Wall clock time and date at job start Tue Mar 31 2020 02:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.41256 * 128.07622 * 2 1 4 4 N 1.30129 * 106.59284 * 180.23688 * 3 2 1 5 5 O 1.20888 * 111.97530 * 359.77893 * 4 3 2 6 6 C 1.34640 * 111.47513 * 0.02562 * 5 4 3 7 7 C 1.47504 * 126.94705 * 179.97438 * 6 5 4 8 8 O 1.21583 * 120.00138 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00309 * 0.02748 * 7 6 5 10 10 C 1.47424 * 125.64675 * 0.03773 * 9 7 6 11 11 C 1.54910 * 104.83272 * 204.09865 * 10 9 7 12 12 C 1.55151 * 101.58227 * 322.98547 * 11 10 9 13 13 H 1.08997 * 110.87831 * 277.07544 * 12 11 10 14 14 N 1.46499 * 110.71986 * 153.86598 * 12 11 10 15 15 C 1.46504 * 119.99903 * 305.02634 * 14 12 11 16 16 C 1.36933 * 120.00116 * 125.02970 * 14 12 11 17 17 H 1.08002 * 119.99612 * 334.74406 * 16 14 12 18 18 C 1.38815 * 120.00325 * 154.74051 * 16 14 12 19 19 N 1.31622 * 119.99508 * 4.29032 * 18 16 14 20 20 Si 1.86797 * 120.00036 * 184.28747 * 18 16 14 21 21 H 1.48502 * 109.46887 * 85.00282 * 20 18 16 22 22 H 1.48494 * 109.47106 * 205.00158 * 20 18 16 23 23 H 1.48498 * 109.47139 * 325.00161 * 20 18 16 24 24 C 1.47023 * 125.65218 * 180.02562 * 9 7 6 25 25 H 1.08997 * 109.46634 * 270.12844 * 1 2 3 26 26 H 1.08993 * 109.46988 * 30.12936 * 1 2 3 27 27 H 1.08996 * 109.46848 * 150.12884 * 1 2 3 28 28 H 1.08001 * 126.70328 * 359.97438 * 3 2 1 29 29 H 1.09002 * 110.36502 * 322.93519 * 10 9 7 30 30 H 1.09001 * 110.36687 * 85.14290 * 10 9 7 31 31 H 1.09003 * 111.00188 * 204.91623 * 11 10 9 32 32 H 1.09001 * 111.00549 * 81.06663 * 11 10 9 33 33 H 1.09002 * 109.47421 * 264.50872 * 15 14 12 34 34 H 1.09002 * 109.47415 * 24.50892 * 15 14 12 35 35 H 1.09004 * 109.46808 * 144.51152 * 15 14 12 36 36 H 0.97005 * 119.99235 * 180.02562 * 19 18 16 37 37 H 1.09003 * 109.88274 * 59.55582 * 24 9 7 38 38 H 1.08996 * 110.01025 * 298.46497 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6354 -0.0052 5 8 3.5995 -0.5734 -0.0039 6 6 2.3509 -1.0771 0.0018 7 6 1.9696 -2.5020 0.0044 8 8 0.7953 -2.8172 0.0093 9 7 2.9229 -3.4548 0.0014 10 6 4.3775 -3.2147 -0.0037 11 6 4.9892 -4.4990 -0.6169 12 6 4.0641 -5.5966 -0.0279 13 1 4.3802 -5.8722 0.9781 14 7 4.0349 -6.7729 -0.9006 15 6 3.6723 -6.6286 -2.3127 16 6 4.3464 -8.0074 -0.3964 17 1 4.9835 -8.0910 0.4716 18 6 3.8432 -9.1512 -1.0009 19 7 3.1367 -9.0543 -2.1073 20 14 4.1688 -10.8278 -0.2444 21 1 3.1514 -11.1050 0.8013 22 1 4.0914 -11.8702 -1.2991 23 1 5.5224 -10.8409 0.3661 24 6 2.6845 -4.9055 0.0029 25 1 -0.3632 0.0023 1.0277 26 1 -0.3633 0.8888 -0.5158 27 1 -0.3633 -0.8911 -0.5118 28 1 2.0947 2.1541 -0.0004 29 1 4.6168 -2.3486 -0.6207 30 1 4.7412 -3.0673 1.0132 31 1 6.0188 -4.6375 -0.2868 32 1 4.9287 -4.4796 -1.7051 33 1 2.6106 -6.8410 -2.4388 34 1 3.8801 -5.6095 -2.6389 35 1 4.2562 -7.3279 -2.9111 36 1 2.7848 -9.8536 -2.5294 37 1 2.1087 -5.1875 -0.8787 38 1 2.1456 -5.1940 0.9053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972658844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:23 Heat of formation + Delta-G solvation = 64.235940 kcal Electronic energy + Delta-G solvation = -22050.674238 eV Core-core repulsion = 18704.989554 eV Total energy + Delta-G solvation = -3345.684684 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.13337 -39.79491 -37.61864 -35.10855 -34.64522 -32.57931 -31.59105 -29.84457 -28.71081 -27.74033 -26.08127 -24.64636 -23.18584 -22.32633 -21.95398 -20.10382 -19.26201 -17.91348 -17.73526 -17.09540 -16.10700 -15.82011 -15.52042 -14.86473 -14.39249 -13.98059 -13.50699 -13.48917 -13.33901 -13.16471 -12.95102 -12.66740 -12.50114 -12.24387 -11.87980 -11.55450 -11.40684 -10.90402 -10.86607 -10.60355 -10.54431 -10.38951 -10.31075 -10.15875 -9.91136 -9.85313 -9.59008 -8.56809 -8.45186 -6.83868 -5.80177 -3.28630 0.72058 1.90869 2.53541 3.03690 3.17327 3.35971 3.41941 3.42706 3.99619 4.36100 4.42979 4.55138 4.87983 4.96984 5.06194 5.26258 5.30656 5.45505 5.50291 5.54137 5.59107 5.67870 5.79062 5.87833 5.97103 6.05768 6.27740 6.32714 6.42276 6.57953 6.80557 6.84795 7.42931 7.53402 7.71716 7.80903 7.83412 8.09558 8.34466 9.17784 9.77520 10.27079 11.23838 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037648 B = 0.003893 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.555117 B = 7191.428999 C = 7545.416370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.129 4.129 3 C -0.015 4.015 4 N -0.349 5.349 5 O 0.117 5.883 6 C -0.078 4.078 7 C 0.609 3.391 8 O -0.517 6.517 9 N -0.596 5.596 10 C 0.096 3.904 11 C -0.153 4.153 12 C 0.173 3.827 13 H 0.081 0.919 14 N -0.588 5.588 15 C 0.162 3.838 16 C -0.263 4.263 17 H 0.071 0.929 18 C 0.009 3.991 19 N -0.905 5.905 20 Si 0.907 3.093 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.086 3.914 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.197 0.803 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.026 0.974 34 H -0.004 1.004 35 H 0.056 0.944 36 H 0.254 0.746 37 H 0.078 0.922 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 17.463 3.744 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C -0.193 4.193 4 N -0.050 5.050 5 O 0.045 5.955 6 C -0.144 4.144 7 C 0.394 3.606 8 O -0.394 6.394 9 N -0.328 5.328 10 C -0.027 4.027 11 C -0.193 4.193 12 C 0.062 3.938 13 H 0.099 0.901 14 N -0.309 5.309 15 C 0.018 3.982 16 C -0.392 4.392 17 H 0.089 0.911 18 C -0.190 4.190 19 N -0.550 5.550 20 Si 0.736 3.264 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.037 4.037 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.214 0.786 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.044 0.956 34 H 0.014 0.986 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.225 17.693 3.594 18.056 hybrid contribution -0.664 -0.847 0.353 1.132 sum -0.889 16.846 3.947 17.325 Atomic orbital electron populations 1.20312 0.86391 1.04116 1.03356 1.21629 0.99044 0.90271 1.02409 1.24961 0.87847 1.01964 1.04544 1.73749 1.23149 0.91661 1.16398 1.85051 1.28269 1.15233 1.66979 1.24153 0.84405 0.96326 1.09477 1.16170 0.84993 0.80933 0.78485 1.90839 1.16765 1.80280 1.51510 1.48464 1.06874 1.07614 1.69897 1.22529 0.79223 0.99619 1.01335 1.23375 1.00184 0.93872 1.01845 1.21379 0.90162 0.87060 0.95152 0.90071 1.43907 1.79402 1.02585 1.04998 1.20907 0.99377 0.94189 0.83679 1.19222 1.24603 0.82653 1.12771 0.91087 1.25189 0.97727 0.98493 0.97543 1.70095 1.38557 1.27837 1.18476 0.86250 0.77960 0.83694 0.78492 1.21208 1.21651 1.20508 1.23075 1.01967 0.76114 1.02592 0.90280 0.90896 0.89083 0.78634 0.90505 0.90980 0.90078 0.90230 0.95552 0.98553 0.92580 0.93538 0.90400 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 9.96 36.01 0.36 -0.47 16 2 C -0.13 -1.51 6.37 -103.98 -0.66 -2.18 16 3 C -0.02 -0.16 12.14 -17.13 -0.21 -0.37 16 4 N -0.35 -4.42 12.04 30.45 0.37 -4.06 16 5 O 0.12 1.55 8.57 15.55 0.13 1.68 16 6 C -0.08 -1.08 7.06 -36.32 -0.26 -1.34 16 7 C 0.61 9.95 7.85 -12.48 -0.10 9.85 16 8 O -0.52 -9.65 15.44 5.29 0.08 -9.57 16 9 N -0.60 -9.62 3.33 -171.75 -0.57 -10.20 16 10 C 0.10 1.30 6.21 -2.53 -0.02 1.29 16 11 C -0.15 -2.36 6.59 -24.59 -0.16 -2.53 16 12 C 0.17 3.29 3.45 -66.10 -0.23 3.06 16 13 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 14 N -0.59 -13.97 2.94 -171.38 -0.50 -14.48 16 15 C 0.16 3.89 7.69 59.85 0.46 4.35 16 16 C -0.26 -6.90 9.61 -15.06 -0.14 -7.04 16 17 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 18 C 0.01 0.25 5.38 -17.43 -0.09 0.15 16 19 N -0.91 -25.60 10.11 55.49 0.56 -25.04 16 20 Si 0.91 21.19 29.56 -169.99 -5.02 16.16 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.09 1.60 6.50 -3.06 -0.02 1.58 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.09 1.08 6.73 -51.93 -0.35 0.73 16 28 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.08 0.97 6.28 -51.93 -0.33 0.64 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 1.32 6.14 -51.93 -0.32 1.00 16 33 H 0.03 0.69 7.38 -51.93 -0.38 0.30 16 34 H 0.00 -0.08 6.13 -51.93 -0.32 -0.40 16 35 H 0.06 1.46 7.02 -51.93 -0.36 1.10 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.08 1.64 7.07 -51.93 -0.37 1.28 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 311.72 15.07 4.70 4.70 Total: -1.00 -29.94 311.72 -6.25 -36.19 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.92 Total: -1.75 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.07 Total: 6.36 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.15 Total: -53.77 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: 0.22 Total: -7.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.94 -6.25 -36.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972658844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.424 kcal (2) G-P(sol) polarization free energy of solvation -29.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds