Wall clock time and date at job start Tue Mar 31 2020 02:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35319 * 128.03759 * 2 1 4 4 O 1.34012 * 106.67063 * 180.02562 * 3 2 1 5 5 N 1.20905 * 111.84251 * 359.70811 * 4 3 2 6 6 C 1.30987 * 111.44422 * 0.48650 * 5 4 3 7 7 C 1.48323 * 126.94193 * 179.79266 * 6 5 4 8 8 O 1.21498 * 119.99940 * 179.68589 * 7 6 5 9 9 N 1.34778 * 119.99934 * 359.68785 * 7 6 5 10 10 C 1.47419 * 125.64757 * 359.97438 * 9 7 6 11 11 C 1.54920 * 104.83230 * 155.90824 * 10 9 7 12 12 C 1.55160 * 101.57696 * 37.00683 * 11 10 9 13 13 H 1.08999 * 110.71646 * 83.04263 * 12 11 10 14 14 N 1.46500 * 110.71564 * 206.13237 * 12 11 10 15 15 C 1.46496 * 119.99923 * 57.56505 * 14 12 11 16 16 C 1.36941 * 120.00068 * 237.56063 * 14 12 11 17 17 H 1.08000 * 120.00059 * 336.20696 * 16 14 12 18 18 C 1.38814 * 119.99866 * 156.20280 * 16 14 12 19 19 N 1.31617 * 119.99844 * 330.81093 * 18 16 14 20 20 Si 1.86801 * 119.99775 * 150.81031 * 18 16 14 21 21 H 1.48500 * 109.47107 * 179.97438 * 20 18 16 22 22 H 1.48500 * 109.47008 * 300.00146 * 20 18 16 23 23 H 1.48495 * 109.47122 * 59.99901 * 20 18 16 24 24 C 1.47328 * 125.61394 * 180.19647 * 9 7 6 25 25 H 1.09006 * 109.46606 * 269.96873 * 1 2 3 26 26 H 1.08994 * 109.47492 * 29.96649 * 1 2 3 27 27 H 1.08999 * 109.46713 * 149.97170 * 1 2 3 28 28 H 1.08002 * 126.66448 * 0.05189 * 3 2 1 29 29 H 1.08997 * 110.37242 * 37.07068 * 10 9 7 30 30 H 1.09005 * 110.36597 * 274.74274 * 10 9 7 31 31 H 1.08998 * 111.00208 * 278.93831 * 11 10 9 32 32 H 1.08997 * 111.03537 * 155.09203 * 11 10 9 33 33 H 1.09001 * 109.47066 * 272.87737 * 15 14 12 34 34 H 1.09000 * 109.47494 * 32.87932 * 15 14 12 35 35 H 1.08998 * 109.47352 * 152.88285 * 15 14 12 36 36 H 0.96990 * 120.00335 * 353.70278 * 19 18 16 37 37 H 1.08995 * 110.05821 * 61.68199 * 24 9 7 38 38 H 1.09001 * 109.85231 * 300.42134 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5775 -0.0006 5 7 3.5989 -0.6315 0.0048 6 6 2.3837 -1.1205 -0.0007 7 6 1.9993 -2.5531 -0.0011 8 8 0.8256 -2.8671 -0.0008 9 7 2.9520 -3.5064 -0.0017 10 6 4.4067 -3.2674 -0.0027 11 6 5.0201 -4.5521 0.6082 12 6 4.0917 -5.6490 0.0232 13 1 4.4068 -5.9245 -0.9832 14 7 4.0653 -6.8252 0.8961 15 6 3.6540 -6.6896 2.2956 16 6 4.4249 -8.0515 0.4039 17 1 4.3562 -8.2494 -0.6556 18 6 4.8780 -9.0400 1.2667 19 7 5.5001 -8.7087 2.3783 20 14 4.6048 -10.8403 0.8501 21 1 5.1789 -11.6896 1.9245 22 1 3.1485 -11.1059 0.7334 23 1 5.2705 -11.1566 -0.4390 24 6 2.7113 -4.9599 -0.0063 25 1 -0.3633 -0.0006 1.0277 26 1 -0.3634 0.8902 -0.5133 27 1 -0.3633 -0.8897 -0.5143 28 1 2.0559 2.1075 0.0008 29 1 4.6493 -2.4014 0.6132 30 1 4.7667 -3.1224 -1.0213 31 1 4.9641 -4.5325 1.6965 32 1 6.0483 -4.6917 0.2743 33 1 4.5190 -6.4276 2.9048 34 1 2.9004 -5.9065 2.3787 35 1 3.2365 -7.6340 2.6448 36 1 5.7231 -7.7807 2.5512 37 1 2.1729 -5.2468 -0.9096 38 1 2.1368 -5.2427 0.8758 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972682451.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:44:12 Heat of formation + Delta-G solvation = 40.806064 kcal Electronic energy + Delta-G solvation = -22004.150518 eV Core-core repulsion = 18657.449839 eV Total energy + Delta-G solvation = -3346.700680 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.17731 -41.24377 -39.18956 -36.94139 -35.73305 -33.94748 -33.08325 -31.43231 -29.70718 -29.08515 -28.24970 -26.37986 -24.47132 -23.75438 -22.64743 -21.29630 -20.87423 -19.58740 -18.89625 -18.84423 -17.93692 -17.50518 -16.70527 -16.16174 -15.98542 -15.45770 -15.32809 -14.93717 -14.83149 -14.29625 -14.28484 -14.07051 -13.89895 -13.68454 -13.28388 -13.11936 -12.76250 -12.65986 -12.53263 -12.44893 -12.30337 -11.90734 -11.82781 -11.50511 -11.44799 -11.37234 -10.49284 -10.41890 -9.92398 -9.07937 -8.30355 -5.42633 0.01963 0.69531 1.52630 1.59725 1.66047 1.85188 1.91096 2.26069 2.62735 2.74731 3.13443 3.34945 3.40508 3.63084 3.74074 3.87241 4.05686 4.07004 4.13650 4.22990 4.35725 4.44325 4.57943 4.68801 4.75426 4.78992 4.80661 4.81424 4.91892 4.97977 5.04700 5.06795 5.19687 5.31469 5.79462 6.17903 6.34319 6.67714 6.96768 7.04997 7.70614 8.09623 8.95602 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.039997 B = 0.003803 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.889096 B = 7360.124420 C = 7720.044757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.174 4.174 3 C -0.031 4.031 4 O 0.134 5.866 5 N -0.344 5.344 6 C -0.055 4.055 7 C 0.600 3.400 8 O -0.558 6.558 9 N -0.602 5.602 10 C 0.113 3.887 11 C -0.142 4.142 12 C 0.168 3.832 13 H 0.082 0.918 14 N -0.603 5.603 15 C 0.148 3.852 16 C -0.371 4.371 17 H 0.058 0.942 18 C -0.065 4.065 19 N -0.935 5.935 20 Si 1.110 2.890 21 H -0.292 1.292 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.101 3.899 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.056 0.944 28 H 0.280 0.720 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.002 0.998 34 H 0.037 0.963 35 H 0.027 0.973 36 H 0.257 0.743 37 H 0.066 0.934 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.707 22.472 -5.626 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.179 4.179 3 C -0.111 4.111 4 O 0.056 5.944 5 N -0.043 5.043 6 C -0.212 4.212 7 C 0.388 3.612 8 O -0.436 6.436 9 N -0.335 5.335 10 C -0.009 4.009 11 C -0.182 4.182 12 C 0.060 3.940 13 H 0.100 0.900 14 N -0.325 5.325 15 C 0.002 3.998 16 C -0.500 4.500 17 H 0.076 0.924 18 C -0.263 4.263 19 N -0.576 5.576 20 Si 0.935 3.065 21 H -0.219 1.219 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.023 4.023 25 H 0.096 0.904 26 H 0.126 0.874 27 H 0.075 0.925 28 H 0.296 0.704 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.995 20.110 -5.060 21.330 hybrid contribution -0.824 1.285 -0.314 1.558 sum -5.819 21.395 -5.374 22.814 Atomic orbital electron populations 1.20219 0.85763 1.04088 1.03425 1.21687 1.00006 0.89859 1.06368 1.26698 0.80280 1.02606 1.01518 1.84757 1.30860 1.14380 1.64412 1.74270 1.21239 0.92561 1.16210 1.23274 0.91044 0.95990 1.10864 1.16962 0.84280 0.83125 0.76871 1.90738 1.18132 1.82306 1.52413 1.48479 1.07957 1.06373 1.70651 1.22494 0.77699 0.98548 1.02147 1.23241 1.00414 0.94099 1.00459 1.21453 0.91287 0.86310 0.94982 0.89994 1.44039 1.76506 1.04365 1.07584 1.20742 0.95676 0.98245 0.85098 1.20206 1.43749 0.90907 0.95092 0.92411 1.27074 0.95180 1.08092 0.95989 1.70898 1.36412 1.20272 1.29980 0.82928 0.76599 0.71385 0.75616 1.21851 1.20960 1.19898 1.22504 0.99980 0.78427 1.01385 0.90413 0.87399 0.92498 0.70446 0.88895 0.89776 0.92227 0.89292 0.98016 0.94459 0.95376 0.93250 0.91604 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 10.01 71.24 0.71 -0.58 16 2 C -0.17 -3.39 6.34 -19.53 -0.12 -3.51 16 3 C -0.03 -0.34 12.24 67.15 0.82 0.48 16 4 O 0.13 2.34 11.18 71.92 0.80 3.15 16 5 N -0.34 -8.51 9.30 -49.51 -0.46 -8.97 16 6 C -0.05 -1.52 7.02 42.96 0.30 -1.22 16 7 C 0.60 20.92 7.88 86.93 0.68 21.60 16 8 O -0.56 -22.11 15.67 -3.71 -0.06 -22.17 16 9 N -0.60 -20.88 3.33 -813.88 -2.71 -23.59 16 10 C 0.11 3.42 6.18 86.86 0.54 3.96 16 11 C -0.14 -4.98 6.65 31.99 0.21 -4.77 16 12 C 0.17 6.87 3.43 46.18 0.16 7.03 16 13 H 0.08 3.33 7.93 -2.39 -0.02 3.31 16 14 N -0.60 -30.08 2.81 -696.17 -1.95 -32.04 16 15 C 0.15 7.23 7.80 127.77 1.00 8.23 16 16 C -0.37 -20.50 9.41 84.03 0.79 -19.71 16 17 H 0.06 3.17 7.97 -2.91 -0.02 3.15 16 18 C -0.07 -3.69 4.62 84.86 0.39 -3.30 16 19 N -0.93 -56.42 12.71 21.65 0.28 -56.14 16 20 Si 1.11 50.68 30.01 68.60 2.06 52.74 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 C 0.10 3.91 6.47 86.67 0.56 4.47 16 25 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 26 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 1.31 6.89 -2.39 -0.02 1.30 16 28 H 0.28 -0.46 8.06 -2.91 -0.02 -0.48 16 29 H 0.09 2.67 6.23 -2.39 -0.01 2.66 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.06 2.26 7.12 -2.39 -0.02 2.25 16 32 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.00 0.09 6.69 -2.39 -0.02 0.08 16 34 H 0.04 1.64 6.23 -2.39 -0.01 1.63 16 35 H 0.03 1.48 7.27 -2.39 -0.02 1.47 16 36 H 0.26 15.75 6.38 -92.72 -0.59 15.16 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.06 2.40 6.08 -2.39 -0.01 2.39 16 Total: -1.00 -72.26 311.94 5.25 -67.01 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: 1.26 Total: 7.35 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 6.05 Total: 12.67 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -4.85 Total: -120.74 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: 0.75 Total: -19.03 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.06 Total: 52.74 kcal Total: -72.26 5.25 -67.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972682451.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.813 kcal (2) G-P(sol) polarization free energy of solvation -72.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds