Wall clock time and date at job start Tue Mar 31 2020 02:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 110.91710 * 2 1 4 4 C 1.54912 * 111.00325 * 123.90081 * 2 1 3 5 5 N 1.47426 * 104.83261 * 81.06512 * 4 2 1 6 6 C 1.36941 * 125.64875 * 203.86480 * 5 4 2 7 7 H 1.08005 * 119.99780 * 359.97438 * 6 5 4 8 8 C 1.38813 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99926 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99719 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47311 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47271 * 120.00121 * 10 8 6 13 13 H 1.48501 * 109.46665 * 239.99715 * 10 8 6 14 14 C 1.47024 * 108.70449 * 24.12870 * 5 4 2 15 15 C 1.54327 * 107.26774 * 358.94057 * 14 5 4 16 16 H 1.09005 * 110.86995 * 219.37109 * 15 14 5 17 17 N 1.46500 * 110.71866 * 96.17335 * 15 14 5 18 18 C 1.34773 * 120.00063 * 91.47566 * 17 15 14 19 19 O 1.21687 * 120.00082 * 359.97438 * 18 17 15 20 20 C 1.46726 * 119.99735 * 179.97438 * 18 17 15 21 21 C 1.36342 * 126.64355 * 179.97438 * 20 18 17 22 22 N 1.33688 * 107.45304 * 179.97438 * 21 20 18 23 23 C 1.30616 * 108.99636 * 0.02562 * 22 21 20 24 24 O 1.33662 * 109.15274 * 359.75209 * 23 22 21 25 25 H 1.08994 * 109.46864 * 297.54903 * 1 2 3 26 26 H 1.09000 * 109.46578 * 57.55451 * 1 2 3 27 27 H 1.08996 * 109.46833 * 177.55092 * 1 2 3 28 28 H 1.09002 * 109.46921 * 182.44444 * 3 2 1 29 29 H 1.09003 * 109.47131 * 302.44965 * 3 2 1 30 30 H 1.09001 * 109.47089 * 62.44523 * 3 2 1 31 31 H 1.09002 * 110.36496 * 322.22928 * 4 2 1 32 32 H 1.08997 * 110.36790 * 199.90563 * 4 2 1 33 33 H 0.97001 * 119.99407 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.88316 * 118.35549 * 14 5 4 35 35 H 1.09002 * 109.88101 * 239.52444 * 14 5 4 36 36 H 0.97005 * 119.99678 * 271.47377 * 17 15 14 37 37 H 1.08007 * 126.27007 * 359.97438 * 21 20 18 38 38 H 1.07999 * 125.42215 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0763 1.4291 0.0000 4 6 2.0853 -0.8066 1.2004 5 7 2.0139 -2.2159 0.7734 6 6 1.9504 -3.3002 1.6073 7 1 1.9505 -3.1587 2.6781 8 6 1.8872 -4.5813 1.0765 9 7 1.8877 -4.7537 -0.2283 10 14 1.7999 -6.0604 2.2141 11 1 1.8133 -5.6004 3.6260 12 1 0.5480 -6.8144 1.9505 13 1 2.9695 -6.9422 1.9700 14 6 2.0286 -2.2647 -0.6960 15 6 2.0862 -0.8080 -1.2022 16 1 1.4542 -0.6768 -2.0805 17 7 3.4668 -0.4157 -1.4961 18 6 3.9655 -0.5842 -2.7368 19 8 3.2693 -1.0626 -3.6127 20 6 5.3480 -0.1907 -3.0313 21 6 5.9874 -0.3003 -4.2306 22 7 7.2280 0.1705 -4.0680 23 6 7.3760 0.5604 -2.8302 24 8 6.2340 0.3558 -2.1665 25 1 -0.3633 0.4753 0.9111 26 1 -0.3632 0.5514 -0.8673 27 1 -0.3633 -1.0267 -0.0439 28 1 3.1651 1.4019 -0.0438 29 1 1.6909 1.9654 -0.8672 30 1 1.7619 1.9382 0.9111 31 1 1.4671 -0.6461 2.0837 32 1 3.1182 -0.5233 1.4025 33 1 1.8431 -5.6489 -0.5992 34 1 2.9064 -2.8117 -1.0399 35 1 1.1219 -2.7480 -1.0598 36 1 4.0218 -0.0346 -0.7978 37 1 5.5682 -0.6950 -5.1444 38 1 8.2766 0.9841 -2.4109 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974869229.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:00:20 Heat of formation + Delta-G solvation = -6.994230 kcal Electronic energy + Delta-G solvation = -22425.087731 eV Core-core repulsion = 19076.314275 eV Total energy + Delta-G solvation = -3348.773456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.44391 -41.25766 -39.46068 -36.11114 -35.66303 -34.56096 -32.62124 -31.69943 -29.75833 -28.08790 -27.43943 -25.79676 -24.50158 -23.68580 -22.33505 -21.63434 -20.45047 -19.33563 -18.70345 -17.88937 -17.84304 -17.42474 -16.68623 -15.87033 -15.78025 -15.55741 -15.35481 -15.21667 -14.78529 -14.51435 -14.03425 -13.81183 -13.47067 -13.17384 -12.99616 -12.87135 -12.72817 -12.58811 -12.57635 -12.08367 -12.01710 -11.88906 -11.78165 -11.57049 -11.39105 -11.33169 -10.76766 -10.36234 -10.00506 -8.90075 -7.84739 -5.20997 -0.22560 1.37874 1.43642 1.44358 1.45160 1.55581 1.97718 2.15220 2.48634 3.26943 3.34353 3.45926 3.68634 3.77535 3.86694 3.93893 4.05266 4.37054 4.43988 4.48379 4.57850 4.67044 4.82916 4.87906 4.94148 5.00599 5.10424 5.16350 5.20795 5.23969 5.34002 5.45755 5.55027 5.64356 5.71293 6.16838 6.26255 6.53510 6.94668 7.08169 7.76886 8.40897 9.25090 Molecular weight = 279.14amu Principal moments of inertia in cm(-1) A = 0.017071 B = 0.005530 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.783730 B = 5061.743263 C = 5914.611145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.074 4.074 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.620 5.620 6 C -0.234 4.234 7 H 0.088 0.912 8 C -0.070 4.070 9 N -0.954 5.954 10 Si 0.976 3.024 11 H -0.261 1.261 12 H -0.294 1.294 13 H -0.297 1.297 14 C 0.191 3.809 15 C 0.134 3.866 16 H 0.088 0.912 17 N -0.686 5.686 18 C 0.603 3.397 19 O -0.556 6.556 20 C -0.124 4.124 21 C 0.051 3.949 22 N -0.524 5.524 23 C 0.226 3.774 24 O -0.193 6.193 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.029 0.971 33 H 0.244 0.756 34 H 0.001 0.999 35 H 0.012 0.988 36 H 0.411 0.589 37 H 0.200 0.800 38 H 0.311 0.689 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.305 16.652 -0.979 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 C -0.182 4.182 4 C 0.012 3.988 5 N -0.346 5.346 6 C -0.363 4.363 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.604 5.604 10 Si 0.805 3.195 11 H -0.185 1.185 12 H -0.222 1.222 13 H -0.224 1.224 14 C 0.065 3.935 15 C 0.029 3.971 16 H 0.106 0.894 17 N -0.336 5.336 18 C 0.389 3.611 19 O -0.436 6.436 20 C -0.179 4.179 21 C -0.091 4.091 22 N -0.252 5.252 23 C 0.002 3.998 24 O -0.079 6.079 25 H 0.095 0.905 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.019 0.981 35 H 0.030 0.970 36 H 0.249 0.751 37 H 0.217 0.783 38 H 0.326 0.674 Dipole moment (debyes) X Y Z Total from point charges 7.243 16.170 -1.939 17.823 hybrid contribution -0.307 -1.533 0.950 1.830 sum 6.935 14.636 -0.989 16.226 Atomic orbital electron populations 1.21588 0.92454 1.01120 1.02880 1.22001 0.96927 0.95729 0.92872 1.21657 1.00680 0.92532 1.03322 1.21908 0.97644 0.83278 0.95948 1.44684 1.86637 1.01596 1.01703 1.19517 1.42065 0.84967 0.89797 0.89436 1.25661 1.02952 1.00341 0.97265 1.70221 1.58598 1.20493 1.11084 0.85029 0.76455 0.79323 0.78661 1.18476 1.22167 1.22439 1.21116 0.97479 0.91130 0.83811 1.22249 0.81596 0.94968 0.98325 0.89368 1.45776 1.14677 1.62406 1.10721 1.16619 0.83378 0.77987 0.83134 1.90870 1.58792 1.46469 1.47518 1.22821 0.92671 1.11020 0.91410 1.23755 0.89364 0.97605 0.98417 1.70489 1.18087 1.17151 1.19463 1.29710 0.89801 0.94471 0.85781 1.84509 1.22046 1.60769 1.40562 0.90456 0.91155 0.95002 0.92294 0.91484 0.90175 0.93075 0.95323 0.94707 0.98129 0.96979 0.75085 0.78343 0.67399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.61 8.61 71.98 0.62 -2.99 16 2 C -0.07 -2.26 0.83 -50.79 -0.04 -2.31 16 3 C -0.12 -2.67 8.35 71.98 0.60 -2.07 16 4 C 0.14 5.12 6.12 86.86 0.53 5.65 16 5 N -0.62 -31.06 3.38 -691.96 -2.34 -33.40 16 6 C -0.23 -12.99 10.28 84.03 0.86 -12.13 16 7 H 0.09 4.58 7.83 -2.91 -0.02 4.55 16 8 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 9 N -0.95 -59.60 10.31 21.65 0.22 -59.37 16 10 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 13 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 14 C 0.19 9.73 4.73 86.73 0.41 10.14 16 15 C 0.13 5.08 2.59 46.18 0.12 5.20 16 16 H 0.09 3.47 7.45 -2.38 -0.02 3.45 16 17 N -0.69 -22.90 4.41 -440.82 -1.94 -24.85 16 18 C 0.60 21.34 7.79 86.46 0.67 22.02 16 19 O -0.56 -23.66 16.54 -4.31 -0.07 -23.73 16 20 C -0.12 -3.56 7.18 24.05 0.17 -3.39 16 21 C 0.05 1.36 11.66 83.97 0.98 2.34 16 22 N -0.52 -12.00 11.26 -315.10 -3.55 -15.55 16 23 C 0.23 3.57 13.21 130.42 1.72 5.29 16 24 O -0.19 -4.27 10.57 -7.03 -0.07 -4.34 16 25 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.03 1.17 7.81 -2.39 -0.02 1.15 16 28 H 0.06 1.19 6.27 -2.39 -0.01 1.17 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.84 8.05 -2.39 -0.02 1.82 16 32 H 0.03 1.02 8.04 -2.39 -0.02 1.00 16 33 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 34 H 0.00 0.03 7.41 -2.39 -0.02 0.01 16 35 H 0.01 0.71 7.38 -2.39 -0.02 0.69 16 36 H 0.41 11.83 6.84 -92.70 -0.63 11.20 16 37 H 0.20 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.31 0.65 8.06 -2.91 -0.02 0.62 16 Total: -1.00 -76.95 318.25 1.83 -75.12 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 0.44 Total: 13.43 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 7.12 Total: 24.20 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -7.61 Total: -133.17 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.15 Total: -28.07 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -76.95 1.83 -75.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974869229.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.126 kcal (2) G-P(sol) polarization free energy of solvation -76.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds