Wall clock time and date at job start Tue Mar 31 2020 02:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41264 * 128.07174 * 2 1 4 4 N 1.30133 * 106.58663 * 179.97438 * 3 2 1 5 5 O 1.20881 * 111.98581 * 359.73793 * 4 3 2 6 6 C 1.34645 * 111.46550 * 0.42698 * 5 4 3 7 7 C 1.47510 * 126.94488 * 179.85589 * 6 5 4 8 8 O 1.21585 * 120.00070 * 179.40875 * 7 6 5 9 9 N 1.34777 * 120.00022 * 359.68172 * 7 6 5 10 10 C 1.47023 * 125.64768 * 359.74936 * 9 7 6 11 11 C 1.54323 * 107.27287 * 181.02163 * 10 9 7 12 12 C 1.55163 * 102.94058 * 22.19247 * 11 10 9 13 13 H 1.09002 * 111.00078 * 82.60912 * 12 11 10 14 14 N 1.46494 * 111.00430 * 206.42350 * 12 11 10 15 15 C 1.46505 * 119.99871 * 60.00035 * 14 12 11 16 16 C 1.36932 * 120.00182 * 240.00320 * 14 12 11 17 17 H 1.08001 * 119.99967 * 23.24448 * 16 14 12 18 18 C 1.38812 * 120.00304 * 203.24990 * 16 14 12 19 19 N 1.31626 * 120.00013 * 13.75271 * 18 16 14 20 20 Si 1.86801 * 120.00215 * 193.75900 * 18 16 14 21 21 H 1.48503 * 109.47430 * 59.99583 * 20 18 16 22 22 H 1.48500 * 109.47318 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46999 * 299.99545 * 20 18 16 24 24 C 1.47421 * 125.65016 * 179.44181 * 9 7 6 25 25 H 1.09002 * 109.47264 * 270.04630 * 1 2 3 26 26 H 1.08999 * 109.47535 * 30.04991 * 1 2 3 27 27 H 1.08997 * 109.46756 * 150.04755 * 1 2 3 28 28 H 1.08000 * 126.71083 * 359.93307 * 3 2 1 29 29 H 1.09000 * 109.88463 * 300.44400 * 10 9 7 30 30 H 1.09007 * 109.88274 * 61.45100 * 10 9 7 31 31 H 1.08993 * 110.71997 * 140.55500 * 11 10 9 32 32 H 1.09000 * 110.71790 * 263.65647 * 11 10 9 33 33 H 1.09001 * 109.47024 * 95.16047 * 15 14 12 34 34 H 1.09007 * 109.46794 * 215.15695 * 15 14 12 35 35 H 1.08995 * 109.47328 * 335.16096 * 15 14 12 36 36 H 0.97000 * 119.99713 * 180.02562 * 19 18 16 37 37 H 1.09007 * 110.36361 * 274.74949 * 24 9 7 38 38 H 1.08999 * 110.37049 * 37.06767 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3781 1.1121 0.0000 4 7 3.5890 0.6355 0.0006 5 8 3.5995 -0.5733 0.0060 6 6 2.3509 -1.0770 0.0006 7 6 1.9696 -2.5020 0.0017 8 8 0.7953 -2.8171 0.0071 9 7 2.9230 -3.4546 0.0022 10 6 4.3736 -3.2151 -0.0035 11 6 5.0656 -4.5943 -0.0268 12 6 3.9664 -5.5249 -0.6041 13 1 3.9431 -5.4734 -1.6926 14 7 4.1553 -6.9050 -0.1505 15 6 4.1314 -7.2152 1.2812 16 6 4.3543 -7.9050 -1.0645 17 1 4.7413 -7.6710 -2.0452 18 6 4.0584 -9.2195 -0.7306 19 7 3.3434 -9.4808 0.3432 20 14 4.6752 -10.6176 -1.8050 21 1 6.1590 -10.5855 -1.8556 22 1 4.2278 -11.9140 -1.2355 23 1 4.1297 -10.4647 -3.1776 24 6 2.6841 -4.9093 0.0149 25 1 -0.3634 0.0008 1.0277 26 1 -0.3634 0.8895 -0.5146 27 1 -0.3633 -0.8904 -0.5131 28 1 2.0946 2.1542 -0.0010 29 1 4.6519 -2.6457 -0.8902 30 1 4.6625 -2.6680 0.8940 31 1 5.9382 -4.5770 -0.6797 32 1 5.3455 -4.9024 0.9806 33 1 3.1296 -7.5363 1.5667 34 1 4.8428 -8.0139 1.4917 35 1 4.4040 -6.3264 1.8501 36 1 3.1370 -10.3994 0.5767 37 1 2.5464 -5.2621 1.0371 38 1 1.8137 -5.1562 -0.5930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972658846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:28:27 Heat of formation + Delta-G solvation = 60.551010 kcal Electronic energy + Delta-G solvation = -21980.198159 eV Core-core repulsion = 18634.353684 eV Total energy + Delta-G solvation = -3345.844475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.14008 -39.80725 -37.61654 -35.11333 -34.66377 -32.58153 -31.58997 -29.89652 -28.71248 -27.74399 -26.09702 -24.66236 -23.22738 -22.33328 -21.91334 -20.04780 -19.38007 -17.92241 -17.74440 -17.07141 -16.05663 -15.88892 -15.53062 -14.73709 -14.38138 -14.05037 -13.51604 -13.48025 -13.33649 -13.18933 -12.96481 -12.67348 -12.49929 -12.43110 -12.00677 -11.52190 -11.41635 -10.93418 -10.82249 -10.56250 -10.54049 -10.52879 -10.32213 -10.17635 -9.90794 -9.86024 -9.59938 -8.63674 -8.45896 -6.84606 -5.79737 -3.27946 0.70903 1.89821 2.52926 3.01568 3.15708 3.36368 3.42153 3.42858 3.98799 4.35583 4.43789 4.54317 4.87352 4.95695 5.07831 5.24948 5.30602 5.44669 5.49972 5.52564 5.56672 5.67162 5.76694 5.87108 5.97402 6.04550 6.23809 6.32695 6.40454 6.55000 6.72195 6.82468 7.28892 7.51473 7.66161 7.74763 7.82268 8.07403 8.31686 9.14781 9.76934 10.25599 11.24468 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.037664 B = 0.003807 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.227322 B = 7352.843753 C = 7685.975732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.128 4.128 3 C -0.016 4.016 4 N -0.349 5.349 5 O 0.118 5.882 6 C -0.079 4.079 7 C 0.611 3.389 8 O -0.517 6.517 9 N -0.598 5.598 10 C 0.100 3.900 11 C -0.152 4.152 12 C 0.173 3.827 13 H 0.081 0.919 14 N -0.583 5.583 15 C 0.157 3.843 16 C -0.264 4.264 17 H 0.070 0.930 18 C 0.007 3.993 19 N -0.903 5.903 20 Si 0.907 3.093 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.087 3.913 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.090 0.910 28 H 0.197 0.803 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.043 0.957 35 H 0.003 0.997 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.107 18.021 0.485 18.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.133 4.133 3 C -0.194 4.194 4 N -0.049 5.049 5 O 0.046 5.954 6 C -0.144 4.144 7 C 0.396 3.604 8 O -0.394 6.394 9 N -0.330 5.330 10 C -0.023 4.023 11 C -0.193 4.193 12 C 0.062 3.938 13 H 0.099 0.901 14 N -0.303 5.303 15 C 0.013 3.987 16 C -0.394 4.394 17 H 0.088 0.912 18 C -0.192 4.192 19 N -0.547 5.547 20 Si 0.737 3.263 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.208 1.208 24 C -0.036 4.036 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.109 0.891 28 H 0.214 0.786 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.618 18.225 0.574 18.245 hybrid contribution -0.428 -0.700 -0.428 0.925 sum -1.046 17.526 0.146 17.557 Atomic orbital electron populations 1.20311 0.86383 1.04088 1.03391 1.21627 0.99044 0.90268 1.02386 1.24969 0.87848 1.01975 1.04583 1.73751 1.23136 0.91580 1.16394 1.85034 1.28275 1.15245 1.66884 1.24148 0.84417 0.96342 1.09541 1.16131 0.84965 0.80939 0.78399 1.90841 1.16713 1.80287 1.51559 1.48437 1.06847 1.07757 1.69977 1.22190 0.79243 0.99204 1.01707 1.23240 0.99776 0.93068 1.03175 1.21526 0.89603 0.85288 0.97361 0.90117 1.43852 1.82395 1.01152 1.02916 1.20833 1.00566 0.95003 0.82290 1.19171 1.37345 0.86352 0.96496 0.91193 1.25061 0.98063 0.98132 0.97967 1.70061 1.38853 1.18828 1.26913 0.86301 0.78660 0.81476 0.79870 1.20968 1.21603 1.20821 1.23296 1.01957 0.75876 1.02494 0.90256 0.90905 0.89088 0.78628 0.91214 0.91426 0.90292 0.90364 0.94790 0.93861 0.97854 0.93511 0.90730 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.95 36.00 0.36 -0.46 16 2 C -0.13 -1.49 6.37 -103.99 -0.66 -2.15 16 3 C -0.02 -0.17 12.14 -17.12 -0.21 -0.37 16 4 N -0.35 -4.40 12.04 30.46 0.37 -4.03 16 5 O 0.12 1.56 9.02 15.54 0.14 1.70 16 6 C -0.08 -1.08 7.08 -36.32 -0.26 -1.34 16 7 C 0.61 9.83 7.85 -12.48 -0.10 9.73 16 8 O -0.52 -9.50 15.37 5.29 0.08 -9.41 16 9 N -0.60 -9.55 3.32 -171.62 -0.57 -10.12 16 10 C 0.10 1.36 5.58 -3.06 -0.02 1.34 16 11 C -0.15 -2.34 6.49 -24.89 -0.16 -2.50 16 12 C 0.17 3.31 3.55 -65.66 -0.23 3.07 16 13 H 0.08 1.56 7.96 -51.93 -0.41 1.14 16 14 N -0.58 -13.75 2.96 -170.89 -0.51 -14.26 16 15 C 0.16 3.66 7.56 59.85 0.45 4.11 16 16 C -0.26 -6.94 9.60 -15.06 -0.14 -7.08 16 17 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 18 C 0.01 0.19 5.08 -17.43 -0.09 0.10 16 19 N -0.90 -25.52 10.77 55.49 0.60 -24.92 16 20 Si 0.91 21.21 29.58 -169.99 -5.03 16.18 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.09 1.61 6.46 -2.41 -0.02 1.59 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 1.05 6.74 -51.93 -0.35 0.70 16 28 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 30 H 0.07 0.84 7.81 -51.93 -0.41 0.44 16 31 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.08 1.25 6.47 -51.93 -0.34 0.91 16 33 H 0.03 0.87 7.33 -51.93 -0.38 0.48 16 34 H 0.04 1.08 7.38 -51.92 -0.38 0.70 16 35 H 0.00 0.06 6.37 -51.93 -0.33 -0.27 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.07 1.45 6.96 -51.92 -0.36 1.09 16 38 H 0.08 1.55 8.03 -51.93 -0.42 1.13 16 LS Contribution 313.55 15.07 4.73 4.73 Total: -1.00 -29.81 313.55 -6.29 -36.10 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -5.02 Total: -2.00 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.07 Total: 6.04 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: -0.11 Total: -53.33 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.22 Total: -7.71 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.81 -6.29 -36.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972658846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.648 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds