Wall clock time and date at job start Tue Mar 31 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 110.91710 * 2 1 4 4 C 1.54912 * 111.00325 * 123.90081 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47311 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47271 * 120.00121 * 10 8 6 13 13 H 1.48501 * 109.46665 * 239.99715 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21612 * 120.00061 * 0.02562 * 18 17 15 20 20 C 1.47425 * 119.99752 * 180.02562 * 18 17 15 21 21 C 1.36087 * 126.44722 * 180.02562 * 20 18 17 22 22 O 1.34253 * 106.95319 * 179.97438 * 21 20 18 23 23 C 1.34054 * 108.22522 * 359.97438 * 22 21 20 24 24 N 1.29944 * 109.24079 * 359.74684 * 23 22 21 25 25 H 1.08994 * 109.46864 * 297.54903 * 1 2 3 26 26 H 1.09000 * 109.46578 * 57.55451 * 1 2 3 27 27 H 1.08996 * 109.46833 * 177.55092 * 1 2 3 28 28 H 1.09002 * 109.46921 * 182.44444 * 3 2 1 29 29 H 1.09003 * 109.47131 * 302.44965 * 3 2 1 30 30 H 1.09001 * 109.47089 * 62.44523 * 3 2 1 31 31 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 32 32 H 1.08997 * 110.36790 * 199.90563 * 4 2 1 33 33 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 35 35 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 36 36 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 37 37 H 1.08003 * 126.52740 * 0.02562 * 21 20 18 38 38 H 1.07998 * 125.38214 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0853 -0.8066 1.2004 5 7 2.0139 -2.2159 0.7734 6 6 1.9504 -3.3002 1.6073 7 1 1.9505 -3.1587 2.6781 8 6 1.8872 -4.5813 1.0765 9 7 1.8877 -4.7537 -0.2283 10 14 1.7999 -6.0604 2.2141 11 1 1.8133 -5.6004 3.6260 12 1 0.5480 -6.8144 1.9505 13 1 2.9695 -6.9422 1.9700 14 6 2.0286 -2.2647 -0.6960 15 6 2.0862 -0.8080 -1.2022 16 1 1.4542 -0.6768 -2.0805 17 7 3.4668 -0.4157 -1.4961 18 6 3.9655 -0.5842 -2.7368 19 8 3.2695 -1.0614 -3.6124 20 6 5.3550 -0.1899 -3.0324 21 6 5.9890 -0.3003 -4.2315 22 8 7.2339 0.1723 -4.0611 23 6 7.3623 0.5651 -2.7858 24 7 6.2426 0.3591 -2.1595 25 1 -0.3633 0.4753 0.9111 26 1 -0.3632 0.5514 -0.8673 27 1 -0.3633 -1.0267 -0.0439 28 1 3.1651 1.4019 -0.0438 29 1 1.6909 1.9654 -0.8672 30 1 1.7619 1.9382 0.9111 31 1 1.4671 -0.6461 2.0837 32 1 3.1182 -0.5233 1.4025 33 1 1.8431 -5.6489 -0.5992 34 1 2.9064 -2.8117 -1.0399 35 1 1.1219 -2.7480 -1.0598 36 1 4.0218 -0.0346 -0.7978 37 1 5.5701 -0.6926 -5.1465 38 1 8.2540 0.9901 -2.3491 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972859783.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:31 Heat of formation + Delta-G solvation = -10.517849 kcal Electronic energy + Delta-G solvation = -22372.855974 eV Core-core repulsion = 19023.929723 eV Total energy + Delta-G solvation = -3348.926252 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.36393 -41.19320 -39.40702 -35.91460 -35.65713 -34.42485 -32.61947 -31.44268 -29.83528 -28.10292 -27.44884 -25.85427 -24.47165 -23.58133 -22.23267 -21.49287 -20.35988 -19.27061 -18.69673 -17.69425 -17.56592 -17.33787 -16.66531 -16.02992 -15.81308 -15.64180 -15.42452 -15.14630 -14.76367 -14.58096 -14.01910 -13.78797 -13.46733 -13.17186 -12.99445 -12.86348 -12.72394 -12.59066 -12.40627 -12.07382 -11.87990 -11.85821 -11.76679 -11.54911 -11.33973 -11.28258 -10.76432 -10.27163 -9.96101 -8.90022 -7.84152 -5.20817 0.12226 1.10537 1.43666 1.45082 1.55548 1.73690 2.13755 2.29234 2.48704 3.12679 3.34292 3.48075 3.70522 3.85189 3.90551 3.95264 4.06171 4.38314 4.49911 4.53665 4.63188 4.69464 4.83925 4.87075 4.94176 5.02902 5.11433 5.16272 5.20686 5.27248 5.32964 5.45338 5.55169 5.67988 5.71704 6.16833 6.33836 6.63180 7.06955 7.12848 7.76723 8.41556 9.25678 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017011 B = 0.005489 C = 0.004694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.554902 B = 5100.208319 C = 5963.128900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.235 4.235 7 H 0.088 0.912 8 C -0.071 4.071 9 N -0.955 5.955 10 Si 0.979 3.021 11 H -0.261 1.261 12 H -0.293 1.293 13 H -0.296 1.296 14 C 0.194 3.806 15 C 0.134 3.866 16 H 0.085 0.915 17 N -0.684 5.684 18 C 0.591 3.409 19 O -0.577 6.577 20 C -0.103 4.103 21 C 0.029 3.971 22 O -0.195 6.195 23 C 0.201 3.799 24 N -0.501 5.501 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.025 0.975 33 H 0.244 0.756 34 H -0.002 1.002 35 H 0.012 0.988 36 H 0.411 0.589 37 H 0.250 0.750 38 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.895 16.211 -4.265 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.076 4.076 3 C -0.180 4.180 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.364 4.364 7 H 0.105 0.895 8 C -0.263 4.263 9 N -0.604 5.604 10 Si 0.807 3.193 11 H -0.185 1.185 12 H -0.220 1.220 13 H -0.224 1.224 14 C 0.067 3.933 15 C 0.028 3.972 16 H 0.103 0.897 17 N -0.334 5.334 18 C 0.378 3.622 19 O -0.457 6.457 20 C -0.221 4.221 21 C -0.045 4.045 22 O -0.080 6.080 23 C -0.028 4.028 24 N -0.230 5.230 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.053 0.947 34 H 0.016 0.984 35 H 0.030 0.970 36 H 0.249 0.751 37 H 0.265 0.735 38 H 0.321 0.679 Dipole moment (debyes) X Y Z Total from point charges 8.267 15.821 -4.204 18.339 hybrid contribution 0.209 -1.590 0.006 1.604 sum 8.475 14.231 -4.198 17.087 Atomic orbital electron populations 1.21580 0.92348 1.01128 1.02863 1.21992 0.96960 0.95634 0.92986 1.21635 1.00555 0.92682 1.03175 1.21885 0.97448 0.83400 0.95979 1.44686 1.86586 1.01557 1.01736 1.19529 1.42120 0.85005 0.89782 0.89470 1.25694 1.02927 1.00382 0.97343 1.70239 1.58578 1.20468 1.11119 0.84996 0.76496 0.79188 0.78586 1.18493 1.22027 1.22386 1.21090 0.97256 0.91169 0.83767 1.22208 0.82035 0.94908 0.98062 0.89694 1.45703 1.14211 1.62336 1.11156 1.17216 0.84830 0.77411 0.82708 1.90783 1.60488 1.46994 1.47452 1.21601 0.96301 1.10978 0.93262 1.25633 0.81458 0.96667 1.00763 1.84484 1.30332 1.60215 1.33006 1.29272 0.99537 0.96782 0.77224 1.70718 1.02017 1.16747 1.33551 0.90418 0.91175 0.94946 0.92639 0.91590 0.90171 0.92999 0.95748 0.94711 0.98392 0.97027 0.75139 0.73459 0.67918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.80 8.61 71.98 0.62 -3.18 16 2 C -0.07 -2.47 0.83 -50.79 -0.04 -2.52 16 3 C -0.12 -3.02 8.35 71.98 0.60 -2.42 16 4 C 0.14 5.51 6.12 86.86 0.53 6.04 16 5 N -0.62 -32.40 3.38 -691.96 -2.34 -34.74 16 6 C -0.24 -13.44 10.28 84.03 0.86 -12.58 16 7 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 8 C -0.07 -4.19 5.49 84.86 0.47 -3.72 16 9 N -0.95 -60.76 10.31 21.65 0.22 -60.54 16 10 Si 0.98 47.34 29.55 68.60 2.03 49.36 16 11 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 12 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 13 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 14 C 0.19 10.31 4.73 86.73 0.41 10.72 16 15 C 0.13 5.43 2.59 46.18 0.12 5.55 16 16 H 0.09 3.57 7.45 -2.38 -0.02 3.55 16 17 N -0.68 -25.40 4.41 -440.16 -1.94 -27.34 16 18 C 0.59 22.42 7.81 86.66 0.68 23.10 16 19 O -0.58 -25.35 16.53 -4.07 -0.07 -25.42 16 20 C -0.10 -3.08 6.99 40.41 0.28 -2.80 16 21 C 0.03 0.66 11.94 67.32 0.80 1.47 16 22 O -0.20 -3.44 10.73 0.38 0.00 -3.44 16 23 C 0.20 3.11 13.19 130.52 1.72 4.83 16 24 N -0.50 -12.75 11.06 -305.14 -3.37 -16.13 16 25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.03 1.24 7.81 -2.39 -0.02 1.22 16 28 H 0.05 1.36 6.27 -2.39 -0.01 1.35 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.05 1.98 8.05 -2.39 -0.02 1.96 16 32 H 0.02 0.96 8.04 -2.39 -0.02 0.94 16 33 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.00 -0.13 7.41 -2.39 -0.02 -0.15 16 35 H 0.01 0.71 7.38 -2.39 -0.02 0.69 16 36 H 0.41 14.06 6.78 -92.70 -0.63 13.43 16 37 H 0.25 4.32 8.06 -2.91 -0.02 4.30 16 38 H 0.31 0.81 8.06 -2.91 -0.02 0.79 16 Total: -1.00 -79.81 318.25 2.04 -77.77 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 0.45 Total: 15.96 kcal Atomic # 6 Polarization: 17.44 SS G_CDS: 7.06 Total: 24.49 kcal Atomic # 7 Polarization: -131.31 SS G_CDS: -7.43 Total: -138.74 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.06 Total: -28.85 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -79.81 2.04 -77.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972859783.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.254 kcal (2) G-P(sol) polarization free energy of solvation -79.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds