272 22 C 0.098 3.902 23 C 0.027 3.973 24 O -0.194 6.194 25 H 0.112 0.888 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.064 0.936 32 H -0.008 1.008 33 H 0.020 0.980 34 H 0.030 0.970 35 H 0.248 0.752 36 H 0.040 0.960 37 H 0.052 0.948 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.395 -15.418 4.999 24.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.006 4.006 3 N -0.213 5.213 4 C -0.211 4.211 5 C 0.390 3.610 6 O -0.464 6.464 7 N -0.329 5.329 8 C -0.004 4.004 9 C -0.181 4.181 10 C 0.059 3.941 11 H 0.104 0.896 12 N -0.326 5.326 13 C 0.041 3.959 14 C -0.400 4.400 15 H 0.098 0.902 16 C -0.245 4.245 17 N -0.586 5.586 18 Si 0.801 3.199 19 H -0.203 1.203 20 H -0.223 1.223 21 H -0.197 1.197 22 C -0.027 4.027 23 C -0.048 4.048 24 O -0.080 6.080 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.130 0.870 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.010 0.990 33 H 0.038 0.962 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -17.911 -15.020 4.889 23.881 hybrid contribution 1.698 0.213 0.018 1.711 sum -16.213 -14.807 4.907 22.499 Atomic orbital electron populations 1.20630 0.77316 1.06816 1.06572 1.27455 0.98215 0.77531 0.97426 1.70813 1.00261 1.30732 1.19531 1.21429 0.91742 0.93431 1.14504 1.16903 0.86806 0.80833 0.76466 1.90782 1.26218 1.75375 1.54044 1.48368 1.10169 1.04234 1.70115 1.22540 0.84334 0.91335 1.02187 1.23268 0.97669 0.96380 1.00760 1.21546 0.90869 0.86778 0.94870 0.89584 1.44063 1.62914 1.20304 1.05325 1.20503 0.94501 0.96763 0.84177 1.19612 1.07920 0.99942 1.12511 0.90180 1.25990 0.97576 1.02783 0.98129 1.70290 1.25556 1.42964 1.19783 0.85252 0.77766 0.79194 0.77678 1.20306 1.22341 1.19737 1.22591 0.90069 0.89956 1.00110 1.25618 0.85718 0.94876 0.98558 1.84438 1.16285 1.38077 1.69233 0.86953 0.86842 0.86996 0.87934 0.90112 0.88158 0.91734 0.98968 0.96156 0.95170 0.94263 0.94102 0.92977 0.73210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.24 0.75 0.41 16 2 C 0.20 3.48 8.30 88.39 0.73 4.21 16 3 N -0.48 -11.65 8.44 -293.04 -2.47 -14.12 16 4 C -0.09 -2.62 6.81 40.41 0.28 -2.34 16 5 C 0.60 21.92 7.85 86.66 0.68 22.60 16 6 O -0.58 -24.83 17.22 -4.08 -0.07 -24.90 16 7 N -0.60 -21.64 3.33 -815.64 -2.71 -24.36 16 8 C 0.12 3.45 6.14 86.86 0.53 3.98 16 9 C -0.14 -4.59 6.59 31.99 0.21 -4.38 16 10 C 0.17 6.85 3.45 46.18 0.16 7.01 16 11 H 0.09 3.37 7.94 -2.39 -0.02 3.35 16 12 N -0.60 -30.58 2.94 -696.12 -2.05 -32.62 16 13 C 0.19 9.59 7.69 127.77 0.98 10.58 16 14 C -0.27 -14.75 9.61 84.03 0.81 -13.94 16 15 H 0.08 4.12 7.82 -2.91 -0.02 4.10 16 16 C -0.05 -2.80 5.38 84.86 0.46 -2.35 16 17 N -0.94 -56.41 10.11 21.65 0.22 -56.19 16 18 Si 0.97 45.07 29.56 68.60 2.03 47.10 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 C 0.10 4.10 6.50 86.73 0.56 4.67 16 23 C 0.03 0.57 11.94 67.32 0.80 1.37 16 24 O -0.19 -3.51 10.73 0.40 0.00 -3.51 16 25 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 26 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.10 2.82 6.16 -2.39 -0.01 2.81 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 31 H 0.06 2.27 6.14 -2.39 -0.01 2.25 16 32 H -0.01 -0.47 7.38 -2.39 -0.02 -0.48 16 33 H 0.02 0.93 6.13 -2.39 -0.01 0.91 16 34 H 0.03 1.68 7.02 -2.39 -0.02 1.66 16 35 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 36 H 0.04 1.98 7.07 -2.39 -0.02 1.96 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.25 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -73.67 315.31 2.98 -70.69 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.07 Total: 6.09 kcal Atomic # 6 Polarization: 24.87 SS G_CDS: 6.96 Total: 31.82 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -7.02 Total: -127.29 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.07 Total: -28.41 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.67 2.98 -70.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971402082.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.723 kcal (2) G-P(sol) polarization free energy of solvation -73.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds