Wall clock time and date at job start Tue Mar 31 2020 01:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30013 * 127.33669 * 2 1 4 4 O 1.20656 * 112.29994 * 180.02562 * 3 2 1 5 5 C 1.33489 * 113.15851 * 359.97438 * 4 3 2 6 6 C 1.37359 * 106.34415 * 0.02562 * 5 4 3 7 7 C 1.47391 * 128.56569 * 179.97438 * 6 5 4 8 8 O 1.21613 * 120.00113 * 174.14863 * 7 6 5 9 9 N 1.34777 * 120.00394 * 354.14897 * 7 6 5 10 10 C 1.47420 * 125.65083 * 185.39490 * 9 7 6 11 11 C 1.54911 * 104.83283 * 204.08746 * 10 9 7 12 12 C 1.55152 * 101.58151 * 322.99139 * 11 10 9 13 13 H 1.09003 * 110.71862 * 276.96165 * 12 11 10 14 14 N 1.46496 * 110.72570 * 153.86107 * 12 11 10 15 15 C 1.46494 * 120.00274 * 300.00228 * 14 12 11 16 16 C 1.36946 * 120.00014 * 119.99330 * 14 12 11 17 17 H 1.08001 * 119.99955 * 319.33601 * 16 14 12 18 18 C 1.38810 * 119.99640 * 139.32526 * 16 14 12 19 19 N 1.31622 * 119.99694 * 160.35077 * 18 16 14 20 20 Si 1.86795 * 120.00557 * 340.35926 * 18 16 14 21 21 H 1.48499 * 109.47361 * 95.39945 * 20 18 16 22 22 H 1.48496 * 109.47262 * 215.40187 * 20 18 16 23 23 H 1.48508 * 109.46762 * 335.40034 * 20 18 16 24 24 C 1.47019 * 125.64476 * 5.07858 * 9 7 6 25 25 H 1.08998 * 109.47393 * 90.02230 * 1 2 3 26 26 H 1.09001 * 109.47288 * 210.02546 * 1 2 3 27 27 H 1.09000 * 109.47156 * 330.02593 * 1 2 3 28 28 H 1.08000 * 126.82739 * 180.02562 * 5 4 3 29 29 H 1.09004 * 110.36410 * 322.92049 * 10 9 7 30 30 H 1.08996 * 110.37219 * 85.14032 * 10 9 7 31 31 H 1.09007 * 111.00634 * 81.06017 * 11 10 9 32 32 H 1.08999 * 111.00808 * 204.87415 * 11 10 9 33 33 H 1.09003 * 109.47573 * 86.68156 * 15 14 12 34 34 H 1.08998 * 109.47188 * 206.68500 * 15 14 12 35 35 H 1.08999 * 109.47013 * 326.68511 * 15 14 12 36 36 H 0.96997 * 119.99903 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.88282 * 298.39863 * 24 9 7 38 38 H 1.09001 * 109.88528 * 59.56396 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6494 -0.6008 -0.0004 6 6 2.3991 -1.1697 -0.0003 7 6 2.0401 -2.5992 -0.0006 8 8 0.8758 -2.9338 0.1069 9 7 3.0019 -3.5357 -0.1201 10 6 2.7770 -4.9870 -0.2476 11 6 4.0873 -5.6376 0.2619 12 6 5.1550 -4.6456 -0.2700 13 1 5.3997 -4.8633 -1.3097 14 7 6.3595 -4.6845 0.5630 15 6 6.2759 -4.3531 1.9875 16 6 7.5636 -5.0308 0.0101 17 1 7.6162 -5.8346 -0.7093 18 6 8.7163 -4.3484 0.3741 19 7 9.8965 -4.8934 0.1679 20 14 8.5926 -2.6568 1.1568 21 1 8.6405 -2.7906 2.6349 22 1 9.7273 -1.8154 0.6989 23 1 7.3116 -2.0197 0.7586 24 6 4.4491 -3.2783 -0.1515 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3634 -0.8898 0.5142 27 1 -0.3633 0.8902 0.5134 28 1 4.5966 -1.1195 -0.0004 29 1 1.9345 -5.2961 0.3711 30 1 2.5996 -5.2534 -1.2895 31 1 4.1036 -5.6822 1.3510 32 1 4.2248 -6.6291 -0.1696 33 1 6.0138 -5.2469 2.5538 34 1 7.2394 -3.9757 2.3299 35 1 5.5123 -3.5903 2.1389 36 1 10.7020 -4.4165 0.4219 37 1 4.6963 -2.6554 -1.0111 38 1 4.7575 -2.7826 0.7690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972207794.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:52 Heat of formation + Delta-G solvation = 65.576365 kcal Electronic energy + Delta-G solvation = -22373.436215 eV Core-core repulsion = 19027.809656 eV Total energy + Delta-G solvation = -3345.626559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 3.35 seconds Orbital eigenvalues (eV) -44.98626 -39.96050 -37.70818 -35.05379 -34.54694 -32.65959 -31.81045 -30.29404 -28.77813 -28.35817 -26.38675 -25.27895 -23.47685 -22.11777 -21.40559 -19.91482 -19.60302 -17.80806 -17.49239 -17.14909 -16.78988 -16.21827 -15.73617 -15.22801 -14.40538 -14.26276 -13.63865 -13.59060 -13.42729 -13.31950 -12.98153 -12.73441 -12.60998 -12.44110 -12.26675 -11.90968 -11.84958 -11.44962 -11.08132 -10.92610 -10.72502 -10.38415 -10.15266 -10.05289 -9.99754 -9.83793 -9.78920 -8.69979 -8.60284 -6.99869 -6.16242 -3.66257 0.98080 1.68082 2.67318 3.14161 3.17762 3.19253 3.29017 3.35347 3.91794 4.19370 4.33805 4.49131 4.78835 4.85117 4.88028 5.04837 5.19586 5.25934 5.36174 5.40056 5.45835 5.50665 5.57541 5.62389 5.69205 5.89856 6.01257 6.08268 6.12177 6.22247 6.34678 6.45770 6.54792 6.64971 7.47005 7.87610 8.04692 8.12186 8.22251 8.77101 9.50211 9.89686 10.98291 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.020407 B = 0.005805 C = 0.004725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.752828 B = 4822.098895 C = 5924.675471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.068 3.932 3 N -0.363 5.363 4 O 0.094 5.906 5 C -0.007 4.007 6 C -0.252 4.252 7 C 0.609 3.391 8 O -0.540 6.540 9 N -0.606 5.606 10 C 0.111 3.889 11 C -0.150 4.150 12 C 0.173 3.827 13 H 0.093 0.907 14 N -0.595 5.595 15 C 0.106 3.894 16 C -0.279 4.279 17 H 0.081 0.919 18 C 0.041 3.959 19 N -0.895 5.895 20 Si 0.886 3.114 21 H -0.285 1.285 22 H -0.299 1.299 23 H -0.271 1.271 24 C 0.059 3.941 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.232 0.768 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.021 0.979 34 H 0.049 0.951 35 H 0.029 0.971 36 H 0.266 0.734 37 H 0.070 0.930 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.690 5.641 -0.303 14.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 N -0.071 5.071 4 O 0.035 5.965 5 C -0.089 4.089 6 C -0.259 4.259 7 C 0.398 3.602 8 O -0.419 6.419 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.190 4.190 12 C 0.064 3.936 13 H 0.111 0.889 14 N -0.317 5.317 15 C -0.039 4.039 16 C -0.408 4.408 17 H 0.099 0.901 18 C -0.161 4.161 19 N -0.535 5.535 20 Si 0.716 3.284 21 H -0.213 1.213 22 H -0.227 1.227 23 H -0.196 1.196 24 C -0.066 4.066 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.248 0.752 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.039 0.961 34 H 0.067 0.933 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.288 6.837 -0.219 15.841 hybrid contribution 0.299 0.180 0.497 0.607 sum -13.989 7.017 0.278 15.653 Atomic orbital electron populations 1.20259 0.84898 1.04370 1.03791 1.24843 0.98874 0.86327 0.99439 1.73658 0.89368 1.23733 1.20376 1.84581 1.21447 1.23320 1.67113 1.27257 1.01155 0.83683 0.96830 1.22286 0.92710 0.95551 1.15373 1.16415 0.84393 0.82641 0.76791 1.90755 1.18138 1.81763 1.51199 1.48296 1.06784 1.07515 1.71313 1.22272 0.99176 0.78530 1.01175 1.23334 0.93695 1.00027 1.01983 1.21541 0.86382 0.89221 0.96485 0.88927 1.44020 1.04650 1.80137 1.02890 1.21364 0.99331 0.97454 0.85716 1.18774 0.82349 1.13666 1.25997 0.90132 1.25584 0.95201 0.97549 0.97782 1.69835 0.97597 1.37450 1.48584 0.86802 0.77134 0.86069 0.78366 1.21314 1.22670 1.19621 1.23291 0.79031 1.02852 1.01439 0.89893 0.88544 0.90505 0.75173 0.90569 0.91248 0.90663 0.89763 0.96129 0.93271 0.95226 0.92409 0.91177 0.90788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.19 36.01 0.37 -0.47 16 2 C 0.07 0.94 7.58 -79.77 -0.60 0.34 16 3 N -0.36 -5.21 12.01 34.78 0.42 -4.79 16 4 O 0.09 1.28 11.06 18.66 0.21 1.48 16 5 C -0.01 -0.10 10.84 30.41 0.33 0.23 16 6 C -0.25 -3.60 6.40 -102.90 -0.66 -4.26 16 7 C 0.61 9.45 7.84 -12.53 -0.10 9.35 16 8 O -0.54 -9.42 15.90 5.27 0.08 -9.33 16 9 N -0.61 -8.76 3.33 -171.79 -0.57 -9.34 16 10 C 0.11 1.45 6.93 -2.53 -0.02 1.44 16 11 C -0.15 -2.11 6.66 -24.58 -0.16 -2.28 16 12 C 0.17 2.86 3.43 -66.09 -0.23 2.64 16 13 H 0.09 1.55 7.95 -51.93 -0.41 1.14 16 14 N -0.60 -12.30 2.44 -171.39 -0.42 -12.72 16 15 C 0.11 2.05 8.32 59.84 0.50 2.54 16 16 C -0.28 -7.04 9.85 -15.06 -0.15 -7.19 16 17 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 18 C 0.04 1.08 5.31 -17.43 -0.09 0.99 16 19 N -0.89 -25.58 13.97 55.49 0.78 -24.80 16 20 Si 0.89 20.26 25.01 -169.99 -4.25 16.01 16 21 H -0.29 -6.46 6.72 56.52 0.38 -6.08 16 22 H -0.30 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 24 C 0.06 0.86 4.64 -3.06 -0.01 0.84 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.13 7.03 -51.93 -0.37 0.77 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.23 2.66 4.87 -52.49 -0.26 2.41 16 29 H 0.08 1.00 7.99 -51.93 -0.41 0.58 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.11 7.21 -51.92 -0.37 0.74 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.02 0.38 7.97 -51.93 -0.41 -0.03 16 34 H 0.05 1.05 3.66 -51.93 -0.19 0.86 16 35 H 0.03 0.50 6.08 -51.93 -0.32 0.19 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.07 0.95 6.99 -51.93 -0.36 0.58 16 38 H 0.07 1.12 4.86 -51.93 -0.25 0.87 16 LS Contribution 306.18 15.07 4.61 4.61 Total: -1.00 -29.58 306.18 -4.60 -34.18 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -4.63 Total: 0.52 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.83 Total: 4.17 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: 0.20 Total: -51.64 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.29 Total: -7.85 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.25 Total: 16.01 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.58 -4.60 -34.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972207794.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.756 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.35 seconds