Wall clock time and date at job start Tue Mar 31 2020 02:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.41256 * 128.07622 * 2 1 4 4 N 1.30129 * 106.59284 * 180.23688 * 3 2 1 5 5 O 1.20888 * 111.97530 * 359.77893 * 4 3 2 6 6 C 1.34640 * 111.47513 * 0.02562 * 5 4 3 7 7 C 1.47504 * 126.94705 * 179.97438 * 6 5 4 8 8 O 1.21583 * 120.00138 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00309 * 0.02748 * 7 6 5 10 10 C 1.47424 * 125.64675 * 0.03773 * 9 7 6 11 11 C 1.54910 * 104.83272 * 204.09865 * 10 9 7 12 12 C 1.55151 * 101.58227 * 322.98547 * 11 10 9 13 13 H 1.08997 * 110.87831 * 277.07544 * 12 11 10 14 14 N 1.46499 * 110.71986 * 153.86598 * 12 11 10 15 15 C 1.46504 * 119.99903 * 305.02634 * 14 12 11 16 16 C 1.36933 * 120.00116 * 125.02970 * 14 12 11 17 17 H 1.08002 * 119.99612 * 334.74406 * 16 14 12 18 18 C 1.38815 * 120.00325 * 154.74051 * 16 14 12 19 19 N 1.31622 * 119.99508 * 4.29032 * 18 16 14 20 20 Si 1.86797 * 120.00036 * 184.28747 * 18 16 14 21 21 H 1.48502 * 109.46887 * 85.00282 * 20 18 16 22 22 H 1.48494 * 109.47106 * 205.00158 * 20 18 16 23 23 H 1.48498 * 109.47139 * 325.00161 * 20 18 16 24 24 C 1.47023 * 125.65218 * 180.02562 * 9 7 6 25 25 H 1.08997 * 109.46634 * 270.12844 * 1 2 3 26 26 H 1.08993 * 109.46988 * 30.12936 * 1 2 3 27 27 H 1.08996 * 109.46848 * 150.12884 * 1 2 3 28 28 H 1.08001 * 126.70328 * 359.97438 * 3 2 1 29 29 H 1.09002 * 110.36502 * 322.93519 * 10 9 7 30 30 H 1.09001 * 110.36687 * 85.14290 * 10 9 7 31 31 H 1.09003 * 111.00188 * 204.91623 * 11 10 9 32 32 H 1.09001 * 111.00549 * 81.06663 * 11 10 9 33 33 H 1.09002 * 109.47421 * 264.50872 * 15 14 12 34 34 H 1.09002 * 109.47415 * 24.50892 * 15 14 12 35 35 H 1.09004 * 109.46808 * 144.51152 * 15 14 12 36 36 H 0.97005 * 119.99235 * 180.02562 * 19 18 16 37 37 H 1.09003 * 109.88274 * 59.55582 * 24 9 7 38 38 H 1.08996 * 110.01025 * 298.46497 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5891 0.6354 -0.0052 5 8 3.5995 -0.5734 -0.0039 6 6 2.3509 -1.0771 0.0018 7 6 1.9696 -2.5020 0.0044 8 8 0.7953 -2.8172 0.0093 9 7 2.9229 -3.4548 0.0014 10 6 4.3775 -3.2147 -0.0037 11 6 4.9892 -4.4990 -0.6169 12 6 4.0641 -5.5966 -0.0279 13 1 4.3802 -5.8722 0.9781 14 7 4.0349 -6.7729 -0.9006 15 6 3.6723 -6.6286 -2.3127 16 6 4.3464 -8.0074 -0.3964 17 1 4.9835 -8.0910 0.4716 18 6 3.8432 -9.1512 -1.0009 19 7 3.1367 -9.0543 -2.1073 20 14 4.1688 -10.8278 -0.2444 21 1 3.1514 -11.1050 0.8013 22 1 4.0914 -11.8702 -1.2991 23 1 5.5224 -10.8409 0.3661 24 6 2.6845 -4.9055 0.0029 25 1 -0.3632 0.0023 1.0277 26 1 -0.3633 0.8888 -0.5158 27 1 -0.3633 -0.8911 -0.5118 28 1 2.0947 2.1541 -0.0004 29 1 4.6168 -2.3486 -0.6207 30 1 4.7412 -3.0673 1.0132 31 1 6.0188 -4.6375 -0.2868 32 1 4.9287 -4.4796 -1.7051 33 1 2.6106 -6.8410 -2.4388 34 1 3.8801 -5.6095 -2.6389 35 1 4.2562 -7.3279 -2.9111 36 1 2.7848 -9.8536 -2.5294 37 1 2.1087 -5.1875 -0.8787 38 1 2.1456 -5.1940 0.9053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972658844.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:22 Heat of formation + Delta-G solvation = 45.535176 kcal Electronic energy + Delta-G solvation = -22051.485164 eV Core-core repulsion = 18704.989554 eV Total energy + Delta-G solvation = -3346.495610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.04877 -41.13008 -39.06296 -36.67969 -35.71950 -33.81051 -33.12037 -31.34988 -29.84709 -28.98213 -28.06951 -25.96886 -24.52516 -23.68742 -23.01756 -21.19644 -20.84025 -19.01361 -18.92498 -18.81757 -17.54841 -17.09786 -16.80129 -16.48646 -15.68963 -15.25926 -15.03100 -14.78627 -14.39618 -14.29894 -14.21564 -14.07239 -13.85110 -13.55344 -13.30087 -13.12808 -12.72627 -12.54806 -12.37537 -12.30139 -12.19557 -12.08511 -11.80931 -11.48224 -11.44348 -11.36705 -10.60123 -10.58224 -9.77972 -8.78943 -7.83778 -5.33752 -0.32605 1.06099 1.39376 1.49986 1.51400 1.58965 1.82447 2.01917 2.51591 3.16810 3.29381 3.38178 3.55459 3.64636 3.82192 3.95310 3.99552 4.26770 4.28730 4.34170 4.43499 4.65553 4.73567 4.80821 4.81681 4.86989 4.91684 5.01527 5.10720 5.22195 5.27519 5.33439 5.45247 5.66655 5.78075 6.26261 6.33897 6.69788 7.00828 7.15823 7.84427 8.29901 9.19478 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037648 B = 0.003893 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.555117 B = 7191.428999 C = 7545.416370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.120 4.120 3 C 0.004 3.996 4 N -0.363 5.363 5 O 0.107 5.893 6 C -0.102 4.102 7 C 0.608 3.392 8 O -0.550 6.550 9 N -0.599 5.599 10 C 0.103 3.897 11 C -0.140 4.140 12 C 0.167 3.833 13 H 0.090 0.910 14 N -0.604 5.604 15 C 0.183 3.817 16 C -0.267 4.267 17 H 0.081 0.919 18 C -0.049 4.049 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.266 1.266 24 C 0.099 3.901 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.239 0.761 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.067 0.933 33 H -0.007 1.007 34 H 0.023 0.977 35 H 0.028 0.972 36 H 0.247 0.753 37 H 0.045 0.955 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.247 20.004 5.017 20.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.125 4.125 3 C -0.174 4.174 4 N -0.065 5.065 5 O 0.037 5.963 6 C -0.167 4.167 7 C 0.395 3.605 8 O -0.429 6.429 9 N -0.331 5.331 10 C -0.019 4.019 11 C -0.179 4.179 12 C 0.058 3.942 13 H 0.108 0.892 14 N -0.326 5.326 15 C 0.039 3.961 16 C -0.397 4.397 17 H 0.099 0.901 18 C -0.244 4.244 19 N -0.585 5.585 20 Si 0.798 3.202 21 H -0.213 1.213 22 H -0.224 1.224 23 H -0.190 1.190 24 C -0.026 4.026 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.084 0.916 28 H 0.255 0.745 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.012 0.988 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.753 20.261 4.898 20.859 hybrid contribution -0.982 -1.476 -0.017 1.773 sum -0.229 18.786 4.881 19.411 Atomic orbital electron populations 1.20395 0.85157 1.04517 1.04109 1.22034 0.99956 0.90136 1.00331 1.25576 0.86435 1.03315 1.02059 1.73741 1.24335 0.91359 1.17081 1.85030 1.27753 1.15613 1.67893 1.23748 0.85557 0.95260 1.12127 1.16441 0.84485 0.81973 0.77552 1.90818 1.18057 1.81178 1.52850 1.48461 1.08167 1.06427 1.70043 1.22646 0.77276 0.98997 1.02944 1.23243 1.00608 0.93085 1.00996 1.21571 0.91048 0.86447 0.95101 0.89212 1.44067 1.79637 1.03460 1.05415 1.20522 0.96747 0.94743 0.84124 1.19630 1.23987 0.83720 1.12377 0.90111 1.25947 0.98304 1.01982 0.98128 1.70287 1.40267 1.28080 1.19904 0.85240 0.78250 0.79415 0.77259 1.21278 1.22422 1.19026 1.22642 1.01127 0.78096 1.00736 0.89250 0.87549 0.91568 0.74502 0.88939 0.88530 0.87870 0.91419 0.98829 0.95889 0.95351 0.94318 0.93651 0.92260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.46 9.96 71.24 0.71 -0.76 16 2 C -0.12 -2.51 6.37 -19.45 -0.12 -2.64 16 3 C 0.00 0.07 12.14 85.69 1.04 1.11 16 4 N -0.36 -8.09 12.04 -58.56 -0.71 -8.80 16 5 O 0.11 2.59 8.57 65.84 0.56 3.16 16 6 C -0.10 -2.67 7.06 24.38 0.17 -2.50 16 7 C 0.61 19.74 7.85 86.69 0.68 20.42 16 8 O -0.55 -20.96 15.44 -3.98 -0.06 -21.02 16 9 N -0.60 -19.03 3.33 -815.57 -2.71 -21.74 16 10 C 0.10 2.58 6.21 86.86 0.54 3.12 16 11 C -0.14 -4.07 6.59 31.98 0.21 -3.86 16 12 C 0.17 6.26 3.45 46.18 0.16 6.42 16 13 H 0.09 3.20 7.94 -2.39 -0.02 3.18 16 14 N -0.60 -29.05 2.94 -696.13 -2.05 -31.10 16 15 C 0.18 9.07 7.69 127.77 0.98 10.06 16 16 C -0.27 -14.07 9.61 84.03 0.81 -13.27 16 17 H 0.08 4.01 7.82 -2.91 -0.02 3.99 16 18 C -0.05 -2.66 5.38 84.86 0.46 -2.21 16 19 N -0.94 -55.03 10.11 21.65 0.22 -54.81 16 20 Si 0.97 44.08 29.56 68.60 2.03 46.11 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 24 C 0.10 3.73 6.50 86.73 0.56 4.30 16 25 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.52 6.73 -2.39 -0.02 1.51 16 28 H 0.24 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.09 2.09 6.28 -2.39 -0.01 2.08 16 30 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.16 6.14 -2.39 -0.01 2.14 16 33 H -0.01 -0.37 7.38 -2.39 -0.02 -0.39 16 34 H 0.02 0.99 6.13 -2.39 -0.01 0.97 16 35 H 0.03 1.52 7.02 -2.39 -0.02 1.51 16 36 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 37 H 0.05 2.01 7.07 -2.39 -0.02 1.99 16 38 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -67.05 311.72 4.56 -62.49 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: 1.08 Total: 5.53 kcal Atomic # 6 Polarization: 13.99 SS G_CDS: 6.20 Total: 20.19 kcal Atomic # 7 Polarization: -111.21 SS G_CDS: -5.25 Total: -116.45 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.50 Total: -17.86 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -67.05 4.56 -62.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972658844.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.023 kcal (2) G-P(sol) polarization free energy of solvation -67.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds