Wall clock time and date at job start Tue Mar 31 2020 02:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 110.78087 * 2 1 4 4 C 1.54321 * 110.72261 * 236.75411 * 2 1 3 5 5 N 1.47022 * 107.27464 * 219.44672 * 4 2 1 6 6 C 1.36930 * 125.64832 * 178.98771 * 5 4 2 7 7 H 1.08000 * 120.00224 * 349.94147 * 6 5 4 8 8 C 1.38813 * 119.99976 * 169.94455 * 6 5 4 9 9 N 1.31616 * 120.00301 * 350.41820 * 8 6 5 10 10 Si 1.86808 * 120.00136 * 170.41892 * 8 6 5 11 11 H 1.48501 * 109.46764 * 94.13813 * 10 8 6 12 12 H 1.48490 * 109.47227 * 214.13838 * 10 8 6 13 13 H 1.48500 * 109.46959 * 334.13889 * 10 8 6 14 14 C 1.47421 * 108.70270 * 358.94088 * 5 4 2 15 15 C 1.54907 * 104.83176 * 24.12811 * 14 5 4 16 16 H 1.09008 * 111.03825 * 204.89822 * 15 14 5 17 17 N 1.46504 * 111.00590 * 81.06684 * 15 14 5 18 18 C 1.34770 * 120.00088 * 92.52532 * 17 15 14 19 19 O 1.21498 * 120.00443 * 0.28038 * 18 17 15 20 20 C 1.48335 * 119.99874 * 180.27847 * 18 17 15 21 21 C 1.42276 * 126.93681 * 180.02562 * 20 18 17 22 22 C 1.35315 * 103.92066 * 179.97438 * 21 20 18 23 23 O 1.34015 * 106.66627 * 359.97438 * 22 21 20 24 24 N 1.20900 * 111.84796 * 359.70610 * 23 22 21 25 25 H 1.08999 * 109.47091 * 296.76659 * 1 2 3 26 26 H 1.09004 * 109.47035 * 56.76270 * 1 2 3 27 27 H 1.08996 * 109.47624 * 176.76328 * 1 2 3 28 28 H 1.09002 * 109.47015 * 183.24089 * 3 2 1 29 29 H 1.09007 * 109.47057 * 303.23340 * 3 2 1 30 30 H 1.08993 * 109.47697 * 63.23662 * 3 2 1 31 31 H 1.09003 * 109.88359 * 338.86732 * 4 2 1 32 32 H 1.09002 * 109.87928 * 100.02729 * 4 2 1 33 33 H 0.96993 * 120.00450 * 180.02562 * 9 8 6 34 34 H 1.08996 * 110.36879 * 265.29239 * 14 5 4 35 35 H 1.09000 * 110.37097 * 142.96692 * 14 5 4 36 36 H 0.97002 * 119.99587 * 272.80494 * 17 15 14 37 37 H 1.08001 * 128.03890 * 0.02562 * 21 20 18 38 38 H 1.07997 * 126.66784 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0760 -0.7913 -1.2071 5 7 3.2445 -1.5509 -0.7388 6 6 4.0043 -2.3969 -1.5015 7 1 3.6724 -2.6778 -2.4901 8 6 5.2012 -2.8938 -1.0040 9 7 5.7002 -2.4109 0.1141 10 14 6.1038 -4.2478 -1.9215 11 1 7.1177 -3.6439 -2.8230 12 1 6.7783 -5.1418 -0.9464 13 1 5.1329 -5.0338 -2.7244 14 6 3.4632 -1.2498 0.6877 15 6 2.0789 -0.7954 1.2139 16 1 2.1843 -0.1519 2.0874 17 7 1.2270 -1.9487 1.5146 18 6 1.2066 -2.4650 2.7593 19 8 1.8908 -1.9710 3.6334 20 6 0.3487 -3.6366 3.0623 21 6 0.2136 -4.2961 4.3157 22 6 -0.6743 -5.2867 4.0684 23 8 -1.0103 -5.1876 2.7748 24 7 -0.4429 -4.2684 2.2318 25 1 -0.3633 0.4628 0.9175 26 1 -0.3633 0.5633 -0.8596 27 1 -0.3634 -1.0259 -0.0580 28 1 3.1610 1.4061 -0.0581 29 1 1.6751 1.9700 -0.8596 30 1 1.7691 1.9344 0.9175 31 1 1.3129 -1.4759 -1.5775 32 1 2.3741 -0.1025 -1.9976 33 1 6.5367 -2.7578 0.4615 34 1 4.1930 -0.4479 0.7986 35 1 3.7959 -2.1426 1.2172 36 1 0.6807 -2.3432 0.8169 37 1 0.7050 -4.0603 5.2481 38 1 -1.0416 -6.0151 4.7761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972825884.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:07 Heat of formation + Delta-G solvation = 30.556283 kcal Electronic energy + Delta-G solvation = -22508.744645 eV Core-core repulsion = 19161.599501 eV Total energy + Delta-G solvation = -3347.145144 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.12555 -41.30395 -39.52112 -35.74685 -35.10549 -34.54363 -32.76541 -32.68739 -29.99446 -28.16888 -27.51235 -26.18905 -24.67577 -23.95320 -22.39604 -21.44188 -20.38312 -19.29644 -18.80122 -18.72170 -17.93025 -17.45953 -16.70315 -16.00917 -15.86759 -15.52123 -15.41890 -14.90622 -14.72515 -14.30005 -14.18306 -13.79771 -13.68272 -13.23207 -13.06528 -12.84835 -12.73592 -12.66401 -12.65316 -12.14561 -11.88608 -11.86652 -11.63886 -11.51120 -11.45784 -11.37709 -10.73694 -10.71677 -10.15121 -8.87723 -7.91094 -5.26051 0.10212 0.80500 1.40479 1.42465 1.51764 1.82825 2.08050 2.36096 2.45119 2.90772 3.28339 3.47088 3.61064 3.70893 3.89681 4.01007 4.03396 4.26420 4.33945 4.41575 4.61817 4.70031 4.79068 4.82708 4.87424 4.96366 4.99670 5.05046 5.13333 5.20910 5.27784 5.42322 5.47990 5.57007 5.62915 6.14991 6.31430 6.93097 7.02653 7.10668 7.72204 8.38627 9.20209 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.013636 B = 0.006599 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.924757 B = 4241.826091 C = 5427.691083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 C -0.125 4.125 4 C 0.137 3.863 5 N -0.617 5.617 6 C -0.240 4.240 7 H 0.082 0.918 8 C -0.066 4.066 9 N -0.949 5.949 10 Si 0.975 3.025 11 H -0.283 1.283 12 H -0.297 1.297 13 H -0.268 1.268 14 C 0.182 3.818 15 C 0.131 3.869 16 H 0.093 0.907 17 N -0.681 5.681 18 C 0.589 3.411 19 O -0.564 6.564 20 C -0.058 4.058 21 C -0.205 4.205 22 C -0.024 4.024 23 O 0.132 5.868 24 N -0.352 5.352 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.246 0.754 34 H 0.006 0.994 35 H 0.024 0.976 36 H 0.408 0.592 37 H 0.190 0.810 38 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.087 -1.531 6.576 18.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.073 4.073 3 C -0.183 4.183 4 C 0.012 3.988 5 N -0.343 5.343 6 C -0.369 4.369 7 H 0.100 0.900 8 C -0.259 4.259 9 N -0.597 5.597 10 Si 0.803 3.197 11 H -0.210 1.210 12 H -0.224 1.224 13 H -0.192 1.192 14 C 0.055 3.945 15 C 0.025 3.975 16 H 0.111 0.889 17 N -0.331 5.331 18 C 0.374 3.626 19 O -0.442 6.442 20 C -0.215 4.215 21 C -0.228 4.228 22 C -0.104 4.104 23 O 0.053 5.947 24 N -0.051 5.051 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.024 0.976 35 H 0.043 0.957 36 H 0.245 0.755 37 H 0.208 0.792 38 H 0.299 0.701 Dipole moment (debyes) X Y Z Total from point charges -16.666 -1.019 5.839 17.688 hybrid contribution 1.499 -0.773 0.127 1.692 sum -15.167 -1.792 5.966 16.396 Atomic orbital electron populations 1.21679 0.91270 1.01945 1.03229 1.21835 0.97295 0.95722 0.92473 1.21689 1.00160 0.93153 1.03278 1.21659 0.88860 0.93052 0.95216 1.44660 1.31916 1.50917 1.06832 1.19387 0.99909 1.18879 0.98738 0.90041 1.25671 0.98151 1.02989 0.99095 1.70167 1.20722 1.45041 1.23791 0.85120 0.78450 0.78851 0.77268 1.20994 1.22401 1.19222 1.21407 0.91518 0.96832 0.84715 1.22405 0.90759 0.86489 0.97826 0.88949 1.45653 1.44734 1.32281 1.10387 1.17306 0.80704 0.81719 0.82846 1.90745 1.44041 1.61816 1.47566 1.23580 1.02369 1.01205 0.94378 1.23066 1.03169 0.97625 0.98917 1.27003 0.97243 1.01076 0.85110 1.84753 1.50352 1.36646 1.22915 1.74196 1.08703 1.00140 1.22016 0.91479 0.90028 0.93091 0.94544 0.89993 0.90919 0.95009 0.95337 0.94497 0.97617 0.95743 0.75501 0.79250 0.70104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 8.07 71.98 0.58 -2.50 16 2 C -0.07 -2.38 0.80 -51.00 -0.04 -2.42 16 3 C -0.13 -3.67 8.40 71.98 0.60 -3.07 16 4 C 0.14 5.55 6.41 86.73 0.56 6.10 16 5 N -0.62 -32.22 3.39 -692.01 -2.35 -34.57 16 6 C -0.24 -13.78 10.24 84.03 0.86 -12.92 16 7 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 8 C -0.07 -3.88 5.40 84.86 0.46 -3.42 16 9 N -0.95 -59.83 10.68 21.65 0.23 -59.60 16 10 Si 0.97 47.36 29.56 68.60 2.03 49.39 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 C 0.18 9.51 4.80 86.86 0.42 9.93 16 15 C 0.13 5.26 2.66 46.38 0.12 5.38 16 16 H 0.09 3.73 7.44 -2.38 -0.02 3.71 16 17 N -0.68 -25.92 4.54 -438.34 -1.99 -27.91 16 18 C 0.59 23.07 7.85 86.93 0.68 23.76 16 19 O -0.56 -25.30 16.59 -3.71 -0.06 -25.36 16 20 C -0.06 -1.84 7.19 42.96 0.31 -1.53 16 21 C -0.20 -4.60 10.99 22.60 0.25 -4.35 16 22 C -0.02 -0.33 12.28 67.14 0.82 0.49 16 23 O 0.13 2.78 11.18 71.90 0.80 3.58 16 24 N -0.35 -10.22 11.84 -49.52 -0.59 -10.81 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.05 1.30 6.48 -2.39 -0.02 1.29 16 28 H 0.04 1.28 7.57 -2.39 -0.02 1.26 16 29 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.03 1.24 7.77 -2.39 -0.02 1.22 16 32 H 0.03 1.15 7.84 -2.39 -0.02 1.14 16 33 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 34 H 0.01 0.34 7.73 -2.39 -0.02 0.32 16 35 H 0.02 1.49 6.94 -2.39 -0.02 1.48 16 36 H 0.41 14.68 6.94 -92.71 -0.64 14.04 16 37 H 0.19 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.28 0.09 8.06 -2.91 -0.02 0.07 16 Total: -1.00 -78.16 317.78 4.13 -74.03 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.44 Total: 15.79 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 5.62 Total: 15.46 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -4.70 Total: -132.89 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.74 Total: -21.78 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -78.16 4.13 -74.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972825884.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.586 kcal (2) G-P(sol) polarization free energy of solvation -78.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds